package eu.etaxonomy.taxeditor;\r
\r
import java.net.URL;\r
-import java.util.Collection;\r
import java.util.HashMap;\r
-import java.util.HashSet;\r
-import java.util.Map;\r
-import java.util.ResourceBundle;\r
+import java.util.Locale;\r
import java.util.Set;\r
-import java.util.UUID;\r
\r
import org.apache.log4j.Logger;\r
-import org.eclipse.core.databinding.observable.Realm;\r
-import org.eclipse.core.databinding.observable.list.WritableList;\r
-import org.eclipse.core.databinding.observable.set.IObservableSet;\r
-import org.eclipse.core.databinding.observable.set.WritableSet;\r
import org.eclipse.core.runtime.FileLocator;\r
import org.eclipse.core.runtime.IPath;\r
+import org.eclipse.core.runtime.IStatus;\r
+import org.eclipse.core.runtime.MultiStatus;\r
import org.eclipse.core.runtime.Path;\r
-import org.eclipse.jface.databinding.swt.SWTObservables;\r
-import org.eclipse.jface.preference.IPreferenceStore;\r
+import org.eclipse.core.runtime.Status;\r
+import org.eclipse.jface.dialogs.ErrorDialog;\r
import org.eclipse.jface.resource.FontRegistry;\r
import org.eclipse.jface.resource.ImageDescriptor;\r
import org.eclipse.jface.resource.ImageRegistry;\r
import org.eclipse.swt.graphics.FontData;\r
import org.eclipse.swt.graphics.Image;\r
import org.eclipse.swt.widgets.Display;\r
-import org.eclipse.ui.forms.FormColors;\r
+import org.eclipse.swt.widgets.Tree;\r
import org.eclipse.ui.plugin.AbstractUIPlugin;\r
+import org.eclipse.ui.views.properties.PropertySheetPage;\r
import org.osgi.framework.BundleContext;\r
-import org.springframework.transaction.TransactionStatus;\r
\r
import eu.etaxonomy.cdm.api.application.CdmApplicationController;\r
-import eu.etaxonomy.cdm.api.service.IDescriptionService;\r
-import eu.etaxonomy.cdm.api.service.INameService;\r
-import eu.etaxonomy.cdm.api.service.ITaxonService;\r
-import eu.etaxonomy.cdm.database.CdmDataSource;\r
import eu.etaxonomy.cdm.database.DataSourceNotFoundException;\r
import eu.etaxonomy.cdm.database.DbSchemaValidation;\r
import eu.etaxonomy.cdm.database.ICdmDataSource;\r
-import eu.etaxonomy.cdm.model.agent.Person;\r
-import eu.etaxonomy.cdm.model.common.Language;\r
-import eu.etaxonomy.cdm.model.common.OrderedTermVocabulary;\r
-import eu.etaxonomy.cdm.model.common.TermVocabulary;\r
import eu.etaxonomy.cdm.model.common.init.TermNotFoundException;\r
-import eu.etaxonomy.cdm.model.description.Feature;\r
-import eu.etaxonomy.cdm.model.name.BotanicalName;\r
-import eu.etaxonomy.cdm.model.name.NameRelationshipType;\r
-import eu.etaxonomy.cdm.model.name.NomenclaturalStatus;\r
-import eu.etaxonomy.cdm.model.name.NomenclaturalStatusType;\r
-import eu.etaxonomy.cdm.model.name.Rank;\r
-import eu.etaxonomy.cdm.model.reference.ReferenceBase;\r
-import eu.etaxonomy.cdm.model.taxon.Taxon;\r
-import eu.etaxonomy.taxeditor.model.CdmUtil;\r
-import eu.etaxonomy.taxeditor.navigation.TaxonomicTreeView;\r
-import eu.etaxonomy.taxeditor.navigation.TaxonomicTreeViewer;\r
-\r
+import eu.etaxonomy.taxeditor.controller.GlobalController;\r
+import eu.etaxonomy.taxeditor.datasource.CdmDataSourceRepository;\r
+import eu.etaxonomy.taxeditor.datasource.CdmTransactionController;\r
+import eu.etaxonomy.taxeditor.model.CdmSessionDataRepository;\r
/**\r
* The class controlling the plug-in life cycle.\r
* </p>\r
* <ul>\r
* <li>Initializes datastore as necessary.</li>\r
+ * <li>Initializes CDM application controller.</li>\r
* <li>Initializes default preferences.</li>\r
- * <li>Gateway to CDM service layer.</li>\r
- * <li>Stores taxa for application session.</li>\r
