import org.eclipse.jface.viewers.ISelection;
import org.eclipse.jface.viewers.SelectionChangedEvent;
+import org.eclipse.jface.viewers.TreeNode;
import org.eclipse.swt.SWT;
import org.eclipse.swt.widgets.Composite;
import org.eclipse.ui.forms.widgets.ExpandableComposite;
import eu.etaxonomy.cdm.api.facade.DerivedUnitFacade;
import eu.etaxonomy.cdm.api.facade.DerivedUnitFacadeNotSupportedException;
-import eu.etaxonomy.cdm.api.service.ITermService;
+import eu.etaxonomy.cdm.ext.occurrence.gbif.GbifResponse;
import eu.etaxonomy.cdm.model.agent.Person;
import eu.etaxonomy.cdm.model.agent.Team;
import eu.etaxonomy.cdm.model.agent.TeamOrPersonBase;
import eu.etaxonomy.cdm.model.common.DefinedTermBase;
import eu.etaxonomy.cdm.model.common.Group;
import eu.etaxonomy.cdm.model.common.Marker;
-import eu.etaxonomy.cdm.model.common.MarkerType;
import eu.etaxonomy.cdm.model.common.TermVocabulary;
import eu.etaxonomy.cdm.model.common.User;
import eu.etaxonomy.cdm.model.description.CategoricalData;
import eu.etaxonomy.cdm.model.description.DescriptionBase;
import eu.etaxonomy.cdm.model.description.DescriptionElementBase;
-import eu.etaxonomy.cdm.model.description.PolytomousKey;
import eu.etaxonomy.cdm.model.description.PolytomousKeyNode;
import eu.etaxonomy.cdm.model.description.SpecimenDescription;
import eu.etaxonomy.cdm.model.media.Media;
-import eu.etaxonomy.cdm.model.molecular.Amplification;
import eu.etaxonomy.cdm.model.molecular.DnaSample;
import eu.etaxonomy.cdm.model.molecular.Sequence;
import eu.etaxonomy.cdm.model.molecular.SingleRead;
import eu.etaxonomy.cdm.model.reference.Reference;
import eu.etaxonomy.cdm.model.taxon.TaxonBase;
import eu.etaxonomy.cdm.model.taxon.TaxonRelationship;
-import eu.etaxonomy.taxeditor.editor.UsageTermCollection;
import eu.etaxonomy.taxeditor.model.AbstractUtility;
import eu.etaxonomy.taxeditor.model.FeatureNodeContainer;
+import eu.etaxonomy.taxeditor.model.IDerivedUnitFacadePart;
+import eu.etaxonomy.taxeditor.model.MessagingUtils;
import eu.etaxonomy.taxeditor.model.PolytomousKeyRelationship;
import eu.etaxonomy.taxeditor.preference.IPreferenceKeys;
import eu.etaxonomy.taxeditor.preference.PreferencesUtil;
-import eu.etaxonomy.taxeditor.store.CdmStore;
+import eu.etaxonomy.taxeditor.store.UsageTermCollection;
import eu.etaxonomy.taxeditor.ui.element.AbstractFormSection;
import eu.etaxonomy.taxeditor.ui.element.RootElement;
import eu.etaxonomy.taxeditor.ui.section.agent.PersonDetailSection;
import eu.etaxonomy.taxeditor.ui.section.grantedAuthority.GrantedAuthorityDetailSection;
import eu.etaxonomy.taxeditor.ui.section.group.GroupDetailSection;
import eu.etaxonomy.taxeditor.ui.section.group.MemberDetailSection;
+import eu.etaxonomy.taxeditor.ui.section.identifier.IdentifierDetailSection;
import eu.etaxonomy.taxeditor.ui.section.key.PolytomousKeyDetailSection;
import eu.etaxonomy.taxeditor.ui.section.key.PolytomousKeyNodeDetailSection;
-import eu.etaxonomy.taxeditor.ui.section.key.TaxonomicScopeSection;
import eu.etaxonomy.taxeditor.ui.section.name.NameRelationshipDetailSection;
import eu.etaxonomy.taxeditor.ui.section.name.NomenclaturalStatusSection;
import eu.etaxonomy.taxeditor.ui.section.name.NonViralNameDetailSection;
import eu.etaxonomy.taxeditor.ui.section.occurrence.FieldUnitDetailSection;
import eu.etaxonomy.taxeditor.ui.section.occurrence.FieldUnitGeneralDetailSection;
import eu.etaxonomy.taxeditor.ui.section.occurrence.GatheringEventDetailSection;
-import eu.etaxonomy.taxeditor.ui.section.occurrence.derivedUnit.PreservedSpecimenDetailSection;
-import eu.etaxonomy.taxeditor.ui.section.occurrence.derivedUnit.PreservedSpecimenDeterminationDetailSection;
-import eu.etaxonomy.taxeditor.ui.section.occurrence.derivedUnit.PreservedSpecimenGeneralDetailSection;
-import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.AmplificationCloningDetailSection;
-import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.AmplificationGeneralDetailSection;
-import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.AmplificationPrimerDetailSection;
+import eu.etaxonomy.taxeditor.ui.section.occurrence.association.DerivedUnitTypeDesignationSection;
+import eu.etaxonomy.taxeditor.ui.section.occurrence.association.TaxonAssociationDetailSection;
+import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.DnaQualityDetailSection;
import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.DnaSampleGeneralDetailSection;
