add commons-codev again
[taxeditor.git] / .gitattributes
index 57f386b6be8551d97ab93474232bf821538ccced..c3ebb972bbef4d6f17e5a8c0070f9390d84c486e 100644 (file)
@@ -141,60 +141,30 @@ eu.etaxonomy.taxeditor.cdmlib/README.txt -text
 eu.etaxonomy.taxeditor.cdmlib/build.properties -text
 eu.etaxonomy.taxeditor.cdmlib/lib/activation-1.1.1.jar -text
 eu.etaxonomy.taxeditor.cdmlib/lib/aopalliance-1.0.jar -text
-eu.etaxonomy.taxeditor.cdmlib/lib/avro-1.6.3.jar -text
 eu.etaxonomy.taxeditor.cdmlib/lib/c3p0-0.9.2.jar -text
-eu.etaxonomy.taxeditor.cdmlib/lib/cglib-nodep-2.2.2.jar -text
-eu.etaxonomy.taxeditor.cdmlib/lib/com.springsource.org.aopalliance-1.0.0.jar -text
-eu.etaxonomy.taxeditor.cdmlib/lib/com.springsource.org.apache.commons.logging-1.1.1.jar -text
 eu.etaxonomy.taxeditor.cdmlib/lib/commons-codec-20041127.091804.jar -text
 eu.etaxonomy.taxeditor.cdmlib/lib/commons-collections-3.2.1.jar -text
-eu.etaxonomy.taxeditor.cdmlib/lib/commons-dbcp-1.4.jar -text
 eu.etaxonomy.taxeditor.cdmlib/lib/commons-io-2.4.jar -text
-eu.etaxonomy.taxeditor.cdmlib/lib/commons-logging-1.1.2.jar -text
-eu.etaxonomy.taxeditor.cdmlib/lib/commons-pool-1.5.4.jar -text
 eu.etaxonomy.taxeditor.cdmlib/lib/concurrent-1.3.4.jar -text
 eu.etaxonomy.taxeditor.cdmlib/lib/dom4j-1.6.1.jar -text
-eu.etaxonomy.taxeditor.cdmlib/lib/dozer-5.3.0.jar -text
 eu.etaxonomy.taxeditor.cdmlib/lib/easymock-3.1.jar -text
 eu.etaxonomy.taxeditor.cdmlib/lib/easymockclassextension-2.3.jar -text
-eu.etaxonomy.taxeditor.cdmlib/lib/ehcache-core-2.6.9.jar -text
 eu.etaxonomy.taxeditor.cdmlib/lib/ezmorph-1.0.6.jar -text
 eu.etaxonomy.taxeditor.cdmlib/lib/fop-1.1.jar -text
 eu.etaxonomy.taxeditor.cdmlib/lib/google-api-translate-java-0.92.jar -text
 eu.etaxonomy.taxeditor.cdmlib/lib/h2mig_pagestore_addon.jar -text
-eu.etaxonomy.taxeditor.cdmlib/lib/hamcrest-core-1.3.jar -text
 eu.etaxonomy.taxeditor.cdmlib/lib/hibernate-c3p0-4.1.10.Final.jar -text
-eu.etaxonomy.taxeditor.cdmlib/lib/hibernate-cglib-repack-2.1_3.jar -text
-eu.etaxonomy.taxeditor.cdmlib/lib/hibernate-core-4.1.10.Final.jar -text
-eu.etaxonomy.taxeditor.cdmlib/lib/hibernate-ehcache-4.1.10.Final.jar -text
-eu.etaxonomy.taxeditor.cdmlib/lib/hibernate-entitymanager-4.1.10.Final.jar -text
-eu.etaxonomy.taxeditor.cdmlib/lib/hibernate-envers-4.1.10.Final.jar -text
 eu.etaxonomy.taxeditor.cdmlib/lib/hibernate-jpa-2.0-api-1.0.1.Final.jar -text
-eu.etaxonomy.taxeditor.cdmlib/lib/hibernate-search-4.2.0.Final.jar -text
-eu.etaxonomy.taxeditor.cdmlib/lib/hibernate-search-analyzers-4.2.0.Final.jar -text
-eu.etaxonomy.taxeditor.cdmlib/lib/hibernate-search-engine-4.2.0.Final.jar -text
-eu.etaxonomy.taxeditor.cdmlib/lib/hibernate-search-orm-4.2.0.Final.jar -text
 eu.etaxonomy.taxeditor.cdmlib/lib/icu4j-2.6.1.jar -text