* <li>Stores registries for colors, fonts, images.</li>\r
* </ul>\r
* \r
// private DbSchemaValidation dbSchemaValidation = DbSchemaValidation.VALIDATE;\r
private DbSchemaValidation dbSchemaValidation = DbSchemaValidation.UPDATE;\r
\r
- /**\r
- * The constructor\r
- */\r
- public TaxEditorPlugin() {\r
- logger.fatal("Fatal");\r
- logger.error("Error");\r
- logger.debug("Debug");\r
- logger.info("Info");\r
- logger.warn("Warn");\r
- logger.trace("Trace");\r
- }\r
-\r
/*\r
* (non-Javadoc)\r
* \r
* @see org.eclipse.ui.plugin.AbstractUIPlugin#start(org.osgi.framework.BundleContext)\r
*/\r
public void start(BundleContext context) throws Exception {\r
+ \r
super.start(context);\r
plugin = this;\r
+ \r
+ // Check whether this is the first time the application has ever been run\r
+ checkInitialExecution();\r
\r
- boolean initDatastore = false;\r
-\r
- // If the preferences INITIALIZED has not been set, the IF clause\r
- // will return false, i.e. datastore will be initialized first\r
- // time the application is run after being installed.\r
- boolean initialized = getPreferenceStore()\r
- .getBoolean(ITaxEditorConstants.INITIALIZED);\r
+ // Initialize application controller\r
+ initApplicationController();\r
\r
-// initialized = false; // to re-init db, uncomment this line\r
- if (!initialized) {\r
- logger.warn("Initializing datastore");\r
- initDatastore = true;\r
-\r
- getPreferenceStore()\r
- .setValue(ITaxEditorConstants.INITIALIZED, true);\r
- } else {\r
- logger.warn("Datastore already initialized");\r
- }\r
-\r
- if (initDatastore) {\r
- dbSchemaValidation = DbSchemaValidation.CREATE;\r
-// initDatastore();\r
- }\r
-\r
- cdmApp = getCdmApp();\r
-\r
-// if (initDatastore) {\r
-// initDatastore();\r
-// }\r
+ // Start a transaction\r
+ CdmTransactionController.startTransaction();\r
\r
+ // Forgot what this is ...\r
+ Locale locale = new Locale("en", "", "icbn");\r
+ Locale.setDefault(locale);\r
}\r
\r
+ \r
/*\r
* (non-Javadoc)\r
* \r
* @see org.eclipse.ui.plugin.AbstractUIPlugin#stop(org.osgi.framework.BundleContext)\r
*/\r
public void stop(BundleContext context) throws Exception {\r
- stopTransaction();\r
+ CdmTransactionController.commitTransaction();\r
plugin = null;\r
super.stop(context);\r
\r
disposeColors();\r
}\r
\r
- void initDatastore() {\r
-\r
- boolean useSoraya = true;\r
- // useSoraya = false;\r
- Taxon genusTaxon;\r
- if (useSoraya) {\r
- genusTaxon = getSorayasGenusTaxon();\r
- } else {\r
-\r
- BotanicalName botanicalName = BotanicalName.NewInstance(Rank\r
- .GENUS());\r
- botanicalName.setTitleCache("Hieracium L.");\r
- botanicalName.setGenusOrUninomial("Hieracium");\r
- botanicalName.setCombinationAuthorTeam(Person.NewInstance());\r
- botanicalName.getCombinationAuthorTeam()\r
- .setNomenclaturalTitle("L.");\r
- genusTaxon = Taxon.NewInstance(botanicalName, CdmUtil\r
- .getSessionDefaultSec());\r
-\r
- BotanicalName botSpecies = BotanicalName\r
- .NewInstance(Rank.SPECIES());\r
- botSpecies.setTitleCache("Hieracium asturianum Pau");\r
- botSpecies.setGenusOrUninomial("Hieracium");\r
- botSpecies.setSpecificEpithet("asturianum");\r
- botSpecies.setCombinationAuthorTeam(Person.NewInstance());\r
- botSpecies.getCombinationAuthorTeam().setNomenclaturalTitle("Pau");\r
- Taxon childTaxon = Taxon.NewInstance(botSpecies, null);\r
- childTaxon.setTaxonomicParent(genusTaxon, null, null);\r
-\r
- BotanicalName botSpecies2 = BotanicalName.NewInstance(Rank\r
- .SPECIES());\r
- botSpecies2.setTitleCache("Hieracium wolffii Zahn");\r
- botSpecies2.setGenusOrUninomial("Hieracium");\r
- botSpecies2.setSpecificEpithet("wolffii");\r