+import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.DnaSamplePreparationPreservationSection;
+import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.SampleDesignationDetailSection;
+import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.SequenceContigFileCollectionDetailSection;
import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.SequenceGeneralDetailSection;
+import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.SequenceReferenceCollectionDetailSection;
import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.SingleReadGeneralDetailSection;
+import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.SingleReadPherogramCollectionDetailSection;
import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.TissueSampleGeneralDetailSection;
-import eu.etaxonomy.taxeditor.ui.section.occurrence.media.LivingPlantPhotoGeneralDetailSection;
import eu.etaxonomy.taxeditor.ui.section.occurrence.media.MediaSpecimenGeneralDetailSection;
-import eu.etaxonomy.taxeditor.ui.section.occurrence.media.SpecimenScanGeneralDetailSection;
import eu.etaxonomy.taxeditor.ui.section.reference.NomenclaturalReferenceDetailSection;
import eu.etaxonomy.taxeditor.ui.section.reference.ReferenceDetailSection;
+import eu.etaxonomy.taxeditor.ui.section.supplemental.RightsSection;
import eu.etaxonomy.taxeditor.ui.section.taxon.ParsingMessagesSection;
import eu.etaxonomy.taxeditor.ui.section.taxon.TaxonBaseDetailSection;
import eu.etaxonomy.taxeditor.ui.section.taxon.TaxonRelationshipDetailSection;
private ISelection selection;
- /**
- * <p>
- * Constructor for DetailsViewer.
- * </p>
- *
- * @param parent
- * a {@link org.eclipse.swt.widgets.Composite} object.
- * @param viewPart
- * a {@link eu.etaxonomy.taxeditor.view.AbstractCdmViewPart}
- * object.
- */
public DetailsViewer(Composite parent, AbstractCdmViewPart viewPart) {
super(parent, viewPart);
}
// editor
// and not derived unit facade objects,
- /*
- * (non-Javadoc)
- *
- * @see
- * eu.etaxonomy.taxeditor.editor.view.AbstractCdmDataViewer#setInput(java
- * .lang.Object)
- */
@Override
public void setInput(Object input) {
- if (input instanceof DerivedUnit) {
+ if(input instanceof TreeNode){
+ input = ((TreeNode) input).getValue();
+ }
+ if(input instanceof GbifResponse){
+ input = ((GbifResponse) input).getDerivedUnitFacade();
+ }
+ if (input.getClass().equals(DerivedUnit.class)) {
DerivedUnit derivedUnit = (DerivedUnit)input;
- if(!PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.BULK_EDITOR_AVOID_FACADE)){
- try {
- input = DerivedUnitFacade.NewInstance(derivedUnit,
- PreferencesUtil.getDerivedUnitConfigurator());
- } catch (DerivedUnitFacadeNotSupportedException e) {
- AbstractUtility.error(getClass(), e);
- }
+ try {
+ input = DerivedUnitFacade.NewInstance(derivedUnit,
+ PreferencesUtil.getDerivedUnitConfigurator());
+ } catch (DerivedUnitFacadeNotSupportedException e) {
+// MessagingUtils.error(getClass(), e); //nothing should happen, later on the Details View will show an according information that it is not possible to open this data
}
}
else if(input instanceof FieldUnit){
// END HACK TO MAKE THE DERIVED UNIT FACADE WORK
- /*
- * (non-Javadoc)
- *
- * @see org.eclipse.jface.viewers.Viewer#refresh()
- */
+
/** {@inheritDoc} */
@Override
protected void showParts() {
destroySections();
if (input instanceof TaxonBase) {
- createTaxonSections(rootElement, (TaxonBase) input);
+ if(((TaxonBase) input).getName()==null){
+ createEmptySection(rootElement);
+ }
+ else{
+ createTaxonSections(rootElement);
+ }
} else if (input instanceof NonViralName) {
createNameSections(rootElement);
createSpecimenDescriptionSection(rootElement);
}
else{
- Set<Marker> descriptionMarkers = ((DescriptionBase) input).getMarkers();
- MarkerType useMarkertype = (MarkerType) CdmStore.getService(ITermService.class).find(
- UsageTermCollection.uuidUseMarkerType);
+ Set<Marker> descriptionMarkers = ((DescriptionBase<?>) input).getMarkers();
+
Boolean isUseDescription = false;
for (Marker marker : descriptionMarkers) {
- if (marker.getMarkerType().equals(useMarkertype)) {
+ if (marker.getMarkerType()!= null && marker.getMarkerType().getUuid().equals(UsageTermCollection.uuidUseMarkerType)) {
isUseDescription = true;
}
}
- if (((DescriptionBase) input).isImageGallery()) {
+ if (((DescriptionBase<?>) input).isImageGallery()) {
createImageGallerySection(rootElement);
} else if (isUseDescription) {
}
} else if (input instanceof DescriptionElementBase) {
