Merge branch 'release/5.1.0' into develop
[taxeditor.git] / eu.etaxonomy.taxeditor.molecular.lib / META-INF / MANIFEST.MF
index d770e631e0082036bed708bef7aad602543ec282..6ba1ae93e2c772c4faef3eb3cd4892958a248aa7 100644 (file)
@@ -2,40 +2,241 @@ Manifest-Version: 1.0
 Bundle-ManifestVersion: 2
 Bundle-Name: eu.etaxonomy.taxeditor.molecular.lib
 Bundle-SymbolicName: eu.etaxonomy.taxeditor.molecular.lib;singleton:=true
-Bundle-Version: 3.8.0.qualifier
+Bundle-Version: 5.2.0.qualifier
 Bundle-ClassPath: .,
- lib/bioinfweb-commons-bio-2-SNAPSHOT.jar,
- lib/bioinfweb-commons-core-2-SNAPSHOT.jar,
- lib/bioinfweb-commons-swing-2-SNAPSHOT.jar,
- lib/bioinfweb-commons-swt-2-SNAPSHOT.jar,
- lib/core-1.9.2-SNAPSHOT.jar,
- lib/libralign-biojava1-0-SNAPSHOT.jar,
- lib/libralign-core-0-SNAPSHOT.jar,
- lib/libralign-swt-0-SNAPSHOT.jar,
- lib/sequencing-1.9.2-SNAPSHOT.jar,
- lib/tic-core-2-SNAPSHOT.jar,
- lib/tic-swt-2-SNAPSHOT.jar
-Export-Package: info.bioinfweb.commons.collections,
+ lib/owlapi-xmlutils-4.1.4.jar,
+ lib/commons-collections4-4.1.jar,
+ lib/core-1.9.2.jar,
+ lib/sequencing-1.9.2.jar,
+ lib/commons-lang3-3.5.jar,
+ lib/commons-beanutils-1.9.2.jar,
+ lib/bioinfweb-commons-java-bio-2.0.0.jar,
+ lib/bioinfweb-commons-java-core-2.2.0.jar,
+ lib/bioinfweb-commons-java-swing-2.2.0.jar,
+ lib/bioinfweb-commons-java-swt-2.0.0.jar,
+ lib/jphyloio-core-0.3.0.jar,
+ lib/tic-core-2.0.0.jar,
+ lib/tic-swt-2.0.0.jar,
+ lib/libralign-biojava1-0.4.0.jar,
+ lib/libralign-core-0.4.0.jar,
+ lib/libralign-io-0.4.0.jar,
+ lib/libralign-swt-0.4.0.jar
+Export-Package: info.bioinfweb.commons,
+ info.bioinfweb.commons.appversion,
+ info.bioinfweb.commons.beans,
+ info.bioinfweb.commons.bio,
+ info.bioinfweb.commons.changemonitor,
+ info.bioinfweb.commons.collections,
+ info.bioinfweb.commons.collections.observable,
+ info.bioinfweb.commons.graphics,
+ info.bioinfweb.commons.io,
+ info.bioinfweb.commons.log,
+ info.bioinfweb.commons.progress,
+ info.bioinfweb.commons.swing,
+ info.bioinfweb.commons.swing.scrollpaneselector,
+ info.bioinfweb.commons.swt,
+ info.bioinfweb.commons.text,
+ info.bioinfweb.jphyloio,
+ info.bioinfweb.jphyloio.dataadapters,
+ info.bioinfweb.jphyloio.dataadapters.implementations,
+ info.bioinfweb.jphyloio.dataadapters.implementations.receivers,
+ info.bioinfweb.jphyloio.dataadapters.implementations.store,
+ info.bioinfweb.jphyloio.events,
+ info.bioinfweb.jphyloio.events.meta,
+ info.bioinfweb.jphyloio.events.type,
+ info.bioinfweb.jphyloio.exception,
+ info.bioinfweb.jphyloio.factory,
+ info.bioinfweb.jphyloio.formatinfo,
+ info.bioinfweb.jphyloio.formats,
+ info.bioinfweb.jphyloio.formats.fasta,
+ info.bioinfweb.jphyloio.formats.mega,
+ info.bioinfweb.jphyloio.formats.newick,
+ info.bioinfweb.jphyloio.formats.nexml,
+ info.bioinfweb.jphyloio.formats.nexus,
+ info.bioinfweb.jphyloio.formats.nexus.blockhandlers,
+ info.bioinfweb.jphyloio.formats.nexus.commandreaders,
+ info.bioinfweb.jphyloio.formats.nexus.commandreaders.all,
+ info.bioinfweb.jphyloio.formats.nexus.commandreaders.characters,
+ info.bioinfweb.jphyloio.formats.nexus.commandreaders.sets,
+ info.bioinfweb.jphyloio.formats.nexus.commandreaders.taxa,
+ info.bioinfweb.jphyloio.formats.nexus.commandreaders.trees,
+ info.bioinfweb.jphyloio.formats.pde,
