cdmlib.git
23 months agocleanup
Andreas Müller [Thu, 28 Jul 2022 23:04:48 +0000 (01:04 +0200)]
cleanup

23 months agoref #10101 catch and log no-session exception in PostMergeEntityListener instead...
Andreas Müller [Thu, 28 Jul 2022 20:13:17 +0000 (22:13 +0200)]
ref #10101 catch and log no-session exception in PostMergeEntityListener instead of removing initialization completely

23 months agoref #10101 again preliminary remove children initialization in PostMergeEntityListener
Andreas Müller [Thu, 28 Jul 2022 19:34:59 +0000 (21:34 +0200)]
ref #10101 again preliminary remove children initialization in PostMergeEntityListener

23 months agoreturn false in finally again, just in case this is important
Andreas Müller [Thu, 28 Jul 2022 18:59:05 +0000 (20:59 +0200)]
return false in finally again, just in case this is important

23 months agoref #10101 add the childNodes touche for TaxonNode and TermNode again in PostMergeEnt...
Andreas Müller [Thu, 28 Jul 2022 18:09:10 +0000 (20:09 +0200)]
ref #10101 add the childNodes touche for TaxonNode and TermNode again in PostMergeEntityListener

23 months agoref #10101 preliminary remove children initialization in PostMergeEntityListener
Andreas Müller [Thu, 28 Jul 2022 18:02:22 +0000 (20:02 +0200)]
ref #10101 preliminary remove children initialization in PostMergeEntityListener

23 months agoref #10101 adapt PolytomousKeyNodeServiceTest to new orphaned delete method in services
Andreas Müller [Thu, 28 Jul 2022 17:27:25 +0000 (19:27 +0200)]
ref #10101 adapt PolytomousKeyNodeServiceTest to new orphaned delete method in services

23 months agocleanup and allow merge with objectsToRemove in all services
Andreas Müller [Thu, 28 Jul 2022 17:20:05 +0000 (19:20 +0200)]
cleanup and allow merge with objectsToRemove in all services

23 months agoref #10101 add sortindex fix to taxon node and term node, too
Andreas Müller [Thu, 28 Jul 2022 16:24:27 +0000 (18:24 +0200)]
ref #10101 add sortindex fix to taxon node and term node, too

23 months agoref #10101 fix sortindex gaps in polytomous key merge
Andreas Müller [Thu, 28 Jul 2022 16:23:47 +0000 (18:23 +0200)]
ref #10101 fix sortindex gaps in polytomous key merge

23 months agoadd cleansweep to PolytomousKeyNodeServiceTest tests
Andreas Müller [Thu, 28 Jul 2022 16:08:22 +0000 (18:08 +0200)]
add cleansweep to PolytomousKeyNodeServiceTest tests

23 months agojavadoc
Andreas Müller [Thu, 28 Jul 2022 15:52:45 +0000 (17:52 +0200)]
javadoc

23 months agoref #10101 fix possbile null value in refreshNodeNumbering
Andreas Müller [Thu, 28 Jul 2022 15:52:01 +0000 (17:52 +0200)]
ref #10101 fix possbile null value in refreshNodeNumbering

23 months agocleanup
Andreas Müller [Thu, 28 Jul 2022 15:28:36 +0000 (17:28 +0200)]
cleanup

23 months agojavadoc
Andreas Müller [Thu, 28 Jul 2022 15:26:35 +0000 (17:26 +0200)]
javadoc

23 months agoref #10101 add commented implementation for trying to handle orphan removal in the...
Andreas Müller [Thu, 28 Jul 2022 15:25:29 +0000 (17:25 +0200)]
ref #10101  add commented implementation for trying to handle orphan removal in the PostMergeEntityListener

23 months agohandle non-persisted objects in delete()
Andreas Müller [Thu, 28 Jul 2022 14:48:28 +0000 (16:48 +0200)]
handle non-persisted objects in delete()

23 months agoref #3722, ref #8127, ref #5536, ref #10101 adapt test for removing PKNode and add...
Andreas Müller [Thu, 28 Jul 2022 14:46:32 +0000 (16:46 +0200)]
ref #3722, ref #8127, ref #5536, ref #10101 adapt test for removing PKNode and add new test for moving node and add LIE handling for node removal

23 months agocleanup
Andreas Müller [Thu, 28 Jul 2022 14:41:59 +0000 (16:41 +0200)]
cleanup

23 months agoadd logging for exceptions in CdmPreDataChangeListener
Andreas Müller [Thu, 28 Jul 2022 14:40:37 +0000 (16:40 +0200)]
add logging for exceptions in CdmPreDataChangeListener

23 months agoref #10101 add some javadoc
Andreas Müller [Thu, 28 Jul 2022 12:05:38 +0000 (14:05 +0200)]
ref #10101  add some javadoc

23 months agocleanup
Andreas Müller [Thu, 28 Jul 2022 08:45:35 +0000 (10:45 +0200)]
cleanup

