import java.net.URISyntaxException;
import java.util.ArrayList;
import java.util.Arrays;
+import java.util.Collections;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
import java.util.UUID;
import org.apache.commons.lang.StringUtils;
+import org.apache.log4j.Logger;
import org.eclipse.equinox.internal.p2.ui.model.MetadataRepositoryElement;
import org.eclipse.jface.preference.IPreferenceStore;
import org.eclipse.jface.window.Window;
import org.eclipse.swt.widgets.Shell;
import org.eclipse.ui.PlatformUI;
+import eu.etaxonomy.cdm.api.application.ICdmRepository;
import eu.etaxonomy.cdm.api.facade.DerivedUnitFacadeConfigurator;
import eu.etaxonomy.cdm.api.service.IFeatureTreeService;
import eu.etaxonomy.cdm.api.service.ITermService;
import eu.etaxonomy.cdm.api.service.config.IFindTaxaAndNamesConfigurator;
import eu.etaxonomy.cdm.common.CdmUtils;
import eu.etaxonomy.cdm.hibernate.HibernateProxyHelper;
+import eu.etaxonomy.cdm.io.specimen.abcd206.in.Abcd206ImportConfigurator;
import eu.etaxonomy.cdm.model.common.ICdmBase;
import eu.etaxonomy.cdm.model.common.IDefinedTerm;
import eu.etaxonomy.cdm.model.common.ISimpleTerm;
import eu.etaxonomy.cdm.model.common.MarkerType;
import eu.etaxonomy.cdm.model.common.TermBase;
import eu.etaxonomy.cdm.model.description.FeatureTree;
+import eu.etaxonomy.cdm.model.metadata.CdmPreference;
+import eu.etaxonomy.cdm.model.metadata.CdmPreference.PrefKey;
+import eu.etaxonomy.cdm.model.metadata.PreferencePredicate;
+import eu.etaxonomy.cdm.model.metadata.PreferenceSubject;
import eu.etaxonomy.cdm.model.name.NomenclaturalCode;
import eu.etaxonomy.cdm.strategy.match.DefaultMatchStrategy;
import eu.etaxonomy.cdm.strategy.match.IMatchStrategy;
public static final String P2_REPOSITORIES_DELIM = ",";
public static final String P2_REPOSITORY_FIELDS_DELIM = ";";
+ private final static Logger logger = Logger.getLogger(PreferencesUtil.class);
+
+
+
/**
* <p>
* getPreferenceStore
* a {@link eu.etaxonomy.cdm.model.name.NomenclaturalCode}
* object.
*/
- public static void setPreferredNomenclaturalCode(
- NomenclaturalCode preferredCode) {
- getPreferenceStore().setValue(PREFERRED_NOMENCLATURAL_CODE_KEY,
- getPreferenceKey(preferredCode));
+ public static CdmPreference setPreferredNomenclaturalCode(
+ String preferenceKey, boolean local) {
+ if (local){
+ getPreferenceStore().setValue(PREFERRED_NOMENCLATURAL_CODE_KEY,
+ preferenceKey);
+ }
+ else{
+ ICdmRepository controller;
+ controller = CdmStore.getCurrentApplicationConfiguration();
+ if (controller == null){
+ return null;
+ }
+ PrefKey key = null;
+ try{
+ key = CdmPreference.NewKey(PreferenceSubject.NewDatabaseInstance(), PreferencePredicate.NomenclaturalCode);
+ }catch (Exception e){
+ System.out.println(e.getStackTrace());
+ }
+ CdmPreference preference = null;
+
+ if (preferenceKey == null){
+ preference = controller.getPreferenceService().find(key);
+ if (preference == null){
+ return null;
+ } else{
+// int index = StringUtils.lastIndexOf(preference.getValue(), ".");
+// UUID uuid = UUID.fromString(preference.getValue().substring(index +1, preference.getValue().length()));
+// preferredCode = NomenclaturalCode.getByUuid(uuid);
+
+ getPreferenceStore().setValue(PREFERRED_NOMENCLATURAL_CODE_KEY,
+ preferenceKey);
+ getPreferenceStore().setValue(ALLOW_OVERRIDE_NOMENCLATURAL_CODE_KEY,preference.isAllowOverride());
+ return preference;
+ }
+ } else{
+ preference = CdmPreference.NewInstance(PreferenceSubject.NewDatabaseInstance(), PreferencePredicate.NomenclaturalCode, preferenceKey);
+ controller.getPreferenceService().set(preference);
+
+ }
+ }
+ return null;
+
+
+
+ }
+
+ public static NomenclaturalCode getPreferredNomenclaturalCode(){
+ if (getPreferenceStore().getBoolean(OVERRIDE_NOMENCLATURAL_CODE_KEY)) {
+ return getPreferredNomenclaturalCode(true);
+ } else{
+ return getPreferredNomenclaturalCode(false);
+ }
}
/**
*
* @return a {@link eu.etaxonomy.cdm.model.name.NomenclaturalCode} object.
*/
- public static NomenclaturalCode getPreferredNomenclaturalCode() {
+ public static NomenclaturalCode getPreferredNomenclaturalCode(boolean useLocal) {
- for (NomenclaturalCode code : NomenclaturalCodeHelper.getAllCodes()) {
- String preferredCode = getPreferenceStore().getString(
- PREFERRED_NOMENCLATURAL_CODE_KEY);
- if (getPreferenceKey(code).equals(preferredCode)) {
- return code;
- }
+ CdmPreference pref = null;
+ if (!useLocal){
+ pref = getPreferenceFromDB(PreferencePredicate.NomenclaturalCode);
}
- return null;
+
+ String preferredCode;
+ if(pref == null){
+ preferredCode = getPreferenceStore().getString(
+ PREFERRED_NOMENCLATURAL_CODE_KEY);
+
+ }else{
+ preferredCode = pref.getValue();
+ }
+
+ return getPreferredNomenclaturalCode(preferredCode);
+
}
+ /**
+ * <p>
+ * getPreferredNomenclaturalCode
+ * </p>
+ *
+ * @return a {@link eu.etaxonomy.cdm.model.name.NomenclaturalCode} object.