-eu.etaxonomy.taxeditor.cdmlib/lib/identificationKeyAPI-1.0-SNAPSHOT-sources.jar -text
-eu.etaxonomy.taxeditor.cdmlib/lib/identificationKeyAPI-1.0-SNAPSHOT.jar -text
-eu.etaxonomy.taxeditor.cdmlib/lib/itextpdf-5.4.0.jar -text
 eu.etaxonomy.taxeditor.cdmlib/lib/jakarta-regexp-1.4.jar -text
 eu.etaxonomy.taxeditor.cdmlib/lib/jaxb-api-2.2.7.jar -text
-eu.etaxonomy.taxeditor.cdmlib/lib/jaxb-impl-2.2-EA.jar -text
 eu.etaxonomy.taxeditor.cdmlib/lib/jaxb-xjc-2.2-EA.jar -text
-eu.etaxonomy.taxeditor.cdmlib/lib/jaxb1-impl-2.2-EA.jar -text
 eu.etaxonomy.taxeditor.cdmlib/lib/jboss-transaction-api_1.1_spec-1.0.0.Final.jar -text
 eu.etaxonomy.taxeditor.cdmlib/lib/jdbc4-2.0.jar -text
 eu.etaxonomy.taxeditor.cdmlib/lib/jdom-1.1.3.jar -text
-eu.etaxonomy.taxeditor.cdmlib/lib/jena-core-2.11.2.jar -text
-eu.etaxonomy.taxeditor.cdmlib/lib/jena-iri-1.0.2.jar -text
-eu.etaxonomy.taxeditor.cdmlib/lib/json-lib-2.4-jdk15.jar -text
 eu.etaxonomy.taxeditor.cdmlib/lib/jsr250-api-1.0.jar -text
 eu.etaxonomy.taxeditor.cdmlib/lib/jtds-1.3.0.jar -text
-eu.etaxonomy.taxeditor.cdmlib/lib/junit-4.11.jar -text
-eu.etaxonomy.taxeditor.cdmlib/lib/log4j-1.2.17.jar -text
 eu.etaxonomy.taxeditor.cdmlib/lib/mchange-commons-java-0.2.3.3.jar -text
-eu.etaxonomy.taxeditor.cdmlib/lib/objenesis-1.2.jar -text
 eu.etaxonomy.taxeditor.cdmlib/lib/odfdom-0.8.jar -text
 eu.etaxonomy.taxeditor.cdmlib/lib/odfdom-java-0.8.7.jar -text
 eu.etaxonomy.taxeditor.cdmlib/lib/opencsv-2.3.jar -text
@@ -214,18 +184,12 @@ eu.etaxonomy.taxeditor.cdmlib/lib/solr-solrj-3.6.2.jar -text
 eu.etaxonomy.taxeditor.cdmlib/lib/stax-1.2.0.jar -text
 eu.etaxonomy.taxeditor.cdmlib/lib/stax-api-1.0.1.jar -text
 eu.etaxonomy.taxeditor.cdmlib/lib/swagger-annotations-1.3.5.jar -text
-eu.etaxonomy.taxeditor.cdmlib/lib/usertype.jodatime-2.0.1.jar -text
-eu.etaxonomy.taxeditor.cdmlib/lib/usertype.spi-2.0.1.jar -text
 eu.etaxonomy.taxeditor.cdmlib/lib/wsdl4j-1.6.2.jar -text
 eu.etaxonomy.taxeditor.cdmlib/lib/xalan-2.6.0.jar -text
 eu.etaxonomy.taxeditor.cdmlib/lib/xml-resolver-1.2.jar -text
 eu.etaxonomy.taxeditor.cdmlib/lib/xmlParserAPIs-2.6.2.jar -text
-eu.etaxonomy.taxeditor.cdmlib/lib/xmlgraphics-commons-1.5.jar -text
-eu.etaxonomy.taxeditor.cdmlib/lib/xmlpull-1.1.3.1.jar -text
-eu.etaxonomy.taxeditor.cdmlib/lib/xom-1.0.jar -text
 eu.etaxonomy.taxeditor.cdmlib/lib/xpp3-1.1.4c.jar -text
 eu.etaxonomy.taxeditor.cdmlib/lib/xpp3_min-1.1.4c.jar -text
-eu.etaxonomy.taxeditor.cdmlib/lib/xstream-1.4.4.jar -text
 eu.etaxonomy.taxeditor.cdmlib/lib/yjp-controller-api-redist-9.0.8.jar -text
 eu.etaxonomy.taxeditor.cdmlib/pom.xml -text
 eu.etaxonomy.taxeditor.cdmlib/src/main/java/eu/etaxonomy/cdm/api/application/CdmApplicationRemoteConfiguration.java -text
@@ -358,7 +322,6 @@ eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/key/po
 eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/key/polytomous/operation/CreateNodeOperation.java -text
 eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/key/polytomous/operation/DeleteNodeOperation.java -text
 eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/key/polytomous/operation/RefreshNodeNumberingOperation.java -text
-eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/name/TaxonNameEditor.java -text
 eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/name/container/AbstractGroup.java -text
 eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/name/container/AbstractGroupedContainer.java -text
 eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/name/container/AbstractHomotypicalGroupContainer.java -text
@@ -1217,7 +1180,6 @@ eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/io/wizard/CsvE
 eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/io/wizard/CsvNameExportWizard.java -text
 eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/io/wizard/CsvPrintExportWizard.java -text
 eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/io/wizard/DarwinCoreArchiveExportWizard.java -text
-eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/io/wizard/EndnoteImportWizard.java -text
 eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/io/wizard/ExcelNormalExplicitTaxaImportWizard.java -text
 eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/io/wizard/ExportToFileDestinationWizardPage.java -text
 eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/io/wizard/GenericConfiguratorWizardPage.java -text
@@ -1802,7 +1764,6 @@ eu.etaxonomy.taxeditor.test/src/main/resources/datasources.xml -text
 eu.etaxonomy.taxeditor.test/src/main/resources/eu/etaxonomy/cdm/api/cache/CdmClientCachingTest.xml -text
 eu.etaxonomy.taxeditor.test/src/main/resources/eu/etaxonomy/cdm/cdm.datasources.xml -text
 eu.etaxonomy.taxeditor.test/src/main/resources/eu/etaxonomy/cdm/model/PolytomousKeyTest.xml -text
-eu.etaxonomy.taxeditor.test/src/main/resources/eu/etaxonomy/cdm/model/TaxonNameEditorTest.xml -text
 eu.etaxonomy.taxeditor.test/src/main/resources/eu/etaxonomy/cdm/model/TaxonNavigatorTest.xml -text
 eu.etaxonomy.taxeditor.test/src/main/resources/eu/etaxonomy/cdm/testRemotingApplicationContext.xml -text
 eu.etaxonomy.taxeditor.test/src/main/resources/eu/etaxonomy/taxeditor/lazyloading/AbstractLazyInitializerTest.xml -text
@@ -1816,7 +1777,6 @@ eu.etaxonomy.taxeditor.test/src/main/resources/unitils.properties -text
 eu.etaxonomy.taxeditor.test/src/test/java/eu/etaxonomy/cdm/api/cache/CdmClientCachingTest.java -text
 eu.etaxonomy.taxeditor.test/src/test/java/eu/etaxonomy/cdm/api/cache/CdmModelGetMethodCacherTest.java -text
 eu.etaxonomy.taxeditor.test/src/test/java/eu/etaxonomy/cdm/model/PolytomousKeyTest.java -text