+ info.bioinfweb.jphyloio.formats.phylip,
+ info.bioinfweb.jphyloio.formats.phyloxml,
+ info.bioinfweb.jphyloio.formats.phyloxml.elementreader,
+ info.bioinfweb.jphyloio.formats.text,
+ info.bioinfweb.jphyloio.formats.xml,
+ info.bioinfweb.jphyloio.formats.xtg,
+ info.bioinfweb.jphyloio.objecttranslation,
+ info.bioinfweb.jphyloio.objecttranslation.implementations,
+ info.bioinfweb.jphyloio.utils,
+ info.bioinfweb.libralign.actions,
  info.bioinfweb.libralign.alignmentarea,
+ info.bioinfweb.libralign.alignmentarea.content,
+ info.bioinfweb.libralign.alignmentarea.label,
  info.bioinfweb.libralign.alignmentarea.order,
  info.bioinfweb.libralign.alignmentarea.paintsettings,
+ info.bioinfweb.libralign.alignmentarea.rowsarea,
  info.bioinfweb.libralign.alignmentarea.selection,
  info.bioinfweb.libralign.alignmentarea.tokenpainter,
  info.bioinfweb.libralign.dataarea,
  info.bioinfweb.libralign.dataarea.implementations,
+ info.bioinfweb.libralign.dataarea.implementations.charset,
  info.bioinfweb.libralign.dataarea.implementations.pherogram,
+ info.bioinfweb.libralign.dataarea.implementations.sequenceindex,
  info.bioinfweb.libralign.editsettings,
  info.bioinfweb.libralign.model,
  info.bioinfweb.libralign.model.adapters,
+ info.bioinfweb.libralign.model.concatenated,
+ info.bioinfweb.libralign.model.data,
  info.bioinfweb.libralign.model.events,
+ info.bioinfweb.libralign.model.exception,
+ info.bioinfweb.libralign.model.factory,
+ info.bioinfweb.libralign.model.factory.continuous,
  info.bioinfweb.libralign.model.implementations,
+ info.bioinfweb.libralign.model.implementations.decorate,
+ info.bioinfweb.libralign.model.implementations.swingundo,
+ info.bioinfweb.libralign.model.implementations.swingundo.edits,
+ info.bioinfweb.libralign.model.implementations.swingundo.edits.sequence,
+ info.bioinfweb.libralign.model.implementations.swingundo.edits.token,
  info.bioinfweb.libralign.model.tokenset,
+ info.bioinfweb.libralign.model.tokenset.continuous,
+ info.bioinfweb.libralign.model.utils,
  info.bioinfweb.libralign.multiplealignments,
  info.bioinfweb.libralign.pherogram,
+ info.bioinfweb.libralign.pherogram.distortion,
  info.bioinfweb.libralign.pherogram.model,
  info.bioinfweb.libralign.pherogram.provider,
  info.bioinfweb.libralign.pherogram.view,
  info.bioinfweb.tic,
+ info.bioinfweb.tic.exception,
  info.bioinfweb.tic.input,
- org.biojava.bio.chromatogram
+ info.bioinfweb.tic.toolkit,
+ info.bioinfweb.tic.toolkit.layoutdata,
+ org.apache.commons.beanutils,
+ org.apache.commons.beanutils.converters,
+ org.apache.commons.beanutils.expression,
+ org.apache.commons.beanutils.locale,
+ org.apache.commons.beanutils.locale.converters,
+ org.apache.commons.collections4,
+ org.apache.commons.collections4.bag,
+ org.apache.commons.collections4.bidimap,
+ org.apache.commons.collections4.collection,
+ org.apache.commons.collections4.comparators,
+ org.apache.commons.collections4.functors,
+ org.apache.commons.collections4.iterators,
+ org.apache.commons.collections4.keyvalue,
+ org.apache.commons.collections4.list,
+ org.apache.commons.collections4.map,
+ org.apache.commons.collections4.multimap,
+ org.apache.commons.collections4.multiset,
+ org.apache.commons.collections4.queue,
+ org.apache.commons.collections4.sequence,