+ */
+ public static NomenclaturalCode getPreferredNomenclaturalCode(String preferenceKeyNomenclaturalCode) {
+
+ for (NomenclaturalCode code : NomenclaturalCodeHelper.getAllCodes()) {
+ if (getPreferenceKey(code).equals(preferenceKeyNomenclaturalCode)) {
+ return code;
+ }
+ }
+ return null;
+ }
+
+ public static boolean isShowTaxonAssociations(){
+ if (getPreferenceStore().getBoolean(OVERRIDE_SPECIMEN_PREF) && getPreferenceStore().getBoolean(ALLOW_OVERRIDE_SPECIMEN_PREF)) {
+ return getPreferenceStore().getBoolean(SHOW_TAXON_ASSOCIATIONS);
+ } else{
+ CdmPreference pref = getPreferenceFromDB(PreferencePredicate.ShowTaxonAssociations);
+
+ return pref!=null?Boolean.valueOf(pref.getValue()):false;
+ }
+ }
+
+ public static boolean isShowLifeForm(){
+ if (getPreferenceStore().getBoolean(OVERRIDE_SPECIMEN_PREF) && getPreferenceStore().getBoolean(ALLOW_OVERRIDE_SPECIMEN_PREF)) {
+ return getPreferenceStore().getBoolean(SHOW_LIFE_FORM);
+ } else{
+ CdmPreference pref = getPreferenceFromDB(PreferencePredicate.ShowLifeForm);
+
+ return pref!=null?Boolean.valueOf(pref.getValue()):false;
+ }
+ }
+
+ public static boolean isDeterminationOnlyForFieldUnits(){
+ if (getPreferenceStore().getBoolean(OVERRIDE_SPECIMEN_PREF) && getPreferenceStore().getBoolean(ALLOW_OVERRIDE_SPECIMEN_PREF)) {
+ return getPreferenceStore().getBoolean(DETERMINATION_ONLY_FOR_FIELD_UNITS);
+ } else{
+ CdmPreference pref = getPreferenceFromDB(PreferencePredicate.DeterminationOnlyForFieldUnits);
+
+ return pref!=null?Boolean.valueOf(pref.getValue()):false;
+ }
+ }
+
+ public static boolean isCollectingAreaInGeneralSection(){
+ if (getPreferenceStore().getBoolean(OVERRIDE_SPECIMEN_PREF) && getPreferenceStore().getBoolean(ALLOW_OVERRIDE_SPECIMEN_PREF)) {
+ return getPreferenceStore().getBoolean(SHOW_COLLECTING_AREAS_IN_GENERAL_SECTION);
+ } else{
+ CdmPreference pref = getPreferenceFromDB(PreferencePredicate.ShowCollectingAreasInGeneralSection);
+
+ return pref!=null?Boolean.valueOf(pref.getValue()):false;
+ }
+ }
+
+ public static boolean isShowSimpleDetailsView(){
+ if (getPreferenceStore().getBoolean(OVERRIDE_NAME_DETAILS) && getPreferenceStore().getBoolean(ALLOW_OVERRIDE_NAME_DETAILS)) {
+ return getPreferenceStore().getBoolean(SHOW_SIMPLE_NAME_DETAILS_SECTION);
+ } else{
+ CdmPreference pref = getPreferenceFromDB(PreferencePredicate.NameDetailsView);
+
+ return pref!=null?Boolean.valueOf(pref.getValue()):false;
+ }
+ }
+
+
+
+ public static CdmPreference getPreferenceFromDB(PreferencePredicate predicate){
+ ICdmRepository controller;
+ CdmPreference pref = null;
+
+ try{
+ if(CdmStore.isActive()){
+ controller = CdmStore.getCurrentApplicationConfiguration();
+ PrefKey key = CdmPreference.NewKey(PreferenceSubject.NewDatabaseInstance(), predicate);
+ pref = controller.getPreferenceService().find(key);
+ }
+ }catch(Exception e){
+ e.printStackTrace();
+ }
+
+ return pref;
+
+ }
+
+ public static void setPreferenceToDB(CdmPreference preference){
+ ICdmRepository controller;
+ try{
+ if(CdmStore.isActive()){
+ controller = CdmStore.getCurrentApplicationConfiguration();
+ controller.getPreferenceService().set(preference);
+ }
+ }catch(Exception e){
+ e.printStackTrace();
+ }
+
+ }
+
+
+
public static String getPreferredDefaultLangugae(){
String preferredLanguage = getPreferenceStore().getString(DEFAULT_LANGUAGE_EDITOR);
if(StringUtils.isNotEmpty(preferredLanguage) && StringUtils.isNotBlank(preferredLanguage)){
return null;
}
+ public static boolean isShowMediaPreview(){
+ boolean isShowMediaPreview = getPreferenceStore().getBoolean(SHOW_MEDIA_PREVIEW);
+ return isShowMediaPreview;
+ }
+
/**
* Get the match strategy for the given class that was stored in preferences
* or the default strategy if it was not stored in preferences
* @return
*/
private static String getPreferenceKey(ICdmBase cdmBase) {
- cdmBase = (ICdmBase) HibernateProxyHelper.deproxy(cdmBase);
+ cdmBase = HibernateProxyHelper.deproxy(cdmBase);
String key = cdmBase.getClass().getName().concat(".")
.concat(cdmBase.getUuid().toString());
* @return
*/
public static String getPreferenceKey(ISimpleTerm simpleTerm) {
- simpleTerm = (ISimpleTerm) HibernateProxyHelper.deproxy(simpleTerm);
+ simpleTerm = HibernateProxyHelper.deproxy(simpleTerm);
String key = simpleTerm.getClass().getName().concat(".")
.concat(simpleTerm.getUuid().toString());
if (key.contains("javassist")) {
* @return
*/
public static String getPreferenceKey(IDefinedTerm definedTerm) {
- definedTerm = (IDefinedTerm) HibernateProxyHelper.deproxy(definedTerm);
+ definedTerm = HibernateProxyHelper.deproxy(definedTerm);
String key = definedTerm.getClass().getName().concat(".")
.concat(definedTerm.getUuid().toString());
if (key.contains("javassist")) {
TAXON_SERVICE_CONFIGURATOR_NAMES));
configurator.setDoTaxaByCommonNames(getPreferenceStore().getBoolean(
TAXON_SERVICE_CONFIGURATOR_COMMON_NAMES));
+ //configurator.setMatchMode(eu.etaxonomy.cdm.persistence.query.MatchMode.valueOf(getPreferenceStore().getString(TAXON_SERVICE_CONFIGURATOR_MATCH_MODE)));
return configurator;
}
* object.
