import org.eclipse.swt.events.SelectionEvent;
import org.eclipse.swt.widgets.Menu;
import org.eclipse.swt.widgets.MenuItem;
-import org.eclipse.ui.IWorkbenchPart;
import org.eclipse.ui.IWorkbenchWindow;
import org.eclipse.ui.PlatformUI;
import org.eclipse.ui.actions.CompoundContributionItem;
+import eu.etaxonomy.cdm.api.application.CdmApplicationState;
import eu.etaxonomy.cdm.api.facade.DerivedUnitFacadeCacheStrategy;
+import eu.etaxonomy.cdm.api.service.IOccurrenceService;
import eu.etaxonomy.cdm.model.media.Media;
import eu.etaxonomy.cdm.model.molecular.DnaSample;
import eu.etaxonomy.cdm.model.molecular.Sequence;
import eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase;
import eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationType;
import eu.etaxonomy.taxeditor.editor.EditorUtil;
+import eu.etaxonomy.taxeditor.editor.l10n.Messages;
import eu.etaxonomy.taxeditor.editor.view.derivate.DerivateView;
import eu.etaxonomy.taxeditor.model.AbstractUtility;
+import eu.etaxonomy.taxeditor.model.MessagingUtils;
+import eu.etaxonomy.taxeditor.store.CdmStore;
+import eu.etaxonomy.taxeditor.ui.dialog.selection.MediaSelectionDialog;
/**
* Context menu for the creation of derivates in the derivate hierarchy.
*/
public class CreateDerivateContextMenu extends CompoundContributionItem {
- /* (non-Javadoc)
- * @see org.eclipse.ui.actions.CompoundContributionItem#getContributionItems()
- */
+ private static final String SINGLE_READ = Messages.CreateDerivateContextMenu_SINGLE_READ;
+ private static final String CONSENSUS_SEQUENCE = Messages.CreateDerivateContextMenu_SEQUENCE;
+ private static final String MEDIA_SPECIMEN = Messages.CreateDerivateContextMenu_MEDIA_SPECIMEN;
+ private static final String DNA_SAMPLE = Messages.CreateDerivateContextMenu_DNA_SAMPLE;
+ private static final String TISSUE_SAMPLE = Messages.CreateDerivateContextMenu_TISSUE_SAMPLE;
+ private static final String SPECIMEN = Messages.CreateDerivateContextMenu_SPECIMEN;
+
@Override
protected IContributionItem[] getContributionItems() {
IContributionItem[] contributionItems = new IContributionItem[] {
@Override
public void fill(Menu menu, int index) {
MenuItem addItem = new MenuItem(menu, SWT.CASCADE);
- addItem.setText("Add...");
+ addItem.setText(Messages.CreateDerivateContextMenu_ADD);
Menu addMenu = new Menu(menu);
addItem.setMenu(addMenu);
final IWorkbenchWindow window = PlatformUI.getWorkbench().getActiveWorkbenchWindow();
if(selectedTreeNode!=null){
//context menu for FieldUnit
if(selectedTreeNode.getValue() instanceof FieldUnit){
- createMenuItem(addMenu, "Specimen", selectedTreeNode, DerivedUnit.class, SpecimenOrObservationType.PreservedSpecimen);
+ createMenuItem(addMenu, SPECIMEN, selectedTreeNode, DerivedUnit.class, SpecimenOrObservationType.PreservedSpecimen, DerivationEventType.GATHERING_IN_SITU());
new MenuItem(addMenu, SWT.SEPARATOR);
- createMenuItem(addMenu, "Tissue Sample", selectedTreeNode, DerivedUnit.class, SpecimenOrObservationType.TissueSample);
- createMenuItem(addMenu, "DNA Sample", selectedTreeNode, DnaSample.class, SpecimenOrObservationType.DnaSample);
- createMenuItem(addMenu, "Media Specimen", selectedTreeNode, MediaSpecimen.class, SpecimenOrObservationType.Media);
+ createMenuItem(addMenu, TISSUE_SAMPLE, selectedTreeNode, DnaSample.class, SpecimenOrObservationType.TissueSample, DerivationEventType.PREPARATION());
+ createMenuItem(addMenu, DNA_SAMPLE, selectedTreeNode, DnaSample.class, SpecimenOrObservationType.DnaSample, DerivationEventType.DNA_EXTRACTION());