Set<Marker> descriptionMarkers = ((DescriptionElementBase) input).getInDescription().getMarkers();
- MarkerType useMarkertype = (MarkerType) CdmStore.getService(ITermService.class).find(
- UsageTermCollection.uuidUseMarkerType);
+
Boolean isUseDescription = false;
for (Marker marker : descriptionMarkers) {
- if (marker.getMarkerType().equals(useMarkertype)) {
+ if (marker.getMarkerType()!= null && marker.getMarkerType().getUuid().equals(UsageTermCollection.uuidUseMarkerType)) {
isUseDescription = true;
}
}
} else if (input instanceof DerivedUnitFacade) {
if(((DerivedUnitFacade) input).getType()==SpecimenOrObservationType.FieldUnit){
- createFieldUnitSection(rootElement);
+ if(((DerivedUnitFacade) input).innerFieldUnit()==null){
+ MessagingUtils.error(DetailsViewer.class, "FieldUnit of facade is null", null);
+ }
+ else{
+ createFieldUnitSection(rootElement);
+ }
}
else if(((DerivedUnitFacade) input).getType()==SpecimenOrObservationType.PreservedSpecimen){
- createDerivedUnitBaseElementSection(rootElement);
+ if(((DerivedUnitFacade) input).innerDerivedUnit()==null){
+ MessagingUtils.error(DetailsViewer.class, "DerivedUnit of facade is null", null);
+ }
+ else{
+ createDerivedUnitBaseElementSection(rootElement);
+ }
}
else if(((DerivedUnitFacade) input).getType()==SpecimenOrObservationType.TissueSample){
- createTissueSampleSection(rootElement);
- }
- // else if(((DerivedUnitFacade) input).getType()==SpecimenOrObservationType.DnaSample){
- // createDnaSampleSection(rootElement);
- // }
- //FIXME: change to specific SpecimenOrObservationType
- else if(((DerivedUnitFacade) input).getType()==SpecimenOrObservationType.StillImage){
- createSpecimenScanSection(rootElement);
- }
- else if(((DerivedUnitFacade) input).getType()==SpecimenOrObservationType.StillImage){
- createLivingPlantPhotoSection(rootElement);
- }
- else if(((DerivedUnitFacade) input).getType()==SpecimenOrObservationType.StillImage){
- createMediaSpecimenSection(rootElement);
+ //TissueSample should only be created by using it's own class
+ //in future using only one class with different SpecimenOrObservationTypes is desired
+// createTissueSampleSection(rootElement);
}
else{
createDerivedUnitBaseElementSection(rootElement);
}
} else if (input instanceof DnaSample){
- createDnaSampleSection(rootElement);
+ DnaSample dnaSample = (DnaSample)input;
+ if(dnaSample.getRecordBasis()==SpecimenOrObservationType.TissueSample){
+ createTissueSampleSection(rootElement);
+ }
+ else if(dnaSample.getRecordBasis()==SpecimenOrObservationType.DnaSample){
+ createDnaSampleSection(rootElement);
+ }
} else if (input instanceof MediaSpecimen){
createMediaSpecimenSection(rootElement);
}
-// else if (input instanceof SpecimenOrObservationBase){
-// SpecimenOrObservationType recordBasis = ((SpecimenOrObservationBase<?>) input).getRecordBasis();
-// if(recordBasis==SpecimenOrObservationType.PreservedSpecimen){
-// createPreservedSpecimenSpecimenSection(rootElement);
-// }
-// else if(recordBasis==SpecimenOrObservationType.FieldUnit){
-// createFieldUnitSection(rootElement);
-// }
-// else if(recordBasis==SpecimenOrObservationType.DnaSample){
-// createDnaSampleSection(rootElement);
-// }
-// else if(recordBasis.isKindOf(SpecimenOrObservationType.Media)){
-// createMediaSpecimenSection(rootElement);
-// }
-// }
- else if(input instanceof Amplification){
- createAmplificationSection(rootElement);
- }
else if(input instanceof Sequence){
createSequenceSection(rootElement);
}
else if (input instanceof FeatureNodeContainer) {
createFeatureDistributionSection(rootElement);
- } else if (input instanceof PolytomousKey) {
- //createPolytomousKeySection(rootElement);
-
- } else if ((input instanceof PolytomousKeyNode) || (input instanceof PolytomousKeyRelationship)) {
+ }else if ((input instanceof PolytomousKeyNode) || (input instanceof PolytomousKeyRelationship)) {
createPolytomousKeyNodeSection(rootElement);
} else if (input instanceof User) {
createUserSection(rootElement);
} else if (input instanceof DefinedTermBase) {
createDefinedTermSection(rootElement);
}
- if(managedForm.getParts().length==0) {
+ else {
createEmptySection(rootElement);
}
layout();
}
- /**
- * @param rootElement
- */
private void createEmptySection(RootElement parent) {
destroySections();
addPart(emptySection);
}
- /**
- * @param rootElement
- */
private void createGroupSection(RootElement parent) {
destroySections();
addPart(grantedAuthorityDetailSection);