*/
public static IFindTaxaAndNamesConfigurator initializeSearchConfigurator() {
- IFindTaxaAndNamesConfigurator configurator = new FindTaxaAndNamesConfiguratorImpl();
+ IFindTaxaAndNamesConfigurator configurator = FindTaxaAndNamesConfiguratorImpl.NewInstance();
configurator.setDoTaxa(true);
configurator.setDoSynonyms(true);
"name", "name.$", "relationsFromThisTaxon.$"));
configurator.setSynonymPropertyPath(Arrays.asList("$", "titleCache",
- "name", "name.$", "synonymRelations.relatedTo.*"));
+ "name", "name.$", "synonyms.relatedTo.*"));
// DEFAULT VALUES
// match mode is a simple like, actually all other match modes are kind
"http://www.biodiversitylibrary.org/openurl");
getPreferenceStore().setDefault(OPENURL_IMAGE_MAX_WIDTH, "1000");
getPreferenceStore().setDefault(OPENURL_IMAGE_MAX_HEIGHT, "1000");
- getPreferenceStore().setDefault(IPreferenceKeys.DISTRIBUTION_AREA_PREFRENCES_ACTIVE, false);
+ //Distribution Editor:
+ getPreferenceStore().setDefault(DISTRIBUTION_AREA_PREFRENCES_ACTIVE, false);
+ getPreferenceStore().setDefault(CHECKLIST_ID_IN_VOCABULARY, true);
+ getPreferenceStore().setDefault(CHECKLIST_SYMBOL, false);
+
+
+ //Name Details
+ getPreferenceStore().setDefault(SHOW_NAME_DETAILS_SECTION_ATOMISED_EPITHETS, true);
+ getPreferenceStore().setDefault(SHOW_NAME_DETAILS_SECTION_AUTHORSHIP_CACHE, true);
+ getPreferenceStore().setDefault(SHOW_NAME_DETAILS_SECTION_AUTHORSHIP, true);
+ getPreferenceStore().setDefault(SHOW_NAME_DETAILS_SECTION_HYBRID, true);
+ getPreferenceStore().setDefault(SHOW_NAME_DETAILS_SECTION_LSID, true);
+ getPreferenceStore().setDefault(SHOW_NAME_DETAILS_SECTION_NAME_RELATIONSHIP, true);
+ getPreferenceStore().setDefault(SHOW_NAME_DETAILS_SECTION_NAMECACHE, true);
+ getPreferenceStore().setDefault(SHOW_NAME_DETAILS_SECTION_NOMENCLATURAL_CODE, true);
+ getPreferenceStore().setDefault(SHOW_NAME_DETAILS_SECTION_NOMENCLATURAL_REFERENCE, true);
+ getPreferenceStore().setDefault(SHOW_NAME_DETAILS_SECTION_NOMENCLATURAL_STATUS, true);
+ getPreferenceStore().setDefault(SHOW_NAME_DETAILS_SECTION_PROTOLOGUE, true);
+ getPreferenceStore().setDefault(SHOW_NAME_DETAILS_SECTION_RANK, true);
+ getPreferenceStore().setDefault(SHOW_NAME_DETAILS_SECTION_TYPE_DESIGNATION, true);
+ //Navigator preferences
+ getPreferenceStore().setDefault(SORT_NODES_NATURALLY, false);
+ getPreferenceStore().setDefault(SORT_NODES_ALPHABETICALLY, false);
+ getPreferenceStore().setDefault(SORT_TAXA_BY_RANK_AND_NAME, true);
+ //override db preferences
+ getPreferenceStore().setDefault(ABCD_IMPORT_OVERRIDE, false);
+ getPreferenceStore().setDefault(OVERRIDE_SPECIMEN_PREF, false);
+ getPreferenceStore().setDefault(OVERRIDE_NAME_DETAILS, false);
+ getPreferenceStore().setDefault(DISTRIBUTION_AREA_PREFRENCES_ACTIVE_OVERRIDE, false);
+
+
}
/**
*/
public static void checkNomenclaturalCode() {
// First time Editor is opened, no nomenclatural code has been set
+ if (PreferencesUtil.getPreferredNomenclaturalCode(true) == null) {
+ PreferencesUtil.setPreferredNomenclaturalCode(getPreferenceKey(NomenclaturalCode.ICNAFP), true);
+ }
- if (PreferencesUtil.getPreferredNomenclaturalCode() == null) {
- PreferencesUtil.setPreferredNomenclaturalCode(NomenclaturalCode.ICNAFP);
- /*
- StoreUtil.info("No nomencatural code set.");
+ }
+ public static void setNomenclaturalCodePreferences(){
+ ICdmRepository controller;
+ controller = CdmStore.getCurrentApplicationConfiguration();
+ PrefKey key = CdmPreference.NewKey(PreferenceSubject.NewDatabaseInstance(), PreferencePredicate.NomenclaturalCode);
+ CdmPreference preference = null;
+ if (controller == null){
+ return ;
+ }
+ preference = controller.getPreferenceService().find(key);
+ if (preference == null){
+ return;
+ }
+ getPreferenceStore().setValue(ALLOW_OVERRIDE_NOMENCLATURAL_CODE_KEY, preference.isAllowOverride());
- Shell shell = StoreUtil.getShell();
+ int index = StringUtils.lastIndexOf(preference.getValue(), ".");
+ UUID uuid = UUID.fromString(preference.getValue().substring(index +1, preference.getValue().length()));
+ NomenclaturalCode preferredCode = NomenclaturalCode.getByUuid(uuid);
- Query user re: preferred nom. code
- Dialog dialog = new InitNomenclaturalCodePrefDialog(shell);
- dialog.open();
+ getPreferenceStore().setValue(PREFERRED_NOMENCLATURAL_CODE_KEY,
+ getPreferenceKey(preferredCode));
- // Short message confirming user's choice
- NomenclaturalCode code = PreferencesUtil
- .getPreferredNomenclaturalCode();
- MessageDialog
- .openInformation(
- shell,
- "Nomenclatural code set",
- "The following has been set as your preferred nomenclatural code:\n\n\t"
- + NomenclaturalCodeHelper
- .getDescription(code)
- + "\n\nYou can change the nomenclatural code at any time in the \"Preferences\" menu.");*/
- }
}
public static void checkDefaultLanguage(){
private static String getMarkerTypeEditingPreferenceKey(
MarkerType markerType) {
- markerType = (MarkerType) HibernateProxyHelper.deproxy(markerType);
+ markerType = HibernateProxyHelper.deproxy(markerType);
return markerType.getClass().getName() + EDIT_MARKER_TYPE_PREFIX;
}
ctrl.setEnabled(enabled);
}
}
-
+
/**
* <p>
* getSortRanksNaturally
* </p>
- *
- * @return a boolean.
+ *
+ * @return a boolean.
*/
public static boolean getSortNodesNaturally() {
return getPreferenceStore().getBoolean(SORT_NODES_NATURALLY);
}
-
+
/**
* <p>
* setSortRanksNaturally
public static void setSortNodesNaturally(boolean selection) {
getPreferenceStore().setValue(SORT_NODES_NATURALLY, selection);
}
+
+
+ /**
+ * <p>
+ * getSortRanksNaturally
+ * </p>
+ *
+ * @return a boolean.
+ */
+ public static boolean getSortNodesStrictlyAlphabetically() {
+ return getPreferenceStore().getBoolean(SORT_NODES_ALPHABETICALLY);
+ }
+
+ /**
+ * <p>
+ * setSortRanksNaturally
+ * </p>
+ *
+ * @param selection
+ * a boolean.
+ */
+ public static void setSortNodesStrictlyAlphabetically(boolean selection) {
+ getPreferenceStore().setValue(SORT_NODES_ALPHABETICALLY, selection);
+ }
+
+ /**
+ * <p>
+ * setStoreNavigatorState
+ * </p>
+ *
+ * @param selection
+ * a boolean.
+ */
+ public static boolean isStoreNavigatorState() {
+ return getPreferenceStore().getBoolean(RESTORE_NAVIGATOR_STATE);
+
+ }
+
+ /**
+ * <p>
+ * setStoreNavigatorState
+ * </p>
+ *
+ * @param selection
+ * a boolean.