- botSpecies2.setCombinationAuthorTeam(Person.NewInstance());\r
- botSpecies2.getCombinationAuthorTeam()\r
- .setNomenclaturalTitle("Zahn");\r
- Taxon childTaxon2 = Taxon.NewInstance(botSpecies2, CdmUtil\r
- .getSessionDefaultSec());\r
- // childTaxon2.setName(botSpecies2);\r
- // childTaxon2.setSec(null);\r
- childTaxon2.setTaxonomicParent(genusTaxon, null, null);\r
-\r
- // Add some name relations to botSpecies2\r
- botSpecies2.addRelationshipFromName(botSpecies,\r
- NameRelationshipType.BASIONYM(), null);\r
- botSpecies2.addRelationshipToName(botSpecies, NameRelationshipType\r
- .REPLACED_SYNONYM(), null);\r
- logger.warn("Name relations created");\r
-\r
- // Add name status to botSpecies2\r
- botSpecies2.addStatus(NomenclaturalStatus\r
- .NewInstance(NomenclaturalStatusType.NOVUM()));\r
- logger.warn("Nom. status created");\r
- }\r
-\r
- getCdmApp().getTaxonService().saveTaxon(genusTaxon);\r
-\r
- // System.exit(-1);\r
- }\r
-\r
/**\r
* Returns the shared instance\r
* \r
return plugin;\r
}\r
\r
- /***************************************************************************\r
- * CDM SERVICES\r
- **************************************************************************/\r
- /**\r
- * All CDM services are called via the application controller\r
- */\r
- private CdmApplicationController cdmApp;\r
- private TransactionStatus txStatus;\r
-\r
- public CdmApplicationController getCdmApp() {\r
- if (cdmApp == null) {\r
- try {\r
- ICdmDataSource ds =\r
- CdmDataSource.NewH2EmbeddedInstance("cdm", "sa", "");\r
-// CdmDataSource.NewMySqlInstance("192.168.2.10", "cdm_test_andreasM2", "edit", "wp5");\r
- \r
- // Is this the problem?\r
- cdmApp = CdmApplicationController\r
- .NewInstance(ds, dbSchemaValidation);\r
- \r
- \r
-// cdmApp = CdmApplicationController\r
-// .NewInstance(dbSchemaValidation);\r
-\r
- startTransaction();\r
- Object txStatus = cdmApp.startTransaction();\r
- // cdmApp.commitTransaction((TransactionStatus) txStatus);\r
-\r
- } catch (DataSourceNotFoundException e) {\r
- // TODO Auto-generated catch block\r
- e.printStackTrace();\r
- } catch (TermNotFoundException e) {\r
- // TODO Auto-generated catch block\r
- e.printStackTrace();\r
- }\r
- }\r
- return cdmApp;\r
- }\r
-\r
- public void startTransaction() {\r
- if (cdmApp != null) {\r
- txStatus = cdmApp.startTransaction();\r
- }\r
- }\r
-\r
- public void stopTransaction() {\r
- if (txStatus != null) {\r
- cdmApp.commitTransaction(txStatus);\r
- txStatus = null;\r
- }\r
- }\r
-\r
- private ITaxonService taxonService;\r
-\r
- public ITaxonService getTaxonService() {\r
- if (taxonService == null) {\r
- taxonService = getCdmApp().getTaxonService();\r
+ private void checkInitialExecution() {\r
+ \r
+ // Check in the prefs store whether the application (i.e. its default\r
+ // data source) has been initialized\r
+ boolean initialized = false;\r
+ if (getPreferenceStore().contains(ITaxEditorConstants.INITIALIZED)) {\r
+ initialized = getPreferenceStore().getBoolean(\r
+ ITaxEditorConstants.INITIALIZED);\r
}\r
- return taxonService;\r
- }\r
\r
- private INameService nameService;\r
-\r
- public INameService getNameService() {\r
- if (nameService == null) {\r
- nameService = getCdmApp().getNameService();\r
+ // If not ...\r
+ if (!initialized) {\r
+ \r
+ // ... set validation to CREATE\r
+ logger.warn("Initializing datastore");\r
+ dbSchemaValidation = DbSchemaValidation.CREATE;\r
+ \r
+ // ... and note in prefs that application has been initialized\r
+ getPreferenceStore().setValue(ITaxEditorConstants.INITIALIZED, true);\r
}\r
