import java.util.UUID;
import org.apache.lucene.index.CorruptIndexException;
-import org.apache.lucene.queryParser.ParseException;
+import org.apache.lucene.queryparser.classic.ParseException;
import org.hibernate.LockOptions;
import org.hibernate.Session;
import org.hibernate.criterion.Criterion;
import eu.etaxonomy.cdm.api.facade.DerivedUnitFacadeNotSupportedException;
import eu.etaxonomy.cdm.api.service.DeleteResult;
import eu.etaxonomy.cdm.api.service.IOccurrenceService;
+import eu.etaxonomy.cdm.api.service.UpdateResult;
import eu.etaxonomy.cdm.api.service.config.DeleteConfiguratorBase;
import eu.etaxonomy.cdm.api.service.config.IIdentifiableEntityServiceConfigurator;
import eu.etaxonomy.cdm.api.service.config.SpecimenDeleteConfigurator;
import eu.etaxonomy.cdm.api.service.util.TaxonRelationshipEdge;
import eu.etaxonomy.cdm.common.monitor.IProgressMonitor;
import eu.etaxonomy.cdm.model.common.Annotation;
-import eu.etaxonomy.cdm.model.common.CdmBase;
import eu.etaxonomy.cdm.model.common.DefinedTerm;
import eu.etaxonomy.cdm.model.common.ICdmBase;
import eu.etaxonomy.cdm.model.common.ISourceable;
import eu.etaxonomy.cdm.model.molecular.DnaSample;
import eu.etaxonomy.cdm.model.molecular.Sequence;
import eu.etaxonomy.cdm.model.name.SpecimenTypeDesignation;
+import eu.etaxonomy.cdm.model.name.TaxonNameBase;
import eu.etaxonomy.cdm.model.occurrence.DerivationEvent;
import eu.etaxonomy.cdm.model.occurrence.DerivedUnit;
import eu.etaxonomy.cdm.model.occurrence.DeterminationEvent;
import eu.etaxonomy.cdm.model.view.AuditEvent;
import eu.etaxonomy.cdm.model.view.AuditEventRecord;
import eu.etaxonomy.cdm.persistence.dao.common.AuditEventSort;
+import eu.etaxonomy.cdm.persistence.dto.MergeResult;
import eu.etaxonomy.cdm.persistence.dto.UuidAndTitleCache;
import eu.etaxonomy.cdm.persistence.query.Grouping;
import eu.etaxonomy.cdm.persistence.query.MatchMode;
* @see eu.etaxonomy.cdm.api.service.IService#save(eu.etaxonomy.cdm.model.common.ICdmBase)
*/
@Override
- public UUID save(SpecimenOrObservationBase newInstance) {
+ public SpecimenOrObservationBase save(SpecimenOrObservationBase newInstance) {
units.add(newInstance);
return null;
}
return defaultService.list(example, includeProperties, limit, start, orderHints, propertyPaths);
}
- /**
- * @param clazz
- * @param matchStrategy
- * @param mergeStrategy
- * @return
- * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#deduplicate(java.lang.Class, eu.etaxonomy.cdm.strategy.match.IMatchStrategy, eu.etaxonomy.cdm.strategy.merge.IMergeStrategy)
- */
@Override
public int deduplicate(Class<? extends SpecimenOrObservationBase> clazz, IMatchStrategy matchStrategy, IMergeStrategy mergeStrategy) {
return defaultService.deduplicate(clazz, matchStrategy, mergeStrategy);
}
- /**
- * @param clazz
- * @param queryString
- * @param pageSize
- * @param pageNumber
- * @param orderHints
- * @param matchMode
- * @return
- * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#findTitleCache(java.lang.Class, java.lang.String, java.lang.Integer, java.lang.Integer, java.util.List, eu.etaxonomy.cdm.persistence.query.MatchMode)
- */
@Override
public Pager<SpecimenOrObservationBase> findTitleCache(Class<? extends SpecimenOrObservationBase> clazz, String queryString, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, MatchMode matchMode) {
return defaultService.findTitleCache(clazz, queryString, pageSize, pageNumber, orderHints, matchMode);
}
- /**
- * @return
- */
public Collection<SpecimenOrObservationBase<?>> getUnits() {