+ */
+ public static void setStoreNavigatorState(boolean selection) {
+ getPreferenceStore().setValue(RESTORE_NAVIGATOR_STATE, selection);
+
+ }
+
+ /**
+ * @return
+ */
+ public static boolean isShowUpWidgetIsDisposedMessages() {
+ return getPreferenceStore().getBoolean(IS_SHOW_UP_WIDGET_IS_DISPOSED);
+ }
+ public static void setShowUpWidgetIsDisposedMessages(boolean selection) {
+ getPreferenceStore().setValue(IS_SHOW_UP_WIDGET_IS_DISPOSED, selection);
+ }
+
+ /**
+ * @return
+ */
+ public static boolean isShowIdInVocabularyInChecklistEditor() {
+ return getPreferenceStore().getBoolean(IPreferenceKeys.CHECKLIST_ID_IN_VOCABULARY);
+ }
+ public static void setShowIdInVocabularyInChecklistEditor(boolean selection) {
+ getPreferenceStore().setValue(CHECKLIST_ID_IN_VOCABULARY, selection);
+ }
+
+ /**
+ * @return
+ */
+ public static boolean isShowSymbolInChecklistEditor() {
+ return getPreferenceStore().getBoolean(IPreferenceKeys.CHECKLIST_SYMBOL);
+ }
+ public static void setShowSymbolInChecklistEditor(boolean selection) {
+ getPreferenceStore().setValue(CHECKLIST_SYMBOL, selection);
+ }
+
+ /**
+ * @return
+ */
+ public static boolean isShowRankInChecklistEditor() {
+ return getPreferenceStore().getBoolean(IPreferenceKeys.CHECKLIST_SHOW_RANK);
+ }
+ public static void setShowRankInChecklistEditor(boolean selection) {
+ getPreferenceStore().setValue(CHECKLIST_SHOW_RANK, selection);
+ }
+
+ /**
+ * @param object
+ * @param b
+ * @return
+ */
+ public static NameDetailsConfigurator getPreferredNameDetailsConfiguration( boolean local) {
+ NameDetailsConfigurator config = new NameDetailsConfigurator(true);
+
+ CdmPreference preference = null;
+
+ if (!local) {
+ preference = getPreferenceFromDB(PreferencePredicate.NameDetailsView);
+ if (preference == null){
+ return null;
+ }
+
+ getPreferenceStore().setValue(ALLOW_OVERRIDE_NAME_DETAILS, preference.isAllowOverride());
+
+ //the preference value is build like this:
+ //<section1>:true;<section2>:false....
+
+ String value = preference.getValue();
+ String [] sections = value.split(";");
+ Map<String, Boolean> sectionMap = new HashMap<String, Boolean>();
+ String[] sectionValues;
+ for (String sectionValue: sections){
+ sectionValues = sectionValue.split(":");
+ sectionMap.put(sectionValues[0], Boolean.valueOf(sectionValues[1]));
+ }
+ config.setAllowOverride(preference.isAllowOverride());
+ config.setSimpleDetailsViewActivated(getValue(sectionMap, "simpleViewActivated"));
+
+ // getPreferenceStore().setValue(SHOW_SIMPLE_NAME_DETAILS_TAXON,
+ // (getValue(sectionMap, "taxon")));
+ config.setTaxonSectionActivated(getValue(sectionMap, "taxon"));
+
+ // getPreferenceStore().setValue(SHOW_NAME_DETAILS_SECTION_LSID,
+ // (getValue(sectionMap, "lsid")));
+ config.setLSIDActivated(getValue(sectionMap, "lsid"));
+
+ // getPreferenceStore().setValue(SHOW_NAME_DETAILS_SECTION_NOMENCLATURAL_CODE,
+ // (getValue(sectionMap, "nc")));
+ config.setNomenclaturalCodeActived(getValue(sectionMap, "nc"));
+
+ // getPreferenceStore().setValue(SHOW_NAME_DETAILS_SECTION_APPENDED_PHRASE,
+ // (getValue(sectionMap, "ap")));
+ config.setAppendedPhraseActivated(getValue(sectionMap, "ap"));
+
+ // getPreferenceStore().setValue(SHOW_NAME_DETAILS_SECTION_RANK,
+ // (getValue(sectionMap, "rank")));
+ config.setRankActivated(getValue(sectionMap, "rank"));
+
+
+ // getPreferenceStore().setValue(SHOW_NAME_DETAILS_SECTION_ATOMISED_EPITHETS,
+ // (getValue(sectionMap, "atomisedEpithets")));
+ config.setAtomisedEpithetsActivated(getValue(sectionMap, "atomisedEpithets"));
+
+ // getPreferenceStore().setValue(SHOW_NAME_DETAILS_SECTION_AUTHORSHIP,
+ // (getValue(sectionMap,"author")));
+ config.setAuthorshipSectionActivated(getValue(sectionMap,"author"));
+
+ // getPreferenceStore().setValue(SHOW_NAME_DETAILS_SECTION_NOMENCLATURAL_REFERENCE,
+ // (getValue(sectionMap, "nomRef")));
+ config.setNomenclaturalReferenceSectionActivated(sectionMap.get("nomRef"));
+
+ // getPreferenceStore().setValue(SHOW_NAME_DETAILS_SECTION_NOMENCLATURAL_STATUS,
+ // (getValue(sectionMap, "nomStat")));
+ config.setNomenclaturalStatusSectionActivated(getValue(sectionMap, "nomStat"));
+
+
+ // getPreferenceStore().setValue(SHOW_NAME_DETAILS_SECTION_PROTOLOGUE,
+ // (getValue(sectionMap,"protologue")));
+ config.setProtologueActivated(getValue(sectionMap,"protologue"));
+
+ // getPreferenceStore().setValue(SHOW_NAME_DETAILS_SECTION_TYPE_DESIGNATION,
+ // (getValue(sectionMap,"typeDes")));
+ config.setTypeDesignationSectionActivated(getValue(sectionMap,"typeDes"));
+
+ // getPreferenceStore().setValue(SHOW_NAME_DETAILS_SECTION_NAME_RELATIONSHIP,
+ // (getValue(sectionMap,"nameRelation")));
+ config.setNameRelationsSectionActivated(getValue(sectionMap,"nameRelation"));
+
+ // getPreferenceStore().setValue(SHOW_NAME_DETAILS_SECTION_HYBRID,
+ // (getValue(sectionMap, "hybrid")));
+ config.setHybridActivated(getValue(sectionMap,"hybrid"));
+ }else{
+ config.setSimpleDetailsViewActivated(getPreferenceStore().getBoolean(SHOW_SIMPLE_NAME_DETAILS_SECTION));
+ config.setTaxonSectionActivated(getPreferenceStore().getBoolean(SHOW_SIMPLE_NAME_DETAILS_TAXON));
+ config.setLSIDActivated(getPreferenceStore().getBoolean(SHOW_NAME_DETAILS_SECTION_LSID));
+ config.setNomenclaturalCodeActived(getPreferenceStore().getBoolean(SHOW_NAME_DETAILS_SECTION_NOMENCLATURAL_CODE));
+ config.setAppendedPhraseActivated(getPreferenceStore().getBoolean(SHOW_NAME_DETAILS_SECTION_APPENDED_PHRASE));
+ config.setRankActivated(getPreferenceStore().getBoolean(SHOW_NAME_DETAILS_SECTION_RANK));
+ config.setAtomisedEpithetsActivated(getPreferenceStore().getBoolean(SHOW_NAME_DETAILS_SECTION_ATOMISED_EPITHETS));
+ config.setAuthorshipSectionActivated(getPreferenceStore().getBoolean(SHOW_NAME_DETAILS_SECTION_AUTHORSHIP));
+ config.setNomenclaturalReferenceSectionActivated(getPreferenceStore().getBoolean(SHOW_NAME_DETAILS_SECTION_NOMENCLATURAL_REFERENCE));