}
- /*
- * (non-Javadoc)
- *
- * @see org.eclipse.jface.viewers.Viewer#getSelection()
- */
/** {@inheritDoc} */
@Override
public ISelection getSelection() {
return selection;
}
- /*
- * (non-Javadoc)
- *
- * @see
- * org.eclipse.jface.viewers.Viewer#setSelection(org.eclipse.jface.viewers
- * .ISelection, boolean)
- */
/** {@inheritDoc} */
@Override
public void setSelection(ISelection selection, boolean reveal) {
this.selection = selection;
- SelectionChangedEvent selectionChangedEvent = new SelectionChangedEvent(this, selection);
- fireSelectionChanged(selectionChangedEvent);
+ if(this.selection!=null){
+ SelectionChangedEvent selectionChangedEvent = new SelectionChangedEvent(this, selection);
+ fireSelectionChanged(selectionChangedEvent);
+ }
}
- /**
- * createTaxonSections(RootElement parent)
- *
- * @param parent
- */
- private void createTaxonSections(RootElement parent, TaxonBase taxonBase) {
+ private void createTaxonSections(RootElement parent) {
destroySections();
- TaxonBaseDetailSection taxonBaseDetailSection = formFactory.createTaxonBaseDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
+ ParsingMessagesSection parsingMessagesSection = formFactory.createParsingMessagesSection(getConversationHolder(), parent, this,
+ ExpandableComposite.EXPANDED | ExpandableComposite.EXPANDED);
+ TaxonBaseDetailSection taxonBaseDetailSection = formFactory.createTaxonBaseDetailSection(getConversationHolder(), parent, this,
+ ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
- NonViralNameDetailSection nonViralNameSection = formFactory.createNonViralNameDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE
- | ExpandableComposite.EXPANDED);
-
+ NonViralNameDetailSection nonViralNameSection = formFactory.createNonViralNameDetailSection(getConversationHolder(), parent, this,
+ ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
- NomenclaturalReferenceDetailSection referenceDetailSection = formFactory.createNomenclaturalReferenceDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
-
+ NomenclaturalReferenceDetailSection referenceDetailSection = formFactory.createNomenclaturalReferenceDetailSection(getConversationHolder(), parent, this,
+ ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
- NomenclaturalStatusSection nomenclaturalStatusSection = formFactory.createNomenclaturalStatusSection(getConversationHolder(), parent,ExpandableComposite.TWISTIE);
-
+ NomenclaturalStatusSection nomenclaturalStatusSection = formFactory.createNomenclaturalStatusSection(getConversationHolder(), parent,
+ ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
- ProtologueSection protologSection = formFactory.createProtologueSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
+ //TODO RL
+ if(!PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.IS_RL)){
+ ProtologueSection protologSection = formFactory.createProtologueSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
+ formFactory.createHorizontalSeparator(parent, SWT.BORDER);
- formFactory.createHorizontalSeparator(parent, SWT.BORDER);
-
- TypeDesignationSection typeDesignationSection = formFactory.createTypeDesignationSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
-
- formFactory.createHorizontalSeparator(parent, SWT.BORDER);
+ TypeDesignationSection typeDesignationSection = formFactory.createTypeDesignationSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
+ formFactory.createHorizontalSeparator(parent, SWT.BORDER);
- NameRelationshipDetailSection nameRelationshipSection = formFactory.createNameRelationshipDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
+ NameRelationshipDetailSection nameRelationshipSection = formFactory.createNameRelationshipDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
+ formFactory.createHorizontalSeparator(parent, SWT.BORDER);
- formFactory.createHorizontalSeparator(parent, SWT.BORDER);
-
-// SynonymRelationshipDetailSection synonymRelationshipSection = null;
-// if(taxonBase instanceof Synonym){
-// synonymRelationshipSection = formFactory.createSynonymRelationshipDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
-//
-// formFactory.createHorizontalSeparator(parent, SWT.BORDER);
-// }
-
- ParsingMessagesSection parsingMessagesSection = formFactory.createParsingMessagesSection(getConversationHolder(), parent, this, ExpandableComposite.EXPANDED);
+ addPart(protologSection);
+ addPart(typeDesignationSection);
+ addPart(nameRelationshipSection);
