cdmlib.git
9 years ago[maven-release-plugin] prepare release cdmlib-parent-3.6.0 root/tags/cdmlib/cdmlib-parent-3.6.0 cdmlib-parent-3.6.0
edit-jenkins [Thu, 4 Jun 2015 11:42:48 +0000 (11:42 +0000)]
[maven-release-plugin] prepare release cdmlib-parent-3.6.0

9 years agochange order of update steps
Andreas M��ller [Thu, 4 Jun 2015 10:45:54 +0000 (10:45 +0000)]
change order of update steps

9 years agofix team cache strategy, add et al. if hasMoreMembers is set
Katja Luther [Thu, 4 Jun 2015 09:33:09 +0000 (09:33 +0000)]
fix team cache strategy, add et al. if hasMoreMembers is set

9 years agofix caseType bug for IndexDropper #4843
Andreas M��ller [Wed, 3 Jun 2015 17:44:15 +0000 (17:44 +0000)]
fix caseType bug for IndexDropper   #4843

9 years agoupdate cdmlib-remote-webapp test h2 to model 3.6
Andreas M��ller [Wed, 3 Jun 2015 16:56:29 +0000 (16:56 +0000)]
update cdmlib-remote-webapp test h2 to model 3.6

9 years agofixing broken image in swagger-ui
Andreas Kohlbecker [Wed, 3 Jun 2015 15:20:36 +0000 (17:20 +0200)]
fixing broken image in swagger-ui

9 years agodelete taxonnode if taxon is used somewhere else fixed
Katja Luther [Wed, 3 Jun 2015 13:19:22 +0000 (13:19 +0000)]
delete taxonnode if taxon is used somewhere else fixed

9 years agomerge model changes 36 into trunk
Andreas M��ller [Wed, 3 Jun 2015 13:00:15 +0000 (13:00 +0000)]
merge model changes 36 into trunk

9 years agominor cdm-3.6 origin/cdm-3.6 root/branches/cdmlib/cdm-3.6
Andreas M��ller [Wed, 3 Jun 2015 12:56:51 +0000 (12:56 +0000)]
minor

9 years agomerge trunk into branch 36
Andreas M��ller [Wed, 3 Jun 2015 12:56:25 +0000 (12:56 +0000)]
merge trunk into branch 36

9 years agomerge trunk into 36 branch
Andreas M��ller [Wed, 3 Jun 2015 12:48:13 +0000 (12:48 +0000)]
merge trunk into 36 branch

9 years agojaxb annotation fixed for agentRelations #3583
Andreas M��ller [Wed, 3 Jun 2015 11:00:41 +0000 (11:00 +0000)]
jaxb annotation fixed for agentRelations  #3583

9 years agorename authorTeam -> authorship #4332 for name authors
Andreas M��ller [Wed, 3 Jun 2015 11:00:01 +0000 (11:00 +0000)]
rename authorTeam -> authorship  #4332 for name authors

9 years agoFix UniqueIndexDropper for PostGreSQL #4843
Andreas M��ller [Tue, 2 Jun 2015 22:30:13 +0000 (22:30 +0000)]
Fix UniqueIndexDropper for PostGreSQL  #4843

9 years agomerge trunk into 3.6 branch
Andreas M��ller [Tue, 2 Jun 2015 12:47:27 +0000 (12:47 +0000)]
merge trunk into 3.6 branch

9 years agomerge trunk into 3.6 branch
Andreas M��ller [Tue, 2 Jun 2015 12:43:24 +0000 (12:43 +0000)]
merge trunk into 3.6 branch

9 years agominor
Katja Luther [Tue, 2 Jun 2015 12:41:38 +0000 (12:41 +0000)]
minor

9 years agominor
Katja Luther [Tue, 2 Jun 2015 12:39:47 +0000 (12:39 +0000)]
minor

9 years agominor
Katja Luther [Tue, 2 Jun 2015 12:36:14 +0000 (12:36 +0000)]
minor

9 years agominor
Andreas M��ller [Tue, 2 Jun 2015 12:33:30 +0000 (12:33 +0000)]
minor