+ createMenuItem(addMenu, MEDIA_SPECIMEN, selectedTreeNode, MediaSpecimen.class, SpecimenOrObservationType.StillImage, DerivationEventType.ACCESSIONING());
+ return;
}
//context menu for Specimen
else if(selectedTreeNode.getValue() instanceof DerivedUnit && ((DerivedUnit)selectedTreeNode.getValue()).getRecordBasis()==SpecimenOrObservationType.PreservedSpecimen){
- createMenuItem(addMenu, "Tissue Sample", selectedTreeNode, DerivedUnit.class, SpecimenOrObservationType.TissueSample);
- createMenuItem(addMenu, "DNA Sample", selectedTreeNode, DnaSample.class, SpecimenOrObservationType.DnaSample);
- createMenuItem(addMenu, "Media Specimen", selectedTreeNode, MediaSpecimen.class, SpecimenOrObservationType.Media);
+ createMenuItem(addMenu, TISSUE_SAMPLE, selectedTreeNode, DnaSample.class, SpecimenOrObservationType.TissueSample, DerivationEventType.PREPARATION());
+ createMenuItem(addMenu, DNA_SAMPLE, selectedTreeNode, DnaSample.class, SpecimenOrObservationType.DnaSample, DerivationEventType.DNA_EXTRACTION());
+ createMenuItem(addMenu, MEDIA_SPECIMEN, selectedTreeNode, MediaSpecimen.class, SpecimenOrObservationType.StillImage, DerivationEventType.ACCESSIONING());
+ return;
}
//context menu for TissueSample
- else if(selectedTreeNode.getValue() instanceof DerivedUnit && ((DerivedUnit)selectedTreeNode.getValue()).getRecordBasis()==SpecimenOrObservationType.TissueSample){
- createMenuItem(addMenu, "DnaSample", selectedTreeNode, DnaSample.class, null);
- createMenuItem(addMenu, "Media Specimen", selectedTreeNode, MediaSpecimen.class, SpecimenOrObservationType.Media);
+ else if(selectedTreeNode.getValue() instanceof DnaSample && ((DnaSample)selectedTreeNode.getValue()).getRecordBasis()==SpecimenOrObservationType.TissueSample){
+ createMenuItem(addMenu, DNA_SAMPLE, selectedTreeNode, DnaSample.class, SpecimenOrObservationType.DnaSample, DerivationEventType.DNA_EXTRACTION());
+ createMenuItem(addMenu, MEDIA_SPECIMEN, selectedTreeNode, MediaSpecimen.class, SpecimenOrObservationType.StillImage, DerivationEventType.ACCESSIONING());
+ return;
}
//context menu for DnaSample
- else if(selectedTreeNode.getValue() instanceof DnaSample){
- createMenuItem(addMenu, "Consensus Sequence", selectedTreeNode, Sequence.class, null);
- createMenuItem(addMenu, "Media Specimen", selectedTreeNode, MediaSpecimen.class, SpecimenOrObservationType.Media);
+ else if(selectedTreeNode.getValue() instanceof DnaSample && ((DnaSample)selectedTreeNode.getValue()).getRecordBasis()==SpecimenOrObservationType.DnaSample){
+ createMenuItem(addMenu, CONSENSUS_SEQUENCE, selectedTreeNode, Sequence.class, null, null);
+ createMenuItem(addMenu, MEDIA_SPECIMEN, selectedTreeNode, MediaSpecimen.class, SpecimenOrObservationType.StillImage, DerivationEventType.ACCESSIONING());
+ return;
}
//context menu for Sequence
else if(selectedTreeNode.getValue() instanceof Sequence){
- createMenuItem(addMenu, "Single Read", selectedTreeNode, SingleRead.class, null);
- }
- //default
- else{
- MenuItem menuItem = new MenuItem(addMenu, SWT.NONE);
- menuItem.setText("No child derivates");
- menuItem.setEnabled(false);
+ createMenuItem(addMenu, SINGLE_READ, selectedTreeNode, SingleRead.class, null, null);
+ return;
}
}
+ MenuItem menuItem = new MenuItem(addMenu, SWT.NONE);
+ menuItem.setText(Messages.CreateDerivateContextMenu_NO_CHILD_DERIVATE);
+ menuItem.setEnabled(false);
}
return contributionItems;
}