+ }
+ addPart(parsingMessagesSection);
addPart(taxonBaseDetailSection);
addPart(nonViralNameSection);
addPart(nomenclaturalStatusSection);
- addPart(protologSection);
addPart(referenceDetailSection);
- addPart(typeDesignationSection);
- addPart(nameRelationshipSection);
-// if(synonymRelationshipSection!=null){
-// addPart(synonymRelationshipSection);
-// }
- addPart(parsingMessagesSection);
}
- /**
- * createNameSections
- *
- * @param parent
- */
private void createNameSections(RootElement parent) {
destroySections();
- NonViralNameDetailSection nonViralNameSection = formFactory.createNonViralNameDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
-
- formFactory.createHorizontalSeparator(parent, SWT.BORDER);
-
- NomenclaturalReferenceDetailSection referenceDetailSection = formFactory.createNomenclaturalReferenceDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
-
- formFactory.createHorizontalSeparator(parent, SWT.BORDER);
-
- NomenclaturalStatusSection nomenclaturalStatusSection = formFactory.createNomenclaturalStatusSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
-
- formFactory.createHorizontalSeparator(parent, SWT.BORDER);
-
- ProtologueSection protologSection = formFactory.createProtologueSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
-
+ NonViralNameDetailSection nonViralNameSection = formFactory.createNonViralNameDetailSection(getConversationHolder(), parent, this,
+ ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
- TypeDesignationSection typeDesignationSection = formFactory.createTypeDesignationSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
-
+ NomenclaturalReferenceDetailSection referenceDetailSection = formFactory.createNomenclaturalReferenceDetailSection(getConversationHolder(), parent, this,
+ ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
- NameRelationshipDetailSection nameRelationshipSection = formFactory.createNameRelationshipDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
-
+ NomenclaturalStatusSection nomenclaturalStatusSection = formFactory.createNomenclaturalStatusSection(getConversationHolder(), parent,
+ ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
addPart(nonViralNameSection);
addPart(nomenclaturalStatusSection);
- addPart(protologSection);
addPart(referenceDetailSection);
- addPart(typeDesignationSection);
- addPart(nameRelationshipSection);
+//TODO RL
+ if(!PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.IS_RL)){
+ ProtologueSection protologSection = formFactory.createProtologueSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
+ formFactory.createHorizontalSeparator(parent, SWT.BORDER);
+
+ TypeDesignationSection typeDesignationSection = formFactory.createTypeDesignationSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
+ formFactory.createHorizontalSeparator(parent, SWT.BORDER);
+
+ NameRelationshipDetailSection nameRelationshipSection = formFactory.createNameRelationshipDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
+ formFactory.createHorizontalSeparator(parent, SWT.BORDER);
+ addPart(protologSection);
+ addPart(typeDesignationSection);
+ addPart(nameRelationshipSection);
+ }
}
- /**
- * createReferenceSections
- *
- * @param parent
- */
private void createReferenceSections(RootElement parent) {
destroySections();
- ReferenceDetailSection referenceDetailSection = formFactory.createReferenceDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
+ ReferenceDetailSection referenceDetailSection = formFactory.createReferenceDetailSection(getConversationHolder(), parent, this,
+ ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
addPart(referenceDetailSection);
}
- /**
- * createTeamOrPersonBaseDetailSection
- *
- * @param parent
- */
private void createTeamOrPersonBaseDetailSection(RootElement parent) {
destroySections();
TeamOrPersonBaseDetailSection teamOrPersonBaseDetailSection = formFactory.createTeamOrPersonBaseDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
addPart(teamOrPersonBaseDetailSection);
}
- /**
- * createTeamDetailSection
- *
- * @param parent
- */
private void createTeamDetailSection(RootElement parent) {
destroySections();
TeamDetailSection teamDetailSection = formFactory.createTeamDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
addPart(teamDetailSection);
}
- /**
- * createPersonDetailSection
- *
- * @param parent
- */
private void createPersonDetailSection(RootElement parent) {
destroySections();