9 years agominor
Andreas M��ller [Tue, 2 Jun 2015 12:32:48 +0000 (12:32 +0000)]
minor

9 years agominor
Andreas M��ller [Tue, 2 Jun 2015 12:32:10 +0000 (12:32 +0000)]
minor

9 years agominor
Andreas M��ller [Tue, 2 Jun 2015 12:25:48 +0000 (12:25 +0000)]
minor

9 years agoMove FullCoverageDataGenerator from test to real, to avoid dependency problems.
Andreas M��ller [Tue, 2 Jun 2015 12:24:57 +0000 (12:24 +0000)]
Move FullCoverageDataGenerator from test to real, to avoid dependency problems.

9 years agolast changes for #4869
Katja Luther [Tue, 2 Jun 2015 12:14:07 +0000 (12:14 +0000)]
last changes for #4869

9 years agoadd SortMode enum and change the param for sorting of loadChildNodesOfTaxonNode from...
Katja Luther [Tue, 2 Jun 2015 11:44:51 +0000 (11:44 +0000)]
add SortMode enum and change the param for sorting of loadChildNodesOfTaxonNode from boolean to SortMode enum see #4226

9 years agoperformance improvement in AbstractBeanProcessor.getMergedExcludes(), avoids the...
Andreas Kohlbecker [Tue, 2 Jun 2015 10:47:52 +0000 (12:47 +0200)]
performance improvement in AbstractBeanProcessor.getMergedExcludes(), avoids the merging of the collection each time the processBean() method is called, this can take place several 10 thousand times for one request - contributes to #4925

9 years agomissing @Override
Andreas Kohlbecker [Tue, 2 Jun 2015 10:44:10 +0000 (12:44 +0200)]
missing @Override

9 years agochanges for #3998
Katja Luther [Tue, 2 Jun 2015 09:43:06 +0000 (09:43 +0000)]
changes for #3998

9 years agoremove dependeny to test (FullDataCoverage...)
Andreas M��ller [Mon, 1 Jun 2015 15:21:11 +0000 (15:21 +0000)]
remove dependeny to test (FullDataCoverage...)

9 years agoadapt FullCoverageData method
Andreas M��ller [Mon, 1 Jun 2015 14:54:57 +0000 (14:54 +0000)]
adapt FullCoverageData method

9 years agofix setStatisticalValue method
Andreas M��ller [Mon, 1 Jun 2015 14:54:07 +0000 (14:54 +0000)]
fix setStatisticalValue method

9 years agominor
Andreas M��ller [Mon, 1 Jun 2015 14:53:34 +0000 (14:53 +0000)]
minor

9 years agoadding c3p0 as test dependency - contibution to #4955 root/tags/cdmlib/2015-06-01_01 2015-06-01_01
Andreas Kohlbecker [Mon, 1 Jun 2015 10:45:45 +0000 (12:45 +0200)]
adding c3p0 as test dependency - contibution to #4955

9 years agoexcluding all jdbc drivers from the webapp - contribution to #4955
Andreas Kohlbecker [Mon, 1 Jun 2015 10:05:17 +0000 (12:05 +0200)]
excluding all jdbc drivers from the webapp - contribution to #4955

9 years ago - fixed compile error and possible NPE #4810
Patric Plitzner [Mon, 1 Jun 2015 08:05:33 +0000 (08:05 +0000)]
 - fixed compile error and possible NPE #4810

9 years agofix test and add factory method #3583
Andreas M��ller [Fri, 29 May 2015 15:59:30 +0000 (15:59 +0000)]
fix test and add factory method  #3583

9 years agosome cleanup, renaming and a test for TaxonNodeAgentRelation #3583
Andreas M��ller [Fri, 29 May 2015 15:43:55 +0000 (15:43 +0000)]
some cleanup, renaming and a test for TaxonNodeAgentRelation  #3583