+ config.setNomenclaturalStatusSectionActivated(getPreferenceStore().getBoolean(SHOW_NAME_DETAILS_SECTION_NOMENCLATURAL_STATUS));
+ config.setProtologueActivated(getPreferenceStore().getBoolean(SHOW_NAME_DETAILS_SECTION_PROTOLOGUE));
+ config.setTypeDesignationSectionActivated(getPreferenceStore().getBoolean(SHOW_NAME_DETAILS_SECTION_TYPE_DESIGNATION));
+ config.setNameRelationsSectionActivated(getPreferenceStore().getBoolean(SHOW_NAME_DETAILS_SECTION_NAME_RELATIONSHIP));
+ config.setHybridActivated(getPreferenceStore().getBoolean(SHOW_NAME_DETAILS_SECTION_HYBRID));
+ }
+ return config;
+ }
+
+ /**
+ * @param object
+ * @param b
+ * @return
+ */
+ public static void setPreferredNameDetailsConfiguration(NameDetailsConfigurator config, boolean local) {
+ CdmPreference preference = null;
+
+ if (!local) {
+ preference = CdmPreference.NewInstance(PreferenceSubject.NewDatabaseInstance(), PreferencePredicate.NameDetailsView, config.toString());
+
+ setPreferenceToDB(preference);
+ }
+ //also add to local preferences
+ getPreferenceStore().setValue(SHOW_SIMPLE_NAME_DETAILS_SECTION, config.isSimpleDetailsViewActivated());
+ getPreferenceStore().setValue(SHOW_SIMPLE_NAME_DETAILS_TAXON, config.isTaxonSectionActivated());
+ getPreferenceStore().setValue(SHOW_NAME_DETAILS_SECTION_LSID, config.isLSIDActivated());
+ getPreferenceStore().setValue(SHOW_NAME_DETAILS_SECTION_NOMENCLATURAL_CODE, config.isNomenclaturalCodeActived());
+ getPreferenceStore().setValue(SHOW_NAME_DETAILS_SECTION_APPENDED_PHRASE, config.isAppendedPhraseActivated());
+ getPreferenceStore().setValue(SHOW_NAME_DETAILS_SECTION_RANK, config.isRankActivated());
+ getPreferenceStore().setValue(SHOW_NAME_DETAILS_SECTION_ATOMISED_EPITHETS, config.isAtomisedEpithetsActivated());
+ getPreferenceStore().setValue(SHOW_NAME_DETAILS_SECTION_AUTHORSHIP, config.isAuthorshipSectionActivated());
+ getPreferenceStore().setValue(SHOW_NAME_DETAILS_SECTION_NOMENCLATURAL_REFERENCE, config.isNomenclaturalReferenceSectionActivated());
+ getPreferenceStore().setValue(SHOW_NAME_DETAILS_SECTION_NOMENCLATURAL_STATUS, config.isNomenclaturalStatusSectionActivated());
+ getPreferenceStore().setValue(SHOW_NAME_DETAILS_SECTION_PROTOLOGUE, config.isProtologueActivated());
+ getPreferenceStore().setValue(SHOW_NAME_DETAILS_SECTION_TYPE_DESIGNATION, config.isTypeDesignationSectionActivated());
+ getPreferenceStore().setValue(SHOW_NAME_DETAILS_SECTION_NAME_RELATIONSHIP, config.isNameRelationsSectionActivated());
+ getPreferenceStore().setValue(SHOW_NAME_DETAILS_SECTION_HYBRID, config.isHybridActivated());
+
+ }
+
+ private static Boolean getValue(Map<String, Boolean> sectionMap, String string) {
+ if (sectionMap.containsKey(string)){
+ return sectionMap.get(string);
+ }else{
+ return true;
+ }
+
+ }
+
+
+
+ /**
+ * <p>
+ * setAbcdConfigurator
+ * </p>
+ *
+ * @param preferredConfiguration
+ * a {@link eu.etaxonomy.cdm.io.specimen.abcd206.in.Abcd206ImportConfigurator}
+ * object.
+ */
+ public static Abcd206ImportConfigurator getAbcdImportConfigurationPreference() {
+
+ Abcd206ImportConfigurator config = Abcd206ImportConfigurator.NewInstance(null,null);
+ ICdmRepository controller;
+ controller = CdmStore.getCurrentApplicationConfiguration();
+ PrefKey key = CdmPreference.NewKey(PreferenceSubject.NewDatabaseInstance(), PreferencePredicate.AbcdImportConfig);
+ CdmPreference preference = null;
+ if (controller == null){
+ return null;
+ }
+ preference = controller.getPreferenceService().find(key);
+ boolean allowOverride = true;
+ if (preference != null && !preference.isAllowOverride()){
+ allowOverride = false;
+ }
+ if (PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.ABCD_IMPORT_OVERRIDE) && allowOverride){
+
+ config.setAddIndividualsAssociationsSuchAsSpecimenAndObservations(PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_ADD_INDIVIDUALS_ASSOCIATIONS_SUCH_AS_SPECIMEN_AND_OBSERVATIONS));
+
+ config.setAddMediaAsMediaSpecimen(PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_ADD_MEDIA_AS_MEDIASPECIMEN));
+
+ config.setAllowReuseOtherClassifications(PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_ALLOW_REUSE_OTHER_CLASSIFICATIONS));
+ config.setDeduplicateClassifications(PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_DEDUPLICATE_CLASSIFICATIONS));
+ config.setDeduplicateReferences(PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_DEDUPLICATE_REFERENCES));
+
+ config.setGetSiblings(PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_DO_SIBLINGS));
+ config.setIgnoreAuthorship(PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_IGNORE_AUTHORSHIP));
+ config.setIgnoreImportOfExistingSpecimen(PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_IGNORE_IMPORT_OF_EXISTING_SPECIMEN));
+ config.setMapUnitIdToAccessionNumber(PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_MAP_UNIT_ID_TO_ACCESSION_NUMBER));
+ config.setMapUnitIdToBarcode(PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_MAP_UNIT_ID_TO_BARCODE));
+ config.setMapUnitIdToCatalogNumber(PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_MAP_UNIT_ID_TOCATALOG_NUMBER));
+ config.setMoveNewTaxaToDefaultClassification(PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_MOVE_NEW_TAXA_TO_DEFAULT_CLASSIFICATION));
+ config.setOverwriteExistingSpecimens(PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_OVERWRITE_EXISTING_SPECIMEN));
+ config.setReuseExistingDescriptiveGroups(PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_REUSE_EXISTING_DESCRIPTIVE_GROUPS));
+ config.setReuseExistingMetaData(PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_REUSE_EXISTING_META_DATA));
+ config.setReuseExistingTaxaWhenPossible(PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_REUSE_EXISTING_TAXA_WHEN_POSSIBLE));
+ config.setNomenclaturalCode(NomenclaturalCode.getByKey(PreferencesUtil.getPreferenceStore().getString(IPreferenceKeys.ABCD_IMPORT_CONFIGURATOR_NOMENCLATURAL_CODE)));