- return nameService;\r
}\r
\r
- private IDescriptionService descriptionService;\r
- \r
- public IDescriptionService getDescriptionService() {\r
- if (descriptionService == null) {\r
- descriptionService = getCdmApp().getDescriptionService();\r
- }\r
- return descriptionService;\r
- \r
- }\r
-\r
/***************************************************************************\r
- * OBSERVABLE LISTS\r
+ * CDM SERVICES\r
**************************************************************************/\r
\r
- private WritableList observableRecentNamesList = null;\r
- private WritableList observableFavoritesList = null;\r
+ /**\r
+ * All CDM services are called via the application controller\r
+ */\r
+ private CdmApplicationController applicationController;\r
\r
- public WritableList getObservableRecentNamesList() {\r
- if (observableRecentNamesList == null) {\r
- observableRecentNamesList = new WritableList();\r
+ private CdmApplicationController initApplicationController() {\r
+ \r
+ // Get the "current" - i.e. most recently used - data source\r
+ ICdmDataSource cdmDatasource = CdmDataSourceRepository.getDefault().\r
+ getCurrentDataSource();\r
+ \r
+ // Initialize the controller with the data source\r
+ try {\r
+ applicationController = CdmApplicationController.NewInstance(cdmDatasource, dbSchemaValidation);\r
+ } catch (DataSourceNotFoundException e) {\r
+ // TODO user-friendly failure here\r
+ e.printStackTrace();\r
+ } catch (TermNotFoundException e) {\r
+ // TODO Auto-generated catch block\r
+ e.printStackTrace();\r
}\r
- return observableRecentNamesList;\r
+ \r
+ // Set application controller for objects that use it \r
+ CdmTransactionController.setApplicationController(applicationController);\r
+ CdmDataSourceRepository.getDefault().setCdmApplicationController(applicationController);\r
+ CdmSessionDataRepository.getDefault().setApplicationController(applicationController);\r
+ \r
+// // Terms have to be initialized explicitly as of now\r
+// logger.warn("MAC Workaround enabled!!");\r
+// DefaultTermInitializer vocabularyStore = new DefaultTermInitializer();\r
+// vocabularyStore.initialize();\r
+ \r
+ return applicationController;\r
}\r
-\r
- public WritableList getObservableFavoritesList() {\r
- if (observableFavoritesList == null) {\r
- observableFavoritesList = new WritableList();\r
+ \r
+ public CdmApplicationController getApplicationController() {\r
+ if (applicationController == null) {\r
+ throw new IllegalStateException("CdmApplicationController not yet set.");\r
}\r
- return observableFavoritesList;\r
+ return applicationController;\r
}\r
\r
/***************************************************************************\r
return getImageRegistry().get(key);\r
}\r
\r
- // Resource bundle.\r
- private ResourceBundle resourceBundle;\r
- private FormColors formColors;\r
+ /**\r
+ * Gets an image for the given URL. Adds the image to the registry as needed.\r
+ * \r
+ * @param url\r
+ * @return\r
+ */\r
+ public Image getImage(URL url) { \r
+ \r
+ String key = url.toString();\r
+ ImageRegistry registry = getImageRegistry();\r
\r
+ Image image = registry.get(key);\r
+ \r
+ if (image == null) {\r
+ ImageDescriptor desc = ImageDescriptor.createFromURL(url);\r
+ \r
+// logger.warn(ImageDescriptor.getMissingImageDescriptor().getClass());\r
+// logger.warn(desc.getClass());\r
+// \r
+// if (ImageDescriptor.getMissingImageDescriptor().equals(desc)) {\r
+// logger.warn("img not found");\r
+// }\r
+ \r
+ registry.put(key, desc);\r
+ try {\r
+ image = registry.get(key);\r
+ } catch (Exception e) {\r