9 years agomore getters/adders, update script, vocabulary and test vocabulary for TaxonNodeAgent...
Andreas M��ller [Fri, 29 May 2015 15:13:46 +0000 (15:13 +0000)]
more getters/adders, update script, vocabulary and test vocabulary for TaxonNodeAgentRelation #3583

9 years agofirst implementation of TaxonNodeAgentRelation #3583
Andreas M��ller [Fri, 29 May 2015 12:50:48 +0000 (12:50 +0000)]
first implementation of TaxonNodeAgentRelation  #3583

9 years agofix naming of ClassificationServiceDeepTest
Andreas M��ller [Fri, 29 May 2015 12:49:47 +0000 (12:49 +0000)]
fix naming of ClassificationServiceDeepTest

9 years agominor
Andreas M��ller [Fri, 29 May 2015 12:23:08 +0000 (12:23 +0000)]
minor

9 years agominor cleanup
Andreas M��ller [Fri, 29 May 2015 12:22:38 +0000 (12:22 +0000)]
minor cleanup

9 years agomerge trunk to model 36
Andreas M��ller [Fri, 29 May 2015 10:45:33 +0000 (10:45 +0000)]
merge trunk to model 36

9 years agominor
Andreas M��ller [Fri, 29 May 2015 10:43:13 +0000 (10:43 +0000)]
minor

9 years agomerging trunk into 3.6 branche
Andreas M��ller [Fri, 29 May 2015 09:23:38 +0000 (09:23 +0000)]
merging trunk into 3.6 branche

9 years agominor
Andreas M��ller [Fri, 29 May 2015 09:09:22 +0000 (09:09 +0000)]
minor

9 years agofix for #4869
Katja Luther [Thu, 28 May 2015 08:41:35 +0000 (08:41 +0000)]
fix for #4869

9 years agominor
Andreas M��ller [Thu, 28 May 2015 08:20:46 +0000 (08:20 +0000)]
minor

9 years agoremove ExcelImportMapping.properties
Andreas M��ller [Thu, 28 May 2015 08:20:17 +0000 (08:20 +0000)]
remove ExcelImportMapping.properties

9 years agopreliminary fix for not compiling UpdateResult
Andreas M��ller [Wed, 27 May 2015 15:16:34 +0000 (15:16 +0000)]
preliminary fix for not compiling UpdateResult

9 years agominor
Andreas M��ller [Wed, 27 May 2015 15:14:37 +0000 (15:14 +0000)]
minor

9 years agocleanup code
Andreas M��ller [Wed, 27 May 2015 14:53:20 +0000 (14:53 +0000)]
cleanup code

9 years agotry to fix ignored test #3279
Andreas M��ller [Wed, 27 May 2015 14:39:45 +0000 (14:39 +0000)]
try to fix ignored test  #3279

9 years agoset failing test to ignore
Andreas M��ller [Wed, 27 May 2015 14:19:16 +0000 (14:19 +0000)]
set failing test to ignore

9 years ago - limited the amount of exceptions stored in a delete result #4810
Patric Plitzner [Wed, 27 May 2015 12:10:22 +0000 (12:10 +0000)]
 - limited the amount of exceptions stored in a delete result #4810

9 years agojavadoc
Andreas M��ller [Wed, 27 May 2015 10:58:22 +0000 (10:58 +0000)]
javadoc

9 years agoclean up old AbcdImport test #3279
Andreas M��ller [Wed, 27 May 2015 10:51:41 +0000 (10:51 +0000)]
clean up old AbcdImport test  #3279

9 years agorename ABCD import tests
Andreas M��ller [Wed, 27 May 2015 08:20:27 +0000 (08:20 +0000)]
rename ABCD import tests

9 years agominor
Andreas M��ller [Wed, 27 May 2015 08:12:57 +0000 (08:12 +0000)]
minor

9 years agominor cleanup
Andreas M��ller [Tue, 26 May 2015 16:03:50 +0000 (16:03 +0000)]
minor cleanup

9 years agominor changes, renaming, code formatting, javadoc
Andreas M��ller [Tue, 26 May 2015 16:02:34 +0000 (16:02 +0000)]
minor changes, renaming, code formatting, javadoc