+ return config;
+
+ }
+
+ if (preference == null){
+ return config;
+ } else{
+ String configString = preference.getValue();
+ String[] configArray = configString.split(";");
+
+ for (String configItem: configArray){
+ String[] keyValue = configItem.split(":");
+ String keyString = keyValue[0];
+ String valueString = keyValue[1];
+ if (keyString.equals("ignoreImportOfExistingSpecimen")){
+ config.setIgnoreImportOfExistingSpecimen(Boolean.valueOf(valueString));
+ }else if (keyString.equals("addIndividualsAssociationsSuchAsSpecimenAndObservations")){
+ config.setAddIndividualsAssociationsSuchAsSpecimenAndObservations(Boolean.valueOf(valueString));
+ }else if (keyString.equals("reuseExistingTaxaWhenPossible")){
+ config.setReuseExistingTaxaWhenPossible(Boolean.valueOf(valueString));
+ }else if (keyString.equals("ignoreAuthorship")){
+ config.setIgnoreAuthorship(Boolean.valueOf(valueString));
+ }else if (keyString.equals("addMediaAsMediaSpecimen")){
+ config.setAddMediaAsMediaSpecimen(Boolean.valueOf(valueString));
+ }else if (keyString.equals("reuseExistingMetaData")){
+ config.setReuseExistingMetaData(Boolean.valueOf(valueString));
+ }else if (keyString.equals("reuseExistingDescriptiveGroups")){
+ config.setReuseExistingDescriptiveGroups(Boolean.valueOf(valueString));
+ }else if (keyString.equals("allowReuseOtherClassifications")){
+ config.setAllowReuseOtherClassifications(Boolean.valueOf(valueString));
+ }else if (keyString.equals("deduplicateReferences")){
+ config.setDeduplicateReferences(Boolean.valueOf(valueString));
+ }else if (keyString.equals("deduplicateClassifications")){
+ config.setDeduplicateClassifications(Boolean.valueOf(valueString));
+ }else if (keyString.equals("moveNewTaxaToDefaultClassification")){
+ config.setMoveNewTaxaToDefaultClassification(Boolean.valueOf(valueString));
+ }else if (keyString.equals("mapUnitIdToCatalogNumber")){
+ config.setMapUnitIdToCatalogNumber(Boolean.valueOf(valueString));
+ }else if (keyString.equals("mapUnitIdToAccessionNumber")){
+ config.setMapUnitIdToAccessionNumber(Boolean.valueOf(valueString));
+ }else if (keyString.equals("mapUnitIdToBarcode")){
+ config.setMapUnitIdToBarcode(Boolean.valueOf(valueString));
+ }else if (keyString.equals("overwriteExistingSpecimens")){
+ config.setOverwriteExistingSpecimens(Boolean.valueOf(valueString));
+ }else if (keyString.equals("nomenclaturalCode")){
+ config.setNomenclaturalCode(NomenclaturalCode.fromString(valueString));
+ }else{
+ logger.debug("This key of the abcd configurator needs to be added to the transformer: " + keyString);
+ }
+
+ }
+ }
+ return config;
+ }
+
+
+ public static void updateAbcdImportConfigurationPreference() {
+
+ Abcd206ImportConfigurator config = Abcd206ImportConfigurator.NewInstance(null,null);
+ ICdmRepository controller;
+ controller = CdmStore.getCurrentApplicationConfiguration();
+ PrefKey key = CdmPreference.NewKey(PreferenceSubject.NewDatabaseInstance(), PreferencePredicate.AbcdImportConfig);
+ CdmPreference preference = null;
+ if (controller == null){
+ return ;
+ }
+ preference = controller.getPreferenceService().find(key);
+ boolean allowOverride = true;
+ if (preference != null && !preference.isAllowOverride()){
+ allowOverride = false;
+ }
+ if (!PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.ABCD_IMPORT_OVERRIDE) || !allowOverride){
+
+ getPreferenceStore().setValue(ABCD_IMPORT_CONFIGURATOR_ADD_INDIVIDUALS_ASSOCIATIONS_SUCH_AS_SPECIMEN_AND_OBSERVATIONS, config.isAddIndividualsAssociationsSuchAsSpecimenAndObservations());
+ getPreferenceStore().setValue(ABCD_IMPORT_CONFIGURATOR_ADD_MEDIA_AS_MEDIASPECIMEN, config.isAddMediaAsMediaSpecimen());
+
+ getPreferenceStore().setValue(ABCD_IMPORT_CONFIGURATOR_ALLOW_REUSE_OTHER_CLASSIFICATIONS, config.isAllowReuseOtherClassifications());
+ getPreferenceStore().setValue(ABCD_IMPORT_CONFIGURATOR_DEDUPLICATE_CLASSIFICATIONS, config.isDeduplicateClassifications());
+ getPreferenceStore().setValue(ABCD_IMPORT_CONFIGURATOR_DEDUPLICATE_REFERENCES, config.isDeduplicateReferences());
+
+ getPreferenceStore().setValue(ABCD_IMPORT_CONFIGURATOR_DO_SIBLINGS, config.isGetSiblings());
+ getPreferenceStore().setValue(ABCD_IMPORT_CONFIGURATOR_IGNORE_AUTHORSHIP, config.isIgnoreAuthorship());
+ getPreferenceStore().setValue(ABCD_IMPORT_CONFIGURATOR_IGNORE_IMPORT_OF_EXISTING_SPECIMEN, config.isIgnoreImportOfExistingSpecimen());
+ getPreferenceStore().setValue(ABCD_IMPORT_CONFIGURATOR_MAP_UNIT_ID_TO_ACCESSION_NUMBER, config.isMapUnitIdToAccessionNumber());
+ getPreferenceStore().setValue(ABCD_IMPORT_CONFIGURATOR_MAP_UNIT_ID_TO_BARCODE, config.isMapUnitIdToBarcode());
+ getPreferenceStore().setValue(ABCD_IMPORT_CONFIGURATOR_MAP_UNIT_ID_TOCATALOG_NUMBER, config.isMapUnitIdToCatalogNumber());
+ getPreferenceStore().setValue(ABCD_IMPORT_CONFIGURATOR_MOVE_NEW_TAXA_TO_DEFAULT_CLASSIFICATION, config.isMoveNewTaxaToDefaultClassification());
+ getPreferenceStore().setValue(ABCD_IMPORT_CONFIGURATOR_OVERWRITE_EXISTING_SPECIMEN, config.isOverwriteExistingSpecimens());
+ getPreferenceStore().setValue(ABCD_IMPORT_CONFIGURATOR_REUSE_EXISTING_DESCRIPTIVE_GROUPS, config.isReuseExistingDescriptiveGroups());
+ getPreferenceStore().setValue(ABCD_IMPORT_CONFIGURATOR_REUSE_EXISTING_META_DATA, config.isReuseExistingMetaData());
+ getPreferenceStore().setValue(ABCD_IMPORT_CONFIGURATOR_REUSE_EXISTING_TAXA_WHEN_POSSIBLE, config.isReuseExistingTaxaWhenPossible());
+ if (config.getNomenclaturalCode() != null){
+ getPreferenceStore().setValue(ABCD_IMPORT_CONFIGURATOR_NOMENCLATURAL_CODE, config.getNomenclaturalCode().getKey());
+ }
+
+
+ }
+ }
+
+
+ /**
+ *
+ */
+ public NameDetailsConfigurator createLocalNameDetailsViewConfig(boolean local) {
+ NameDetailsConfigurator config = new NameDetailsConfigurator(true);
+ if (local){
+ config.setSimpleDetailsViewActivated(getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_SIMPLE_NAME_DETAILS_SECTION));