- private void createMenuItem(Menu menu, String menuLabel, TreeNode selectedNode, Class<?> childClass, SpecimenOrObservationType specimenType) {
- MenuItem menuItem = new MenuItem(menu, SWT.NONE);
- menuItem.setText(menuLabel);
- menuItem.addSelectionListener(new WidgetSelectionListener(selectedNode, childClass, specimenType));
+ private void createMenuItem(Menu menu, String menuLabel, final TreeNode selectedNode, Class<?> childClass, final SpecimenOrObservationType specimenType, final DerivationEventType derivationEventType) {
+ if(specimenType!=null && specimenType.equals(SpecimenOrObservationType.StillImage)){
+ //media submenu
+ MenuItem mediaItem = new MenuItem(menu, SWT.CASCADE);
+ mediaItem.setText(Messages.CreateDerivateContextMenu_MEDIA);
+ Menu mediaMenu = new Menu(menu);
+ mediaItem.setMenu(mediaMenu);
+
+ //media specimen menu
+ MenuItem menuItem = new MenuItem(mediaMenu, SWT.NONE);
+ menuItem.setText(menuLabel);
+ menuItem.addSelectionListener(new WidgetSelectionListener(selectedNode, childClass, specimenType, derivationEventType));
+
+ //existing media menu
+ MenuItem existingMediaItem = new MenuItem(mediaMenu, SWT.NONE);
+ existingMediaItem.setText(Messages.CreateDerivateContextMenu_MEDIA_EXISTING);
+ existingMediaItem.addSelectionListener(new SelectionAdapter() {
+ @Override
+ public void widgetSelected(SelectionEvent e) {
+ //select media
+ Media media = MediaSelectionDialog.select(AbstractUtility.getShell(), null, null);
+ if(media!=null){
+ //create MediaSpecimen
+ MediaSpecimen mediaSpecimen = MediaSpecimen.NewInstance(specimenType);
+ mediaSpecimen.setMediaSpecimen(media);
+
+ //attach to parent
+ if(selectedNode.getValue() instanceof SpecimenOrObservationBase){
+ SpecimenOrObservationBase<?> specimenOrObservationBase = (SpecimenOrObservationBase<?>)selectedNode.getValue();
+
+ specimenOrObservationBase.addDerivationEvent(DerivationEvent.NewSimpleInstance(specimenOrObservationBase, mediaSpecimen, derivationEventType));
+ mediaSpecimen.setCacheStrategy(new DerivedUnitFacadeCacheStrategy());
+ mediaSpecimen.getTitleCache(); //update title cache
+ CdmStore.getService(IOccurrenceService.class).merge(specimenOrObservationBase, true);
+
+ }
+
+ //refresh view
+ DerivateView derivateView = null;
+ if(AbstractUtility.getActivePart() instanceof DerivateView){
+ derivateView = (DerivateView) AbstractUtility.getActivePart();
+ }
+ if(derivateView!=null){
+
+ derivateView.getConversationHolder().commit();
+ derivateView.refreshTree(mediaSpecimen);
+ }
+ }
+ }
+ });
+ }
+ else{
+ MenuItem menuItem = new MenuItem(menu, SWT.NONE);
+ menuItem.setText(menuLabel);
+ menuItem.addSelectionListener(new WidgetSelectionListener(selectedNode, childClass, specimenType, derivationEventType));
+ }
}
private class WidgetSelectionListener extends SelectionAdapter{
//TODO: we need a common interface for the generic like e.g. "IDerivateHierarchyNode"
private final Class<?> childClass;
private final SpecimenOrObservationType specimenType;
+ private final DerivationEventType derivationEventType;
/**
* @param selectedNode
* @param specimenType
*/
- public WidgetSelectionListener(TreeNode selectedNode, Class<?> childClass, SpecimenOrObservationType specimenType) {
+ public WidgetSelectionListener(TreeNode selectedNode, Class<?> childClass, SpecimenOrObservationType specimenType, DerivationEventType derivationEventType) {
this.selectedNode = selectedNode;
this.childClass = childClass;
this.specimenType = specimenType;
+ this.derivationEventType = derivationEventType;