-eu.etaxonomy.taxeditor.test/src/test/java/eu/etaxonomy/cdm/model/TaxonNameEditorTest.java -text
 eu.etaxonomy.taxeditor.test/src/test/java/eu/etaxonomy/cdm/model/TaxonNavigatorTest.java -text
 eu.etaxonomy.taxeditor.test/src/test/java/eu/etaxonomy/taxeditor/application/menu/general/NewMenuTest.java -text
 eu.etaxonomy.taxeditor.test/src/test/java/eu/etaxonomy/taxeditor/httpinvoker/BaseRemotingTest.java -text
@@ -1872,6 +1832,12 @@ src/site/fml/troubleshooting.fml -text
 src/site/resources/css/site.css -text
 src/site/resources/images/taxeditor_transformed.png -text
 src/site/site.xml -text
+eu.etaxonomy.taxeditor.molecular/src/main/java/eu/etaxonomy/taxeditor/molecular/handler/ExportSequenceToFileHandler.java -text
+eu.etaxonomy.taxeditor.molecular/src/main/java/eu/etaxonomy/taxeditor/molecular/io/CDMSequenceMatrixAdapter.java -text
+eu.etaxonomy.taxeditor.molecular/src/main/java/eu/etaxonomy/taxeditor/molecular/io/SequenceIDIterator.java -text
+eu.etaxonomy.taxeditor.molecular/src/main/java/eu/etaxonomy/taxeditor/molecular/io/wizard/ExportSingleReadAlignmentWizard.java -text
+eu.etaxonomy.taxeditor.molecular/src/main/java/eu/etaxonomy/taxeditor/molecular/io/wizard/ExportSingleReadAlignmentWizardPage.java -text
+eu.etaxonomy.taxeditor.molecular/src/test/java/eu/etaxonomy/taxeditor/molecular/io/SequenceIDIteratorTest.java -text
 
 # The following files will be ignored when merging another
 # branch into this branch in case of merge conflict and
@@ -1884,13 +1850,9 @@ src/site/site.xml -text
 **/pom.xml merge=ours
 **/MANIFEST.MF merge=ours
 **/feature.xml merge=ours
-eu.etaxonomy.taxeditor.cdmlib/.classpath merge=ours
 eu.etaxonomy.taxeditor.cdmlib/build.properties merge=ours
-eu.etaxonomy.taxeditor.molecular/src/main/java/eu/etaxonomy/taxeditor/molecular/handler/ExportSequenceToFileHandler.java -text
-eu.etaxonomy.taxeditor.molecular/src/main/java/eu/etaxonomy/taxeditor/molecular/io/CDMSequenceMatrixAdapter.java -text
-eu.etaxonomy.taxeditor.molecular/src/main/java/eu/etaxonomy/taxeditor/molecular/io/SequenceIDIterator.java -text
-eu.etaxonomy.taxeditor.molecular/src/main/java/eu/etaxonomy/taxeditor/molecular/io/wizard/ExportSingleReadAlignmentWizard.java -text
-eu.etaxonomy.taxeditor.molecular/src/main/java/eu/etaxonomy/taxeditor/molecular/io/wizard/ExportSingleReadAlignmentWizardPage.java -text
-eu.etaxonomy.taxeditor.molecular/src/test/java/eu/etaxonomy/taxeditor/molecular/io/SequenceIDIteratorTest.java -text
-eu.etaxonomy.taxeditor/eu.etaxonomy.taxeditor.product merge=ours
+eu.etaxonomy.taxeditor.printpublisher/build.properties merge=ours
 eu.etaxonomy.taxeditor/eu.etaxonomy.taxeditor.product.with.jre merge=ours
+eu.etaxonomy.taxeditor/eu.etaxonomy.taxeditor.product merge=ours
+
+