9 years agoadding test for term titleCache creation #3148
Andreas M��ller [Tue, 26 May 2015 15:57:24 +0000 (15:57 +0000)]
adding test for term titleCache creation #3148

9 years agominor
Andreas M��ller [Tue, 26 May 2015 14:06:05 +0000 (14:06 +0000)]
minor

9 years agoimprove handling of titlecache in terms #3148
Andreas M��ller [Tue, 26 May 2015 13:46:42 +0000 (13:46 +0000)]
improve handling of titlecache in terms  #3148

9 years agoimprove handling of titlecache in terms #3148
Andreas M��ller [Tue, 26 May 2015 13:07:29 +0000 (13:07 +0000)]
improve handling of titlecache in terms  #3148

9 years agomoving UuidAndTitleCache from model to persistence. #4799
Andreas M��ller [Tue, 26 May 2015 11:40:27 +0000 (11:40 +0000)]
moving UuidAndTitleCache from model to persistence. #4799

9 years agominor
Andreas M��ller [Tue, 26 May 2015 09:19:34 +0000 (09:19 +0000)]
minor

9 years agochange method name
Andreas M��ller [Tue, 26 May 2015 09:17:30 +0000 (09:17 +0000)]
change method name

9 years agooption to skip json processing for debugging purposes, see #4925
Andreas Kohlbecker [Sun, 24 May 2015 21:20:27 +0000 (23:20 +0200)]
option to skip json processing for debugging purposes, see #4925

9 years agoreverting c3p0 version to 0.9.2, v 0.9.5 was causing problems in the server, so we...
Andreas Kohlbecker [Sun, 24 May 2015 20:49:10 +0000 (22:49 +0200)]
reverting c3p0 version to 0.9.2, v 0.9.5 was causing problems in the server, so we better stay on the save side in the cdmlib

9 years agodoumentation
Andreas Kohlbecker [Fri, 22 May 2015 12:58:54 +0000 (14:58 +0200)]
doumentation

9 years agoupgrading c3p0 from 0.9.2 to 0.9.5
Andreas Kohlbecker [Fri, 22 May 2015 09:22:17 +0000 (11:22 +0200)]
upgrading c3p0 from 0.9.2 to 0.9.5

9 years agoSimplify table structure for CategoricalData-StateData and and QuantitativeData_Stat...
Andreas M��ller [Fri, 22 May 2015 19:38:12 +0000 (19:38 +0000)]
Simplify table structure for CategoricalData-StateData and  and QuantitativeData_StatisticalMeasurementValue #4841   - fixing update script for MySQL

9 years agoSimplify table structure for CategoricalData-StateData and and QuantitativeData_Stat...
Andreas M��ller [Fri, 22 May 2015 16:13:43 +0000 (16:13 +0000)]
Simplify table structure for CategoricalData-StateData and  and QuantitativeData_StatisticalMeasurementValue #4841

9 years agoSimplify table structure for CategoricalData-StateData and and QuantitativeData_Stat...
Andreas M��ller [Fri, 22 May 2015 16:11:14 +0000 (16:11 +0000)]
Simplify table structure for CategoricalData-StateData and  and QuantitativeData_StatisticalMeasurementValue #4841

9 years agofix tests for model 3.6
Andreas M��ller [Fri, 22 May 2015 15:29:55 +0000 (15:29 +0000)]
fix tests for model 3.6

9 years agofix RegEx dot bugs in NonViralName RegExs
Andreas M��ller [Fri, 22 May 2015 15:08:27 +0000 (15:08 +0000)]
fix RegEx dot bugs in NonViralName RegExs

9 years agominor
Andreas M��ller [Fri, 22 May 2015 12:48:35 +0000 (12:48 +0000)]
minor

9 years agomerge trunk into model change 3.6
Andreas M��ller [Fri, 22 May 2015 12:24:34 +0000 (12:24 +0000)]
merge trunk into model change 3.6