}
- /* (non-Javadoc)
- * @see org.eclipse.swt.events.SelectionListener#widgetSelected(org.eclipse.swt.events.SelectionEvent)
- */
@Override
public void widgetSelected(SelectionEvent e) {
+ DerivateView derivateView = null;
+ if(AbstractUtility.getActivePart() instanceof DerivateView){
+ derivateView = (DerivateView) AbstractUtility.getActivePart();
+ }
+ if(derivateView!=null){
+ if(derivateView.isDirty()){
+ e.doit = false;
+ MessagingUtils.warningDialog(DerivateView.VIEW_HAS_UNSAVED_CHANGES, this, DerivateView.YOU_NEED_TO_SAVE_BEFORE_PERFORMING_THIS_ACTION);
+ return;
+ }
+ }
+
Object createdElement = null;
Object selectedDerivate = selectedNode.getValue();
- if(selectedDerivate instanceof DnaSample){
+ if(selectedDerivate instanceof DnaSample && ((DnaSample) selectedDerivate).getRecordBasis()==SpecimenOrObservationType.DnaSample){
DnaSample dnaSample = (DnaSample)selectedDerivate;
if(childClass.equals(Sequence.class)){
- Sequence newInstance = Sequence.NewInstance("");
- dnaSample.addSequence(newInstance);//why does this not have DnaSample as constructor parameter?
+ Sequence newInstance = Sequence.NewInstance(dnaSample, "", 0); //$NON-NLS-1$
createdElement = newInstance;
}
- }
- else if(selectedDerivate instanceof Sequence){
+ CdmStore.getService(IOccurrenceService.class).merge((SpecimenOrObservationBase) selectedDerivate, true);
+ } else if(selectedDerivate instanceof Sequence){
SingleRead newInstance = SingleRead.NewInstance();
((Sequence) selectedDerivate).addSingleRead(newInstance);
createdElement = newInstance;
+ CdmApplicationState.getCurrentAppConfig().getSequenceService().merge((Sequence)selectedDerivate, true);
+
}
- else if(selectedDerivate instanceof SpecimenOrObservationBase && DerivedUnit.class.isAssignableFrom(childClass)){
+ if(selectedDerivate instanceof SpecimenOrObservationBase && DerivedUnit.class.isAssignableFrom(childClass)){
SpecimenOrObservationBase<?> specimenOrObservationBase = (SpecimenOrObservationBase<?>)selectedDerivate;
DerivedUnit derivedUnit;
if(childClass.equals(DnaSample.class)){
derivedUnit = DnaSample.NewInstance();
+ if(specimenType==SpecimenOrObservationType.DnaSample){
+ derivedUnit.setRecordBasis(SpecimenOrObservationType.DnaSample);
+ }
+ else if(specimenType==SpecimenOrObservationType.TissueSample){
+ derivedUnit.setRecordBasis(SpecimenOrObservationType.TissueSample);
+ }
}
else if(childClass.equals(MediaSpecimen.class)){
derivedUnit = MediaSpecimen.NewInstance(specimenType);
else{
derivedUnit = DerivedUnit.NewInstance(specimenType);
}
- specimenOrObservationBase.addDerivationEvent(DerivationEvent.NewSimpleInstance(specimenOrObservationBase, derivedUnit, DerivationEventType.GATHERING_IN_SITU()));
+ specimenOrObservationBase.addDerivationEvent(DerivationEvent.NewSimpleInstance(specimenOrObservationBase, derivedUnit, derivationEventType));
derivedUnit.setCacheStrategy(new DerivedUnitFacadeCacheStrategy());
derivedUnit.getTitleCache(); //update title cache
createdElement = derivedUnit;
+ CdmStore.getService(IOccurrenceService.class).merge((SpecimenOrObservationBase) selectedDerivate, true);
+
}
//refresh view
- IWorkbenchPart activePart = AbstractUtility.getActivePart();
- if(activePart instanceof DerivateView){
- DerivateView derivateView = (DerivateView)activePart;
- derivateView.changed(null);
+ if(derivateView!=null){
+ derivateView.getConversationHolder().commit();
derivateView.refreshTree(createdElement);
}
}
BGBM BDI Projects / taxeditor.git / blobdiff