return units;
}
- /* (non-Javadoc)
- * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getFieldUnits(java.util.UUID)
- */
@Override
public Collection<FieldUnit> getFieldUnits(UUID derivedUnitUuid) {
return defaultService.getFieldUnits(derivedUnitUuid);
}
- /* (non-Javadoc)
- * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#pageByAssociatedTaxon(java.lang.Class, java.util.Set, java.lang.String, java.lang.Integer, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
- */
@Override
public <T extends SpecimenOrObservationBase> Pager<T> pageByAssociatedTaxon(Class<T> type,
Set<TaxonRelationshipEdge> includeRelationships, String taxonUUID, Integer maxDepth, Integer pageSize,
maxDepth, pageSize, pageNumber, orderHints, propertyPaths);
}
- /* (non-Javadoc)
- * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#moveDerivate(eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase, eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase, eu.etaxonomy.cdm.model.occurrence.DerivedUnit)
- */
- @Override
- public boolean moveDerivate(SpecimenOrObservationBase<?> from, SpecimenOrObservationBase<?> to, DerivedUnit derivate) {
- return defaultService.moveDerivate(from, to, derivate);
- }
- /* (non-Javadoc)
- * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#moveSequence(eu.etaxonomy.cdm.model.molecular.DnaSample, eu.etaxonomy.cdm.model.molecular.DnaSample, eu.etaxonomy.cdm.model.molecular.Sequence)
- */
@Override
- public boolean moveSequence(DnaSample from, DnaSample to, Sequence sequence) {
+ public UpdateResult moveSequence(DnaSample from, DnaSample to, Sequence sequence) {
return defaultService.moveSequence(from, to, sequence);
}
return defaultService.isDeletable(object, config);
}
- /* (non-Javadoc)
- * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#countDeterminations(eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase, eu.etaxonomy.cdm.model.taxon.TaxonBase)
- */
@Override
public int countDeterminations(SpecimenOrObservationBase occurence, TaxonBase taxonbase) {
return defaultService.countDeterminations(occurence, taxonbase);
}
- /* (non-Javadoc)
- * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#assembleFieldUnitDTO(eu.etaxonomy.cdm.model.occurrence.FieldUnit, java.util.UUID)
- */
@Override
public FieldUnitDTO assembleFieldUnitDTO(FieldUnit fieldUnit, UUID associatedTaxonUuid) {
return defaultService.assembleFieldUnitDTO(fieldUnit, associatedTaxonUuid);
}
- /* (non-Javadoc)
- * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#assemblePreservedSpecimenDTO(eu.etaxonomy.cdm.model.occurrence.DerivedUnit)
- */
@Override
public PreservedSpecimenDTO assemblePreservedSpecimenDTO(DerivedUnit derivedUnit) {
return defaultService.assemblePreservedSpecimenDTO(derivedUnit);
return defaultService.getNonCascadedAssociatedElements(specimen);
}
- /* (non-Javadoc)
- * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#deleteDerivateHierarchy(eu.etaxonomy.cdm.model.common.ICdmBase)
- */
- @Override
- public DeleteResult deleteDerivateHierarchy(CdmBase from, SpecimenDeleteConfigurator config) {
- return defaultService.deleteDerivateHierarchy(from, config);
- }
-
- /* (non-Javadoc)
- * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#delete(eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase, eu.etaxonomy.cdm.api.service.config.SpecimenDeleteConfigurator)
- */
@Override
public DeleteResult delete(SpecimenOrObservationBase<?> specimen, SpecimenDeleteConfigurator config) {
return defaultService.delete(specimen, config);
}
- /* (non-Javadoc)
- * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#listIndividualsAssociations(eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
- */
@Override
public Collection<IndividualsAssociation> listIndividualsAssociations(SpecimenOrObservationBase<?> specimen,
Integer limit, Integer start, List<OrderHint> orderHints, List<String> propertyPaths) {
return defaultService.listIndividualsAssociations(specimen, limit, start, orderHints, propertyPaths);
}
- /* (non-Javadoc)
- * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#listTypeDesignations(eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
- */
- @Override
- public Collection<SpecimenTypeDesignation> listTypeDesignations(SpecimenOrObservationBase<?> specimen,
- Integer limit, Integer start, List<OrderHint> orderHints, List<String> propertyPaths) {
- return defaultService.listTypeDesignations(specimen, limit, start, orderHints, propertyPaths);
- }
-
- /* (non-Javadoc)
- * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#listDescriptionsWithDescriptionSpecimen(eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
- */
@Override
public Collection<DescriptionBase<?>> listDescriptionsWithDescriptionSpecimen(
SpecimenOrObservationBase<?> specimen, Integer limit, Integer start, List<OrderHint> orderHints,
return defaultService.findByIdentifier(clazz, identifier, identifierType, matchmode, includeEntity, pageSize, pageNumber, propertyPaths);
}
- /* (non-Javadoc)
- * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getCharacterDataForSpecimen(eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase)
- */
@Override
public Collection<DescriptionElementBase> getCharacterDataForSpecimen(SpecimenOrObservationBase<?> arg0) {
return defaultService.getCharacterDataForSpecimen(arg0);
}
- /* (non-Javadoc)
- * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getCharacterDataForSpecimen(java.util.UUID)
- */
@Override
public Collection<DescriptionElementBase> getCharacterDataForSpecimen(UUID arg0) {
return getCharacterDataForSpecimen(arg0);
}
- /* (non-Javadoc)
- * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getMostSignificantIdentifier(eu.etaxonomy.cdm.model.occurrence.DerivedUnit)
- */
@Override
public String getMostSignificantIdentifier(DerivedUnit derivedUnit) {
return defaultService.getMostSignificantIdentifier(derivedUnit);
}
- /* (non-Javadoc)
- * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#countOccurrences(eu.etaxonomy.cdm.api.service.config.IIdentifiableEntityServiceConfigurator)
- */
@Override
public int countOccurrences(IIdentifiableEntityServiceConfigurator<SpecimenOrObservationBase> config) {
return defaultService.countOccurrences(config);
return defaultService.getAllHierarchyDerivatives(specimen);
}
+
+ @Override
+ public DeleteResult delete(UUID uuid) {
+ return defaultService.delete(uuid);
+ }
+
+ @Override
+ public DeleteResult delete(Collection<UUID> arg0) {
+ return defaultService.delete(arg0);
+ }
+
+
+ @Override
+ public List<SpecimenOrObservationBase> merge(List<SpecimenOrObservationBase> arg0) {
+ return defaultService.merge(arg0);
+ }
+
+ @Override
+ public UpdateResult moveDerivate(UUID arg0, UUID arg1, UUID arg2) {
+ return defaultService.moveDerivate(arg0, arg1, arg2);
+ }
+
+ @Override
+ public boolean moveDerivate(SpecimenOrObservationBase<?> from, SpecimenOrObservationBase<?> to, DerivedUnit derivate) {
+ return defaultService.moveDerivate(from, to, derivate);
+ }
+
+ @Override
+ public UpdateResult moveSequence(UUID arg0, UUID arg1, UUID arg2) {