PersonDetailSection personDetailSection = formFactory.createPersonDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
addPart(personDetailSection);
}
- /**
- * createDescriptionElementSection
- *
- * @param parent
- */
private void createDescriptionElementSection(RootElement parent) {
destroySections();
addPart(descriptionElementMediaSection);
}
- /**
- * createDescriptionSection
- *
- * @param parent
- */
private void createDescriptionSection(RootElement parent) {
destroySections();
DescriptionDetailSection descriptionDetailSection = formFactory.createDescriptionDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
addPart(scopeSection);
}
- /**
- * createDescriptionSection
- *
- * @param parent
- */
private void createSpecimenDescriptionSection(RootElement parent) {
destroySections();
DescriptionDetailSection descriptionDetailSection = formFactory.createDescriptionDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
addPart(descriptionDetailSection);
}
- /**
- * Creates the use Description section
- *
- * @param parent
- */
private void createUseDescriptionSection(RootElement parent) {
destroySections();
DescriptionDetailSection descriptionDetailSection = formFactory.createDescriptionDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
}
-
- /**
- * @param rootElement
- */
private void createImageGallerySection(RootElement parent) {
destroySections();
DescriptionDetailSection descriptionDetailSection = formFactory.createDescriptionDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
addPart(descriptionDetailSection);
}
- /**
- * createMediaElementSection
- *
- * @param parent
- */
-
private void createMediaElementSection(RootElement parent) {
destroySections();
addPart(mediaDetailSection);
}
- /**
- * createDerivedUnitBaseElementSection
- *
- * @param parent
- */
private void createDerivedUnitBaseElementSection(RootElement parent) {
destroySections();
DerivedUnitGeneralDetailSection derivedUnitGeneralDetailSection = formFactory.createDerivedUnitGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
+ //TODO for DerivateEditor do not use facade anymore to avoid this special case handling #4539
+ if(!(AbstractUtility.getActivePart() instanceof IDerivedUnitFacadePart)){
+ derivedUnitGeneralDetailSection.setShowOnlyDerivedUnitData(true);
+ }
+ addPart(derivedUnitGeneralDetailSection);
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
- GatheringEventDetailSection gatheringEventDetailSection = formFactory.createGatheringEventDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
+ DerivedUnitBaseDetailSection derivedUnitBaseDetailSection = formFactory.createDerivedUnitBaseDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
+ addPart(derivedUnitBaseDetailSection);
- formFactory.createHorizontalSeparator(parent, SWT.BORDER);
+ //for editors working with facades
+ if(AbstractUtility.getActivePart() instanceof IDerivedUnitFacadePart){
+ formFactory.createHorizontalSeparator(parent, SWT.BORDER);
+ GatheringEventDetailSection gatheringEventDetailSection = formFactory.createGatheringEventDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
+ addPart(gatheringEventDetailSection);
- FieldUnitDetailSection fieldUnitDetailSection = formFactory.createFieldUnitDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
-
- formFactory.createHorizontalSeparator(parent, SWT.BORDER);
+ formFactory.createHorizontalSeparator(parent, SWT.BORDER);
+ FieldUnitDetailSection fieldUnitDetailSection = formFactory.createFieldUnitDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
+ addPart(fieldUnitDetailSection);
+ }
+ else{
- DerivedUnitBaseDetailSection derivedUnitBaseDetailSection = formFactory.createDerivedUnitBaseDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
+ if(PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_TAXON_ASSOCIATIONS)){
+ formFactory.createHorizontalSeparator(parent, SWT.BORDER);
+ TaxonAssociationDetailSection taxonAssociationDetailSection = formFactory.createTaxonAssociationDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
+ addPart(taxonAssociationDetailSection);
+ }
+ formFactory.createHorizontalSeparator(parent, SWT.BORDER);
+ IdentifierDetailSection identifierDetailSection = formFactory.createIdentifierDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
+ addPart(identifierDetailSection);
+ }
+ if(!PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.DETERMINATION_ONLY_FOR_FIELD_UNITS)){
+ formFactory.createHorizontalSeparator(parent, SWT.BORDER);