+ // TODO Auto-generated catch block\r
+ e.printStackTrace();\r
+ }\r
+ }\r
+ \r
+ return image;\r
+ }\r
+ \r
protected void initializeImageRegistry(ImageRegistry registry) {\r
registerImage(registry, ITaxEditorConstants.EDIT_ICON, "edit_16x16.ico");\r
registerImage(registry, ITaxEditorConstants.WARNING_ICON,\r
"heterosyn_original_no_bg.gif");\r
registerImage(registry, ITaxEditorConstants.MISAPPLIED_NAME_ICON,\r
"misapplied_no_bg.gif");\r
+ registerImage(registry, ITaxEditorConstants.CONCEPT_ICON,\r
+ "concept_no_bg.gif");\r
registerImage(registry, ITaxEditorConstants.AUTONYM_ICON,\r
"autonym_no_bg.gif");\r
registerImage(registry, ITaxEditorConstants.BASIONYM_ICON,\r
"quick_add.gif");\r
registerImage(registry, ITaxEditorConstants.TAXON_TO_SYNONYM_ICON,\r
"tax_to_syn.gif");\r
+ registerImage(registry, ITaxEditorConstants.ERROR_ANNOTATION_ICON,\r
+ "error_co.gif");\r
+ registerImage(registry, ITaxEditorConstants.EDIT_BITMAP_ICON,\r
+ "256color_16x16.bmp");\r
}\r
\r
private void registerImage(ImageRegistry registry, String key,\r
} catch (Exception e) {\r
}\r
}\r
+ \r
\r
/***************************************************************************\r
* FONT REGISTRY\r
new FontData[] { new FontData("Georgia", 10, SWT.NONE) });\r
fontRegistry.put(ITaxEditorConstants.MISAPPLIEDNAME_FONT,\r
new FontData[] { new FontData("Georgia", 10, SWT.NONE) });\r
+ fontRegistry.put(ITaxEditorConstants.CONCEPT_FONT,\r
+ new FontData[] { new FontData("Georgia", 10, SWT.NONE) });\r
fontRegistry.put(ITaxEditorConstants.CHOOSE_NAME_TEXT_FONT,\r
new FontData[] { new FontData("Arial", 12, SWT.BOLD) });\r
fontRegistry.put(ITaxEditorConstants.DEFAULT_PROMPT_FONT,\r
- new FontData[] { new FontData("Georgia", 10, SWT.ITALIC) });\r
+ new FontData[] { new FontData("Georgia", 10, SWT.ITALIC) }); \r
}\r
return fontRegistry;\r
}\r
return getFontRegistry().get(key);\r
}\r
\r
+ /**\r
+ * @param font\r
+ */\r
+ public Font italicizeFont(Font font) {\r
+ FontData fontData = font.getFontData()[0];\r
+ fontData.setStyle(fontData.getStyle() | SWT.ITALIC);\r
+ Font italFont = new Font(Display.getDefault(), fontData);\r
+ \r
+ int i = 0;\r
+ String fontName = "italic";\r
+ Set keySet = fontRegistry.getKeySet();\r
+ while (keySet.contains(fontName + i)) {\r
+ i++;\r
+ }\r
+ fontRegistry.put(fontName + i, italFont.getFontData());\r
+ \r
+ return italFont;\r
+ }\r
+\r
/***************************************************************************\r
* COLOR MAP\r
**************************************************************************/\r
- private static HashMap<String, Color> colorMap;\r
+ private static HashMap<String, Color> colorRegistry;\r
\r
public Color getColor(String key) {\r
- return getColorMap().get(key);\r
+ return getColorRegistry().get(key);\r
}\r
\r
- private HashMap<String, Color> getColorMap() {\r
- if (colorMap == null) {\r
- colorMap = new HashMap<String, Color>();\r
+ private HashMap<String, Color> getColorRegistry() {\r
+ if (colorRegistry == null) {\r
+ colorRegistry = new HashMap<String, Color>();\r
\r
- colorMap.put(ITaxEditorConstants.GROUP_GRAY_BKG_COLOR,\r
- new Color(null, 246, 246, 246));\r
+ colorRegistry.put(ITaxEditorConstants.GROUP_GRAY_BKG_COLOR,\r
+ new Color(null, 240, 240, 240));\r
+ colorRegistry.put(ITaxEditorConstants.PROP_SHEET_RED,\r
+ new Color(null, 255, 0, 0)); \r
}\r
- return colorMap;\r
+ return colorRegistry;\r
}\r
\r
private void disposeColors() {\r
- if (colorMap == null) {\r
+ if (colorRegistry == null) {\r
return;\r
}\r
- for (Color color : colorMap.values()) {\r
+ for (Color color : colorRegistry.values()) {\r