+ return defaultService.moveSequence(arg0, arg1, arg2);
+ }
+
+ @Override
+ public Pager<Media> getMediainHierarchy(SpecimenOrObservationBase arg0, Integer arg1, Integer arg2,
+ List<String> arg3) {
+ return defaultService.getMediainHierarchy(arg0, arg1, arg2, arg3);
+ }
+
+ @Override
+ public List<MergeResult<SpecimenOrObservationBase>> merge(List<SpecimenOrObservationBase> arg0, boolean arg1) {
+ return defaultService.merge(arg0, arg1);
+ }
+
+ @Override
+ public MergeResult<SpecimenOrObservationBase> merge(SpecimenOrObservationBase arg0, boolean arg1) {
+ return defaultService.merge(arg0, arg1);
+ }
+
/**
* {@inheritDoc}
*/
@Override
- public DeleteResult delete(UUID arg0) {
- return defaultService.delete(arg0);
+ public Collection<TaxonBase<?>> listAssociatedTaxa(SpecimenOrObservationBase<?> arg0, Integer arg1, Integer arg2,
+ List<OrderHint> arg3, List<String> arg4) {
+ return defaultService.listAssociatedTaxa(arg0, arg1, arg2, arg3, arg4);
+ }
+
+ @Override
+ public SpecimenOrObservationBase loadWithUpdate(UUID arg0) {
+ return defaultService.loadWithUpdate(arg0);
+ }
+
+ /**
+ * {@inheritDoc}
+ */
+ @Override
+ public DeleteResult delete(UUID arg0, SpecimenDeleteConfigurator arg1) {
+ return defaultService.delete(arg0, arg1);
+ }
+
+ /**
+ * {@inheritDoc}
+ */
+ @Override
+ public Pager<SpecimenOrObservationBase> list(Class<? extends SpecimenOrObservationBase> arg0, TaxonNameBase arg1,
+ Integer arg2, Integer arg3, List<OrderHint> arg4, List<String> arg5) {
+ return defaultService.list(arg0, arg1, arg2, arg3, arg4, arg5);
}
+ /**
+ * {@inheritDoc}
+ */
+ @Override
+ public Collection<DeterminationEvent> listDeterminationEvents(SpecimenOrObservationBase<?> arg0, Integer arg1,
+ Integer arg2, List<OrderHint> arg3, List<String> arg4) {
+ return defaultService.listDeterminationEvents(arg0, arg1, arg2, arg3, arg4);
+ }
+
+ @Override
+ public Collection<TaxonBase<?>> listDeterminedTaxa(SpecimenOrObservationBase<?> arg0, Integer arg1, Integer arg2,
+ List<OrderHint> arg3, List<String> arg4) {
+ return defaultService.listDeterminedTaxa(arg0, arg1, arg2, arg3, arg4);
+ }
+
+ @Override
+ public Collection<TaxonBase<?>> listIndividualsAssociationTaxa(SpecimenOrObservationBase<?> arg0, Integer arg1,
+ Integer arg2, List<OrderHint> arg3, List<String> arg4) {
+ return defaultService.listIndividualsAssociationTaxa(arg0, arg1, arg2, arg3, arg4);
+ }
+
+ /**
+ * {@inheritDoc}
+ */
+ @Override
+ public List<SpecimenOrObservationBase> load(List<UUID> arg0, List<String> arg1) {
+ return defaultService.load(arg0, arg1);
+ }
+
+ @Override
+ public Collection<TaxonBase<?>> listTypeDesignationTaxa(DerivedUnit arg0, Integer arg1, Integer arg2,
+ List<OrderHint> arg3, List<String> arg4) {
+ return defaultService.listTypeDesignationTaxa(arg0, arg1, arg2, arg3, arg4);
+ }
+
+ @Override
+ public Map<DerivedUnit, Collection<SpecimenTypeDesignation>> listTypeDesignations(Collection<DerivedUnit> arg0,
+ Integer arg1, Integer arg2, List<OrderHint> arg3, List<String> arg4) {
+ return defaultService.listTypeDesignations(arg0, arg1, arg2, arg3, arg4);
+ }
+
+ @Override
+ public Collection<SpecimenTypeDesignation> listTypeDesignations(DerivedUnit arg0, Integer arg1, Integer arg2,
+ List<OrderHint> arg3, List<String> arg4) {
+ return defaultService.listTypeDesignations(arg0, arg1, arg2, arg3, arg4);
+ }
+
+ @Override
+ public List<DerivedUnit> getAllChildDerivatives(UUID arg0) {
+ return defaultService.getAllChildDerivatives(arg0);
+ }
+
+
}
BGBM BDI Projects / taxeditor.git / blobdiff