+ org.apache.commons.collections4.set,
+ org.apache.commons.collections4.splitmap,
+ org.apache.commons.collections4.trie,
+ org.apache.commons.collections4.trie.analyzer,
+ org.apache.commons.lang3,
+ org.apache.commons.lang3.builder,
+ org.apache.commons.lang3.concurrent,
+ org.apache.commons.lang3.event,
+ org.apache.commons.lang3.exception,
+ org.apache.commons.lang3.math,
+ org.apache.commons.lang3.mutable,
+ org.apache.commons.lang3.reflect,
+ org.apache.commons.lang3.text,
+ org.apache.commons.lang3.text.translate,
+ org.apache.commons.lang3.time,
+ org.apache.commons.lang3.tuple,
+ org.biojava.bibliography,
+ org.biojava.bio,
+ org.biojava.bio.alignment,
+ org.biojava.bio.annodb,
+ org.biojava.bio.chromatogram,
+ org.biojava.bio.chromatogram.graphic,
+ org.biojava.bio.dist,
+ org.biojava.bio.dp,
+ org.biojava.bio.dp.onehead,
+ org.biojava.bio.dp.twohead,
+ org.biojava.bio.molbio,
+ org.biojava.bio.program,
+ org.biojava.bio.program.abi,
+ org.biojava.bio.program.blast2html,
+ org.biojava.bio.program.fastq,
+ org.biojava.bio.program.formats,
+ org.biojava.bio.program.gff,
+ org.biojava.bio.program.gff3,
+ org.biojava.bio.program.hmmer,
+ org.biojava.bio.program.homologene,
+ org.biojava.bio.program.indexdb,
+ org.biojava.bio.program.phred,
+ org.biojava.bio.program.scf,
+ org.biojava.bio.program.ssaha,
+ org.biojava.bio.program.ssbind,
+ org.biojava.bio.program.tagvalue,
+ org.biojava.bio.program.unigene,
+ org.biojava.bio.program.xff,
+ org.biojava.bio.program.xml,
+ org.biojava.bio.proteomics,
+ org.biojava.bio.proteomics.aaindex,
+ org.biojava.bio.search,
+ org.biojava.bio.seq,
+ org.biojava.bio.seq.db,
+ org.biojava.bio.seq.db.biofetch,
+ org.biojava.bio.seq.db.emblcd,
+ org.biojava.bio.seq.db.flat,
+ org.biojava.bio.seq.distributed,
+ org.biojava.bio.seq.filter,
+ org.biojava.bio.seq.homol,
+ org.biojava.bio.seq.impl,
+ org.biojava.bio.seq.io,
+ org.biojava.bio.seq.io.agave,
+ org.biojava.bio.seq.io.filterxml,
+ org.biojava.bio.seq.io.game,
+ org.biojava.bio.seq.io.game12,
+ org.biojava.bio.seq.projection,
+ org.biojava.bio.symbol,
+ org.biojava.bio.taxa,
+ org.biojava.directory,
+ org.biojava.naming,
+ org.biojava.ontology,
+ org.biojava.ontology.io,
+ org.biojava.ontology.obo,
+ org.biojava.stats.svm,
+ org.biojava.stats.svm.tools,
+ org.biojava.utils,
+ org.biojava.utils.automata,
+ org.biojava.utils.cache,
+ org.biojava.utils.candy,
+ org.biojava.utils.io,
+ org.biojava.utils.lsid,
+ org.biojava.utils.math,
+ org.biojava.utils.net,
+ org.biojava.utils.process,
+ org.biojava.utils.regex,
+ org.biojava.utils.stax,
+ org.biojava.utils.walker,
+ org.biojava.utils.xml,
+ org.biojavax,
+ org.biojavax.bio,
+ org.biojavax.bio.alignment,
+ org.biojavax.bio.alignment.blast,
+ org.biojavax.bio.db,
+ org.biojavax.bio.db.ncbi,
+ org.biojavax.bio.seq,
+ org.biojavax.bio.seq.io,
+ org.biojavax.bio.taxa,
+ org.biojavax.bio.taxa.io,
+ org.biojavax.ga,
+ org.biojavax.ga.exception,
+ org.biojavax.ga.functions,
+ org.biojavax.ga.impl,
+ org.biojavax.ga.util,
+ org.biojavax.ontology,
+ org.biojavax.utils,
+ org.jdesktop.swingx.scrollpaneselector,
+ org.semanticweb.owlapi.io
 Bundle-ActivationPolicy: lazy
+Import-Package: javax.swing
+Require-Bundle: org.eclipse.swt
+Bundle-RequiredExecutionEnvironment: JavaSE-1.8