+ config.setAppendedPhraseActivated(getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_NAME_DETAILS_SECTION_APPENDED_PHRASE));
+ config.setAtomisedEpithetsActivated(getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_NAME_DETAILS_SECTION_ATOMISED_EPITHETS));
+ config.setAuthorshipSectionActivated(getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_NAME_DETAILS_SECTION_AUTHORSHIP));
+ config.setLSIDActivated(getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_NAME_DETAILS_SECTION_LSID));
+ config.setNameApprobiationActivated(getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_NAME_DETAILS_SECTION_NAME_APPROBATION));
+ config.setNameCacheActivated(getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_NAME_DETAILS_SECTION_CACHE));
+ config.setNameRelationsSectionActivated(getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_NAME_DETAILS_SECTION_NAME_RELATIONSHIP));
+ config.setNomenclaturalCodeActived(getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_NAME_DETAILS_SECTION_NOMENCLATURAL_CODE));
+ config.setNomenclaturalStatusSectionActivated(getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_NAME_DETAILS_SECTION_NOMENCLATURAL_STATUS));
+ config.setNomenclaturalReferenceSectionActivated(getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_NAME_DETAILS_SECTION_NOMENCLATURAL_REFERENCE));
+ config.setProtologueActivated(getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_NAME_DETAILS_SECTION_PROTOLOGUE));
+ config.setRankActivated(getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_NAME_DETAILS_SECTION_RANK));
+ config.setTaxonSectionActivated(getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_SIMPLE_NAME_DETAILS_TAXON));
+ config.setTypeDesignationSectionActivated(getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_NAME_DETAILS_SECTION_TYPE_DESIGNATION));
+ config.setHybridActivated(getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_NAME_DETAILS_SECTION_HYBRID));
+ }else{
+
+ }
+
+ return config;
+ }
+
+
+ public static void saveConfigToPrefernceStore(NameDetailsConfigurator config) {
+ PreferencesUtil.getPreferenceStore().setValue(IPreferenceKeys.SHOW_SIMPLE_NAME_DETAILS_SECTION,
+ config.isSimpleDetailsViewActivated());
+ PreferencesUtil.getPreferenceStore().setValue(IPreferenceKeys.SHOW_SIMPLE_NAME_DETAILS_TAXON, config.isTaxonSectionActivated());
+ PreferencesUtil.getPreferenceStore().setValue(IPreferenceKeys.SHOW_NAME_DETAILS_SECTION_LSID, config.isLSIDActivated());
+ PreferencesUtil.getPreferenceStore().setValue(IPreferenceKeys.SHOW_NAME_DETAILS_SECTION_NOMENCLATURAL_CODE,
+ config.isNomenclaturalCodeActived());
+ PreferencesUtil.getPreferenceStore().setValue(IPreferenceKeys.SHOW_NAME_DETAILS_SECTION_NAMECACHE,
+ config.isNameCacheActivated());
+ PreferencesUtil.getPreferenceStore().setValue(IPreferenceKeys.SHOW_NAME_DETAILS_SECTION_APPENDED_PHRASE,
+ config.isAppendedPhraseActivated());
+ PreferencesUtil.getPreferenceStore().setValue(IPreferenceKeys.SHOW_NAME_DETAILS_SECTION_RANK, config.isRankActivated());
+ PreferencesUtil.getPreferenceStore().setValue(IPreferenceKeys.SHOW_NAME_DETAILS_SECTION_ATOMISED_EPITHETS,
+ config.isAtomisedEpithetsActivated());
+ PreferencesUtil.getPreferenceStore().setValue(IPreferenceKeys.SHOW_NAME_DETAILS_SECTION_AUTHORSHIP_CACHE,
+ config.isAuthorCacheActivated());
+ PreferencesUtil.getPreferenceStore().setValue(IPreferenceKeys.SHOW_NAME_DETAILS_SECTION_AUTHORSHIP,
+ config.isAuthorshipSectionActivated());
+ PreferencesUtil.getPreferenceStore().setValue(IPreferenceKeys.SHOW_NAME_DETAILS_SECTION_NOMENCLATURAL_REFERENCE,
+ config.isNomenclaturalReferenceSectionActivated());
+ PreferencesUtil.getPreferenceStore().setValue(IPreferenceKeys.SHOW_NAME_DETAILS_SECTION_NOMENCLATURAL_STATUS,
+ config.isNomenclaturalStatusSectionActivated());
+ PreferencesUtil.getPreferenceStore().setValue(IPreferenceKeys.SHOW_NAME_DETAILS_SECTION_PROTOLOGUE,
+ config.isProtologueActivated());
+ PreferencesUtil.getPreferenceStore().setValue(IPreferenceKeys.SHOW_NAME_DETAILS_SECTION_TYPE_DESIGNATION,
+ config.isTypeDesignationSectionActivated());
+ PreferencesUtil.getPreferenceStore().setValue(IPreferenceKeys.SHOW_NAME_DETAILS_SECTION_NAME_RELATIONSHIP,
+ config.isNameRelationsSectionActivated());
+ PreferencesUtil.getPreferenceStore().setValue(IPreferenceKeys.SHOW_NAME_DETAILS_SECTION_HYBRID,
+ config.isHybridActivated());
+
+ }
+
+/**
+ * @return
+ */
+public static boolean isSortTaxaByRankAndName() {
+
+ return getPreferenceStore().getBoolean(IPreferenceKeys.SORT_TAXA_BY_RANK_AND_NAME);
+}
+
+/**
+ * @return
+ */
+public static boolean isSortNamedAreaByOrderInVocabulary() {
+
+ return getPreferenceStore().getBoolean(IPreferenceKeys.SORT_NAMED_AREA_BY_VOCABULARY_ORDER);
+}
+
+public static void setSortNamedAreasByOrderInVocabulary(boolean isSortByVocabularyOrder) {
+ getPreferenceStore().setValue(IPreferenceKeys.SORT_NAMED_AREA_BY_VOCABULARY_ORDER, isSortByVocabularyOrder);
+
+}
+
+/**
+ * <p>
+ * setPreferredNamedAreasForDistributionEditor
+ * </p>
+ *
+ * @param saveCheckedElements
+ * @param saveGrayedElements
+ */
+public static void setLastSelectedReference(
+ List<String> lastSelectedReferences) {
+
+ IPreferenceStore preferenceStore = PreferencesUtil.getPreferenceStore();
+ preferenceStore.setValue(PreferencesUtil.LAST_SELECTED_REFERENCES, lastSelectedReferences.toString());
+ }
+
+/**
+ * <p>
+ * setPreferredNamedAreasForDistributionEditor
+ * </p>
+ *
+ * @param saveCheckedElements
+ * @param saveGrayedElements
+ */
+public static List<String> getLastSelectedReferences() {
+
+ IPreferenceStore preferenceStore = PreferencesUtil.getPreferenceStore();
+ String lastSelected = preferenceStore.getString(PreferencesUtil.LAST_SELECTED_REFERENCES);
+ List<String> result = new ArrayList<>();
+ if (!StringUtils.isBlank(lastSelected)){
+ Collections.addAll(result, lastSelected.substring(1,lastSelected.length()-1).split(", "));