+ DeterminationDetailSection determinationDetailSection = formFactory.createDeterminationDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
+ addPart(determinationDetailSection);
+ }
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
-
- DeterminationDetailSection determinationDetailSection = formFactory.createDeterminationDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
-
- addPart(derivedUnitGeneralDetailSection);
- addPart(gatheringEventDetailSection);
- addPart(fieldUnitDetailSection);
- addPart(derivedUnitBaseDetailSection);
- addPart(determinationDetailSection);
+ DerivedUnitTypeDesignationSection derivedUnitTypeDesignationSection = formFactory.createDerivedUnitTypeDesignationSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
+ addPart(derivedUnitTypeDesignationSection);
}
addPart(fielUnitGeneralDetailSection);
addPart(gatheringEventDetailSection);
addPart(fieldUnitDetailSection);
- }
-
- private void createPreservedSpecimenSpecimenSection(RootElement parent) {
- destroySections();
-
- PreservedSpecimenGeneralDetailSection section = formFactory.createPreservedSpecimenGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
-
- formFactory.createHorizontalSeparator(parent, SWT.BORDER);
- PreservedSpecimenDetailSection derivedUnitBaseDetailSection = formFactory.createPreservedSpecimenDetailsSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
-
- formFactory.createHorizontalSeparator(parent, SWT.BORDER);
-
- PreservedSpecimenDeterminationDetailSection determinationDetailSection = formFactory.createPreservedSpecimenDeterminationDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
-
- addPart(section);
- addPart(derivedUnitBaseDetailSection);
- addPart(determinationDetailSection);
+ if(PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.DETERMINATION_ONLY_FOR_FIELD_UNITS)){
+ formFactory.createHorizontalSeparator(parent, SWT.BORDER);
+ DeterminationDetailSection determinationDetailSection = formFactory.createDeterminationDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
+ addPart(determinationDetailSection);
+ }
}
private void createTissueSampleSection(RootElement parent) {
TissueSampleGeneralDetailSection section = formFactory.createTissueSampleGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
+ formFactory.createHorizontalSeparator(parent, SWT.BORDER);
+
+ SampleDesignationDetailSection sampleDesignationDetailSection = formFactory.createSampleDesignationDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
+
addPart(section);
+ addPart(sampleDesignationDetailSection);
}
private void createDnaSampleSection(RootElement parent) {
destroySections();
+
DnaSampleGeneralDetailSection section = formFactory.createDnaSampleGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
- addPart(section);
- }
+ formFactory.createHorizontalSeparator(parent, SWT.BORDER);
- private void createAmplificationSection(RootElement parent) {
- destroySections();
- AmplificationGeneralDetailSection generalSection = formFactory.createAmplificationGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
+ DnaSamplePreparationPreservationSection preparationPreservationSection = formFactory.createDnaSamplePreparationPreservationSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
- AmplificationPrimerDetailSection primerSection = formFactory.createAmplificationPrimerDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
+ DnaQualityDetailSection qualitySection = formFactory.createDnaQualityDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
- AmplificationCloningDetailSection cloningSection = formFactory.createAmplificationCloningDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
+ SampleDesignationDetailSection sampleDesignationDetailSection = formFactory.createSampleDesignationDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
-
- addPart(generalSection);
- addPart(primerSection);
- addPart(cloningSection);
+ addPart(section);
+ addPart(preparationPreservationSection);
+ addPart(qualitySection);
+ addPart(sampleDesignationDetailSection);
}
private void createSequenceSection(RootElement parent) {
destroySections();
+
SequenceGeneralDetailSection section = formFactory.createSequenceGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
- addPart(section);
- }
+ formFactory.createHorizontalSeparator(parent, SWT.BORDER);
- private void createSingleReadSection(RootElement parent) {
- destroySections();