color.dispose();\r
}\r
- colorMap.clear();\r
+ colorRegistry.clear();\r
}\r
\r
/***************************************************************************\r
- * TAXONOMIC TREE\r
+ * PROPERTY SHEET\r
**************************************************************************/\r
-\r
- public ReferenceBase getSec() {\r
- return getCdmApp().getReferenceService().getReferenceByUuid(\r
- UUID.fromString("f3593c18-a8d2-4e51-bdad-0befbf8fb2d1"));\r
- }\r
-\r
- private Set<Taxon> sessionRootTaxa;\r
- /**\r
- * The taxonomic tree content provider observes this set for changes, and\r
- * makes the appropriate changes to the tree.\r
- */\r
- private IObservableSet observableSessionTaxonSet;\r
- /**\r
- * This map of taxa to their taxonomic children is used by\r
- * NameTreeContentProvider's getChildren method.\r
- * \r
- * key = taxon, value = key's child taxa Note that a map can have a key ==\r
- * null, i.e. no parent taxon\r
- */\r
- private HashMap<Taxon, Set<Taxon>> sessionTaxonomicChildrenMap;\r
-\r
- public Set<Taxon> getSessionRootTaxa() {\r
- if (sessionRootTaxa == null) {\r
- sessionRootTaxa = new HashSet<Taxon>();\r
- sessionRootTaxa.addAll(getCdmApp().getTaxonService().getRootTaxa(\r
- getSec(), null, false));\r
-// sessionRootTaxa.addAll(getCdmApp().getTaxonService().getRootTaxa(\r
-// getSec(), null, true)); \r
- addSessionTaxa(sessionRootTaxa);\r
- }\r
- return sessionRootTaxa;\r
- }\r
-\r
- private Map<Taxon, Set<Taxon>> getTaxonomicChildrenMap() {\r
- if (sessionTaxonomicChildrenMap == null) {\r
- sessionTaxonomicChildrenMap = new HashMap<Taxon, Set<Taxon>>();\r
- }\r
- return sessionTaxonomicChildrenMap;\r
- }\r
-\r
- /**\r
- * Returns a set of any child taxa for this taxon that have already been\r
- * requested during this session.\r
- * \r
- * @param parentTaxon\r
- * @return\r
- */\r
- public Set<Taxon> getSessionTaxonomicChildren(Taxon parentTaxon) {\r
- if (!getTaxonomicChildrenMap().containsKey(parentTaxon)) {\r
- if (parentTaxon == null) {\r
- getTaxonomicChildrenMap().put(parentTaxon, getSessionRootTaxa());\r
- } else {\r
- \r
- // BUG deleted taxon were re-appearing as NULL children\r
- Set<Taxon> childTaxa = new HashSet<Taxon>();\r
- for (Taxon taxon : parentTaxon.getTaxonomicChildren()) {\r
- if (taxon != null) {\r
- childTaxa.add(taxon);\r
- }\r
- }\r
- getTaxonomicChildrenMap().put(parentTaxon, childTaxa);\r
- }\r
- }\r
- return getTaxonomicChildrenMap().get(parentTaxon);\r
- }\r
-\r
- /**\r
- * @return\r
- */\r
- public IObservableSet getObservableSessionTaxa() {\r
- if (observableSessionTaxonSet == null) {\r
- Realm realm = SWTObservables.getRealm(Display.getDefault());\r
- observableSessionTaxonSet = new WritableSet(realm);\r
- }\r
- return observableSessionTaxonSet;\r
- }\r
-\r
- /**\r
- * Recursive function to clear the hashmap of a taxon's children used in\r
- * this session, and the childrens' children, etc.\r
- * \r
- * @param taxon\r
- */\r
- private void clearTaxonomicChildren(Taxon taxon) {\r
- Set<Taxon> children = getSessionTaxonomicChildren(taxon);\r
- if (children != null) {\r
- for (Taxon child : children) {\r
- clearTaxonomicChildren(child);\r
- }\r
- getTaxonomicChildrenMap().remove(taxon);\r
- getObservableSessionTaxa().removeAll(children);\r
- }\r
- }\r
-\r
- /**\r
- * Remove taxon from all session collections\r
- * \r
- * @param taxon\r
- */\r
- public void removeSessionTaxon(Taxon taxon) {\r
-\r
- // Recursively remove all children, children's children, etc.\r
- clearTaxonomicChildren(taxon);\r
-\r
- Taxon parentTaxon = taxon.getTaxonomicParent();\r
-\r