+ }
+ return result;
+ }
+
+
+/**
+ * <p>
+ * setPreferredNamedAreasForDistributionEditor
+ * </p>
+ *
+ * @param saveCheckedElements
+ * @param saveGrayedElements
+ */
+public static void setPreferredNamedAreasForDistributionEditor(
+ String saveCheckedElements, String saveGrayedElements, boolean local) {
+ if (local){
+ IPreferenceStore preferenceStore = PreferencesUtil.getPreferenceStore();
+ preferenceStore.setValue(PreferencesUtil.DISTRIBUTION_AREA_OCCURENCE_STATUS, saveCheckedElements);
+ preferenceStore.setValue(PreferencesUtil.DISTRIBUTION_AREA_OCCURENCE_STATUS_GRAYED, saveGrayedElements);
+
+ }
+ else{
+// ICdmRepository controller;
+
+// PrefKey key = CdmPreference.NewKey(PreferenceSubject.NewDatabaseInstance(), PreferencePredicate.AvailableDistributionAreaTerms);
+ CdmPreference preference = null;
+
+ if (saveCheckedElements == null){
+ preference = getPreferenceFromDB(PreferencePredicate.AvailableDistributionAreaTerms);
+
+ if (preference == null){
+ return ;
+ } else{
+ getPreferenceStore().setValue(DISTRIBUTION_AREA_OCCURENCE_STATUS,
+ saveCheckedElements);
+ preference = CdmPreference.NewInstance(PreferenceSubject.NewDatabaseInstance(), PreferencePredicate.AvailableDistributionAreaTerms, saveCheckedElements);
+ setPreferenceToDB(preference);
+
+ }
+ } else{
+ preference = CdmPreference.NewInstance(PreferenceSubject.NewDatabaseInstance(), PreferencePredicate.AvailableDistributionAreaTerms, saveCheckedElements);
+ setPreferenceToDB(preference);
+ getPreferenceStore().setValue(DISTRIBUTION_AREA_OCCURENCE_STATUS,
+ saveCheckedElements);
+
+ }
+ }
+
+}
+
+/**
+ * @param saveCheckedElements
+ * @param saveCheckedElements2
+ * @param b
+ */
+public static void setPreferredVocabulariesForDistributionEditor(String saveCheckedElements,
+ boolean local) {
+ if (local){
+ IPreferenceStore preferenceStore = PreferencesUtil.getPreferenceStore();
+ preferenceStore.setValue(PreferencesUtil.DISTRIBUTION_VOCABULARIES, saveCheckedElements);
+
+
+ }
+ else{
+ ICdmRepository controller;
+ CdmPreference preference = null;
+
+ if (saveCheckedElements == null){
+ preference = getPreferenceFromDB(PreferencePredicate.AvailableDistributionAreaVocabularies);
+
+ if (preference == null){
+ return ;
+ } else{
+ getPreferenceStore().setValue(DISTRIBUTION_VOCABULARIES,
+ saveCheckedElements);
+ preference = CdmPreference.NewInstance(PreferenceSubject.NewDatabaseInstance(), PreferencePredicate.AvailableDistributionAreaVocabularies, saveCheckedElements);
+ setPreferenceToDB(preference);
+
+
+ }
+ } else{
+ preference = CdmPreference.NewInstance(PreferenceSubject.NewDatabaseInstance(), PreferencePredicate.AvailableDistributionAreaVocabularies, saveCheckedElements);
+ setPreferenceToDB(preference);
+ getPreferenceStore().setValue(DISTRIBUTION_AREA_OCCURENCE_STATUS,
+ saveCheckedElements);
+
+ }
+ }
+
+
+
+}
+
+/**
+ * @param saveCheckedElements
+ * @param saveCheckedElements2
+ * @param b
+ */
+public static String getPreferredVocabulariesForDistributionEditor(boolean local) {
+ if (local){
+ IPreferenceStore preferenceStore = PreferencesUtil.getPreferenceStore();
+ String pref = preferenceStore.getString(DISTRIBUTION_VOCABULARIES);
+ return pref;
+
+ }
+ else{
+
+ CdmPreference preference = null;
+
+ preference = getPreferenceFromDB(PreferencePredicate.AvailableDistributionAreaVocabularies);
+
+ if (preference == null){
+ return null;
+ } else{
+ return preference.getValue();
+ }
+
+ }
+
+
+
+}
+
+/**
+ *
+ */
+public static void updateDBPreferences() {
+ CdmPreference preference = null;
+ IPreferenceStore prefStore = getPreferenceStore();
+
+ //ABCD Configurator
+
+ updateAbcdImportConfigurationPreference();
+
+ //Specimen Details
+ preference = getPreferenceFromDB(PreferencePredicate.ShowTaxonAssociations);
+ if (preference != null){
+ if(!prefStore.getBoolean(SHOW_TAXON_ASSOCIATIONS_OVERRIDE) || !preference.isAllowOverride()){
+ prefStore.setValue(SHOW_TAXON_ASSOCIATIONS, preference.getValue());
+ }
+ }
+ preference = getPreferenceFromDB(PreferencePredicate.ShowCollectingAreasInGeneralSection);
+ if (preference != null){
+ if(!prefStore.getBoolean(SHOW_COLLECTING_AREAS_IN_GENERAL_SECTION_OVERRIDE) || !preference.isAllowOverride()){
+ prefStore.setValue(SHOW_COLLECTING_AREAS_IN_GENERAL_SECTION, preference.getValue());
+ }
+ }
+ preference = getPreferenceFromDB(PreferencePredicate.ShowLifeForm);
+ if (preference != null){
+ if(!prefStore.getBoolean(SHOW_LIFE_FORM_OVERRIDE) || !preference.isAllowOverride()){
+ prefStore.setValue(SHOW_LIFE_FORM, preference.getValue());
+ }
+ }
+ preference = getPreferenceFromDB(PreferencePredicate.DeterminationOnlyForFieldUnits);
+ if (preference != null){
+ if(!prefStore.getBoolean(DETERMINATION_ONLY_FOR_FIELD_UNITS_OVERRIDE) || !preference.isAllowOverride()){
+ prefStore.setValue(DETERMINATION_ONLY_FOR_FIELD_UNITS, preference.getValue());
+ }
+ }
+
+
+ //Name Details
+ NameDetailsConfigurator config = getPreferredNameDetailsConfiguration(false);
+ if (config != null ){
+ if (!prefStore.getBoolean(OVERRIDE_NAME_DETAILS) || !prefStore.getBoolean(ALLOW_OVERRIDE_NAME_DETAILS)){
+ setPreferredNameDetailsConfiguration(config, false);
+ }
+ }
+
+ //Distribution Editor
+ preference = getPreferenceFromDB(PreferencePredicate.AvailableDistributionAreaVocabularies);
+ if (preference != null){
+ if (!prefStore.getBoolean(DISTRIBUTION_AREA_PREFRENCES_ACTIVE_OVERRIDE) || !preference.isAllowOverride()){
+ prefStore.setValue(DISTRIBUTION_VOCABULARIES, preference.getValue());
+ }
+ }
+
+ preference = getPreferenceFromDB(PreferencePredicate.DistributionEditorActivated);
+ if (preference != null){
+ if (!prefStore.getBoolean(DISTRIBUTION_AREA_PREFRENCES_ACTIVE_OVERRIDE) || !preference.isAllowOverride()){
+ prefStore.setValue(DISTRIBUTION_AREA_PREFRENCES_ACTIVE, preference.getValue());
+ }
+ }
+
+}
+
+
+
+
+
+
+
}
BGBM BDI Projects / taxeditor.git / blobdiff