- SingleReadGeneralDetailSection section = formFactory.createSingleReadGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
+ SequenceReferenceCollectionDetailSection referenceSection = formFactory.createSequenceReferenceCollectionDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
- addPart(section);
- }
+ formFactory.createHorizontalSeparator(parent, SWT.BORDER);
+
+ SequenceContigFileCollectionDetailSection contigFileSection = formFactory.createSequenceContigFileCollectionDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
- private void createSpecimenScanSection(RootElement parent) {
- destroySections();
- SpecimenScanGeneralDetailSection section = formFactory.createSpecimenScanGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
addPart(section);
+ addPart(referenceSection);
+ addPart(contigFileSection);
}
- private void createLivingPlantPhotoSection(RootElement parent) {
+ private void createSingleReadSection(RootElement parent) {
destroySections();
- LivingPlantPhotoGeneralDetailSection section = formFactory.createLivingPlantPhotoGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
+ SingleReadGeneralDetailSection section = formFactory.createSingleReadGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
addPart(section);
+
+ formFactory.createHorizontalSeparator(parent, SWT.BORDER);
+
+ SingleReadPherogramCollectionDetailSection pherogramSection = formFactory.createSingleReadPherogramCollectionDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
+ addPart(pherogramSection);
+
}
private void createMediaSpecimenSection(RootElement parent) {
destroySections();
- MediaSpecimenGeneralDetailSection section = formFactory.createMediaSpecimenGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
- addPart(section);
- }
+ MediaSpecimenGeneralDetailSection generalSection = formFactory.createMediaSpecimenGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
+ addPart(generalSection);
+
+ formFactory.createHorizontalSeparator(parent, SWT.BORDER);
+ RightsSection rightsSection = formFactory.createRightsSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
+ addPart(rightsSection);
+ }
- /**
- * @param rootElement
- */
private void createFeatureDistributionSection(RootElement parent) {
destroySections();
addPart(featureDistributionSection);
}
- /**
- * createPolytomousKeyNodeSection
- *
- * @param parent
- */
private void createPolytomousKeyNodeSection(RootElement parent) {
destroySections();
- PolytomousKeyDetailSection polytomousKeyDetailSection = formFactory.createPolytomousKeyDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.COMPACT);
+ PolytomousKeyDetailSection polytomousKeyDetailSection = formFactory.createPolytomousKeyDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
PolytomousKeyNodeDetailSection polytomousKeyNodeDetailSection = formFactory.createPolytomousKeyNodeDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
- formFactory.createHorizontalSeparator(parent, SWT.BORDER);
-
- TaxonomicScopeSection taxonomicScopeSection = formFactory.createTaxonomicScopeSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.COMPACT);
-
addPart(polytomousKeyDetailSection);
addPart(polytomousKeyNodeDetailSection);
- addPart(taxonomicScopeSection);
}
- /**
- * create the UseRecordSection
- *
- * @param parent
- */
private void createUseRecordSection(RootElement parent) {
destroySections();
}
- /**
- * createUserSection
- *
- * @param parent
- */
private void createUserSection(RootElement parent) {
destroySections();
addPart(groupByUserDetailSection);
}
- /**
- * createTaxonRelationshipSection
- *
- * @param parent
- */
private void createTaxonRelationshipSection(RootElement parent) {
destroySections();
addPart(referencedEntityBaseDetailSection);
}
- /**
- * @param rootElement
- */
private void createTermVocabularySection(RootElement parent) {
destroySections();
addPart(termVocabularyDetailSection);
}
- /**
- * createDefinedTermSection
- *
- * @param parent
- */
private void createDefinedTermSection(RootElement parent) {
destroySections();
- AbstractFormSection definedTermDetailSection = formFactory.createDefinedTermDetailSection(getInput().getClass(), getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
+ AbstractFormSection<?> definedTermDetailSection = formFactory.createDefinedTermDetailSection(getInput().getClass(), getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
addPart(definedTermDetailSection);
}
BGBM BDI Projects / taxeditor.git / blobdiff