- // Remove from parent's child map, or from root taxa\r
- if (parentTaxon == null) {\r
- getSessionRootTaxa().remove(taxon);\r
- } else {\r
- getSessionTaxonomicChildren(parentTaxon).remove(taxon);\r
- }\r
-\r
- // Remove from session taxa\r
- getObservableSessionTaxa().remove(taxon);\r
- \r
- UiUtil.getTreeViewer().remove(taxon);\r
- }\r
-\r
- public void addSessionTaxa(Collection<Taxon> taxa) {\r
- for (Taxon taxon : taxa) {\r
- addSessionTaxon(taxon);\r
- }\r
- }\r
-\r
- /**\r
- * Whenever a taxon is opened, either for editing or for display in the\r
- * taxonomic tree, it should be added to the collections of taxa used during\r
- * this session.\r
- * \r
- * @param taxon\r
- */\r
- public void addSessionTaxon(Taxon taxon) {\r
-\r
- // Add taxon to session taxa if not already there\r
- if (!(getObservableSessionTaxa().contains(taxon))) {\r
- getObservableSessionTaxa().add(taxon);\r
- }\r
- \r
- Taxon parentTaxon = taxon.getTaxonomicParent();\r
-\r
- // If taxon has no parent, add it to root taxa\r
- if (parentTaxon == null) {\r
- if (!(getSessionRootTaxa().contains(taxon))) {\r
- getSessionRootTaxa().add(taxon);\r
- }\r
- }\r
-\r
- // Add taxon to its parent's child map\r
- getSessionTaxonomicChildren(parentTaxon).add(taxon);\r
- \r
- TaxonomicTreeViewer viewer = UiUtil.getTreeViewer();\r
- \r
- if (viewer != null) {\r
- \r
- if (parentTaxon == null) {\r
- viewer.setInput(getSessionRootTaxa());\r
- } else {\r
- viewer.add(parentTaxon, taxon); \r
- }\r
- \r
- }\r
- }\r
-\r
\r
-// private TaxonomicTreeView taxonomicTreeView;\r
-// \r
-// public void setTaxonomicTree(TaxonomicTreeView taxonomicTreeView) {\r
-// this.taxonomicTreeView = taxonomicTreeView;\r
-// }\r
+ private Tree propertySheetTree;\r
\r
- /***************************************************************************\r
- * RANKS\r
- **************************************************************************/\r
- OrderedTermVocabulary<Rank> rankVocabulary = null;\r
-\r
- public OrderedTermVocabulary<Rank> getRankVocabulary() {\r
- if (rankVocabulary == null) {\r
- rankVocabulary = getCdmApp().getNameService().getRankVocabulary();\r
- }\r
- return rankVocabulary;\r
+ public void setPropertySheetTree(Tree tree) {\r
+ this.propertySheetTree = tree;\r
}\r
-\r
- /***************************************************************************\r
- * NOMENCLATURAL STATUS\r
- **************************************************************************/\r
- TermVocabulary<NomenclaturalStatusType> nomStatusVocabulary = null;\r
-\r
- public TermVocabulary<NomenclaturalStatusType> getNomStatusVocabulary() {\r
- if (nomStatusVocabulary == null) {\r
- nomStatusVocabulary = getCdmApp().getNameService()\r
- .getStatusTypeVocabulary();\r
- }\r
- return nomStatusVocabulary;\r
- }\r
-\r
- /***************************************************************************\r
- * NAME RELATIONS\r
- **************************************************************************/\r
- TermVocabulary<NameRelationshipType> nameRelationshipTypeVocabulary = null;\r
-\r
- public TermVocabulary<NameRelationshipType> getNameRelationshipTypeVocabulary() {\r
- if (nameRelationshipTypeVocabulary == null) {\r
- nameRelationshipTypeVocabulary = getCdmApp().getNameService()\r
- .getNameRelationshipTypeVocabulary();\r
- }\r
- return nameRelationshipTypeVocabulary;\r
+ \r
+ public Tree getPropertySheetTree() {\r
+ return propertySheetTree;\r
}\r
\r
- public Set<NameRelationshipType> getSortedNameRelationshipTypes() {\r
- return getNameRelationshipTypeVocabulary().getTermsOrderedByLabels(\r