9 years agocleanup
Andreas M��ller [Fri, 22 May 2015 12:00:27 +0000 (12:00 +0000)]
cleanup

9 years agoadapt nonViralNameParser to model changes
Andreas M��ller [Fri, 22 May 2015 11:53:01 +0000 (11:53 +0000)]
adapt nonViralNameParser to model changes

9 years agoupdated NonViralNameParserImplTest
Andreas M��ller [Fri, 22 May 2015 11:51:38 +0000 (11:51 +0000)]
updated NonViralNameParserImplTest

9 years agoupdate schemaUpdater35_36
Andreas M��ller [Fri, 22 May 2015 11:50:29 +0000 (11:50 +0000)]
update schemaUpdater35_36

9 years agoadd MnTableRemover
Andreas M��ller [Fri, 22 May 2015 11:49:52 +0000 (11:49 +0000)]
add MnTableRemover

9 years agocleanup
Andreas M��ller [Fri, 22 May 2015 11:49:35 +0000 (11:49 +0000)]
cleanup

9 years agocleanup
Andreas M��ller [Fri, 22 May 2015 11:49:06 +0000 (11:49 +0000)]
cleanup

9 years agoadapt ModelUpdate tester
Andreas M��ller [Fri, 22 May 2015 11:48:29 +0000 (11:48 +0000)]
adapt ModelUpdate tester

9 years agointegrate parameters into constructor for updaters
Andreas M��ller [Thu, 21 May 2015 14:36:16 +0000 (14:36 +0000)]
integrate parameters into constructor for updaters

9 years agoadded dirs and files to ignore
Cherian Mathew [Thu, 21 May 2015 14:23:41 +0000 (16:23 +0200)]
added dirs and files to ignore

9 years agoadded id to uuidAndTitleCache #4799 (bugfix)
Andreas M��ller [Wed, 20 May 2015 15:39:11 +0000 (15:39 +0000)]
added id to uuidAndTitleCache  #4799  (bugfix)

9 years agoadded id to uuidAndTitleCache
Andreas M��ller [Wed, 20 May 2015 15:23:31 +0000 (15:23 +0000)]
added id to uuidAndTitleCache

9 years agoincreasing the permGenSpace in the eclipse launcher root/tags/cdmlib/2015-05-20_01 2015-05-20_01
Andreas Kohlbecker [Wed, 20 May 2015 14:38:56 +0000 (16:38 +0200)]
increasing the permGenSpace in the eclipse launcher

9 years agofixing problem with missing autinitialization of titleCaches, contributes to #4919
Andreas Kohlbecker [Wed, 20 May 2015 14:38:26 +0000 (16:38 +0200)]
fixing problem with missing autinitialization of titleCaches, contributes to #4919

9 years ago - implemented importing of DNA ABCD units
Patric Plitzner [Wed, 20 May 2015 12:03:56 +0000 (12:03 +0000)]
 - implemented importing of DNA ABCD units
 - DNA sampled will be attached to already existing specimens
 - re-enabled tests

9 years agosloving NPE in AdvancedBeanInitializer
Andreas Kohlbecker [Wed, 20 May 2015 11:05:38 +0000 (13:05 +0200)]
sloving NPE in AdvancedBeanInitializer

9 years agofixing bug related to generic types
Andreas Kohlbecker [Wed, 20 May 2015 09:27:27 +0000 (11:27 +0200)]
fixing bug related to generic types

9 years agofurther performance improvements: - better autoinitialization of collection items...
Andreas Kohlbecker [Tue, 19 May 2015 14:54:28 +0000 (16:54 +0200)]
further performance improvements: - better autoinitialization of collection items, - fixing bug in AdvancedBeanInitializer: adding missing LEFT to JOIN FETCH

9 years agofixing bug in matchesLevel method
Andreas Kohlbecker [Tue, 19 May 2015 12:33:55 +0000 (14:33 +0200)]
fixing bug in matchesLevel method

9 years agoadding missing sources
Andreas Kohlbecker [Tue, 19 May 2015 12:31:46 +0000 (14:31 +0200)]
adding missing sources