- Language.DEFAULT());\r
+ private PropertySheetPage propertySheetPage;\r
+ \r
+ public void setPropertySheetPage(PropertySheetPage page) {\r
+ this.propertySheetPage = page;\r
}\r
-\r
- /***************************************************************************\r
- * SORAYA DATA\r
- **************************************************************************/\r
- private Taxon getSorayasGenusTaxon() {\r
-\r
- String[] children = new String[] {\r
- "Heterospathe annectens H.E.Moore",\r
- "Heterospathe arfakiana (Becc.) H.E.Moore",\r
- "Heterospathe brevicaulis Fernando",\r
- "Heterospathe cagayanensis Becc.",\r
- "Heterospathe califrons Fernando, Palms 45: 118 (2001).",\r
- "Heterospathe clemensiae (Burret) H.E.Moore",\r
- "Heterospathe delicatula H.E.Moore",\r
- "Heterospathe dransfieldii Fernando",\r
- "Heterospathe elata Scheff.",\r
- "Heterospathe elata var. elata.",\r
- "Heterospathe elata var. guamensis Becc.",\r
- "Heterospathe elata var. palauensis (Becc.) Becc.",\r
- "Heterospathe elegans (Becc.) Becc.",\r
- "Heterospathe elmeri Becc.",\r
- "Heterospathe glabra (Burret) H.E.Moore",\r
- "Heterospathe glauca (Scheff.) H.E.Moore",\r
- "Heterospathe humilis Becc.",\r
- "Heterospathe intermedia (Becc.) Fernando",\r
- "Heterospathe kajewskii Burret",\r
- "Heterospathe ledermanniana Becc.",\r
- "Heterospathe lepidota H.E.Moore",\r
- "Heterospathe longipes (H.E.Moore) Norup",\r
- "Heterospathe macgregorii (Becc.) H.E.Moore",\r
- "Heterospathe micrantha (Becc.) H.E.Moore",\r
- "Heterospathe minor Burret",\r
- "Heterospathe muelleriana (Becc.) Becc.",\r
- "Heterospathe negrosensis Becc.",\r
- "Heterospathe obriensis (Becc.) H.E.Moore",\r
- "Heterospathe palauensis Becc.",\r
- "Heterospathe parviflora Essig",\r
- "Heterospathe philippinensis (Becc.) Becc.",\r
- // "Heterospathe phillipsii D.Fuller & Dowe", // <--------------\r
- "Heterospathe pilosa (Burret) Burret",\r
- "Heterospathe pisifera (Gaertn.) Burret",\r
- "Heterospathe pulchra H.E.Moore",\r
- "Heterospathe ramulosa Burret",\r
- "Heterospathe salomonensis Becc.",\r
- "Heterospathe scitula Fernando", "Heterospathe sensisi Becc.",\r
- "Heterospathe sibuyanensis Becc.",\r
- "Heterospathe sphaerocarpa Burret",\r
- "Heterospathe trispatha Fernando",\r
- "Heterospathe uniformis Dowe",\r
- "Heterospathe versteegiana Becc.",\r
- "Heterospathe woodfordiana Becc." };\r
-\r
- BotanicalName genusName = BotanicalName\r
- .PARSED_NAME("Heterospathe Scheff.");\r
-\r
- Taxon genusTaxon = Taxon.NewInstance(genusName, CdmUtil\r
- .getSessionDefaultSec());\r
-\r
- for (String child : children) {\r
- BotanicalName speciesName = BotanicalName.PARSED_NAME(child);\r
-\r
- Taxon childTaxon = Taxon.NewInstance(speciesName, CdmUtil\r
- .getSessionDefaultSec());\r
- childTaxon.setTaxonomicParent(genusTaxon, null, null);\r
-\r
- if (child.equals("Heterospathe elegans (Becc.) Becc.")) {\r
- BotanicalName basionym = BotanicalName\r
- .PARSED_NAME("Barkerwebbia elegans Becc.");\r
- speciesName.addRelationshipFromName(basionym,\r
- NameRelationshipType.BASIONYM(), null);\r
- childTaxon.addHomotypicSynonymName(basionym, null, null);\r
- }\r
-\r
- if (child.equals("Heterospathe humilis Becc.")) {\r
- BotanicalName synonymName = BotanicalName\r
- .PARSED_NAME("Barkerwebbia humilis (Becc.) Becc. ex Martelli");\r
- childTaxon.addHomotypicSynonymName(synonymName, null, null);\r
- }\r
- }\r
-\r
- return genusTaxon;\r
+ \r
+ public PropertySheetPage getPropertySheetPage() {\r
+ return propertySheetPage;\r
}\r
-}
\ No newline at end of file
+}\r
BGBM BDI Projects / taxeditor.git / blobdiff