23 months agoref #3722, ref #8127, ref #5536 preliminary make TermNode.children not orphanRemoval...
Andreas Müller [Wed, 27 Jul 2022 22:47:41 +0000 (00:47 +0200)]
ref #3722, ref #8127, ref #5536 preliminary make TermNode.children not orphanRemoval again

23 months agocleanup
Andreas Müller [Wed, 27 Jul 2022 22:47:14 +0000 (00:47 +0200)]
cleanup

23 months agoref #3722, ref #8127, ref #5536 remove sortIndex field check from SortIndexUpdaterWra...
Andreas Müller [Wed, 27 Jul 2022 22:29:58 +0000 (00:29 +0200)]
ref #3722, ref #8127, ref #5536 remove sortIndex field check from SortIndexUpdaterWrapperTest

23 months agocleanup
Andreas Müller [Wed, 27 Jul 2022 21:59:19 +0000 (23:59 +0200)]
cleanup

23 months agoref #3722, ref #8127, ref #5536 preliminary make TaxonNode.children not orphanRemoval...
Andreas Müller [Wed, 27 Jul 2022 21:44:55 +0000 (23:44 +0200)]
ref #3722, ref #8127, ref #5536 preliminary make TaxonNode.children not orphanRemoval again

23 months agoref #3722, ref #8127, ref #5536 remove sortindex in jaxb annotations for tree lists
Andreas Müller [Wed, 27 Jul 2022 19:26:14 +0000 (21:26 +0200)]
ref #3722, ref #8127, ref #5536 remove sortindex in jaxb annotations for tree lists

23 months agoref #3722, ref #8127, ref #5536 add test for PKNode merge
Andreas Müller [Wed, 27 Jul 2022 19:08:36 +0000 (21:08 +0200)]
ref #3722, ref #8127, ref #5536 add test for PKNode merge

23 months agocleanup and javadoc
Andreas Müller [Wed, 27 Jul 2022 19:06:11 +0000 (21:06 +0200)]
cleanup and javadoc

23 months agoremove cascade to parent and key
Andreas Müller [Wed, 27 Jul 2022 19:04:01 +0000 (21:04 +0200)]
remove cascade to parent and key

23 months agoadd cascade delete to PK->PKNroot
Andreas Müller [Wed, 27 Jul 2022 19:02:38 +0000 (21:02 +0200)]
add cascade delete to PK->PKNroot

23 months agoref #3722, ref #8127, ref #10067, ref #5536 add orphan removal to ordered lists to...
Andreas Müller [Wed, 27 Jul 2022 18:56:32 +0000 (20:56 +0200)]
ref #3722, ref #8127, ref #10067, ref #5536 add orphan removal to ordered lists to avoid null value, sortindex and record not deleted issues

23 months agomove children up to parent in code
Andreas Müller [Wed, 27 Jul 2022 18:44:34 +0000 (20:44 +0200)]
move children up to parent in code

23 months agocleanup
Andreas Müller [Wed, 27 Jul 2022 12:53:08 +0000 (14:53 +0200)]
cleanup

23 months agoref #8127 reenable null value removal in Util class
Andreas Müller [Wed, 27 Jul 2022 12:52:00 +0000 (14:52 +0200)]
ref #8127 reenable null value removal in Util class

23 months agoref #3722, ref #8127, ref #10067 fully remove sortindex and OrderBy comments
Andreas Müller [Wed, 27 Jul 2022 07:38:15 +0000 (09:38 +0200)]
ref #3722, ref #8127, ref #10067 fully remove sortindex and OrderBy comments

23 months agocleanup
Andreas Müller [Wed, 27 Jul 2022 07:36:40 +0000 (09:36 +0200)]
cleanup

23 months agoref #10096 unified taxon node status handling during taxon node comparison (cont...
Andreas Müller [Tue, 26 Jul 2022 23:04:56 +0000 (01:04 +0200)]
ref #10096 unified taxon node status handling during taxon node comparison (cont. II)

23 months agocleanup
Andreas Müller [Tue, 26 Jul 2022 22:11:45 +0000 (00:11 +0200)]
cleanup

23 months agoref #10096 unified taxon node status handling during taxon node comparison (cont.)
Andreas Müller [Tue, 26 Jul 2022 22:11:30 +0000 (00:11 +0200)]
ref #10096 unified taxon node status handling during taxon node comparison (cont.)

23 months agoref #10096 unified taxon node status handling during taxon node comparison
Andreas Müller [Tue, 26 Jul 2022 21:55:23 +0000 (23:55 +0200)]
ref #10096 unified taxon node status handling during taxon node comparison

23 months agocleanup with minor change in TaxonNodeNaturalComparator
Andreas Müller [Tue, 26 Jul 2022 21:54:02 +0000 (23:54 +0200)]
cleanup with minor change in TaxonNodeNaturalComparator

23 months agoref #10057 fix detail only in OriginalSourceFormatter
Andreas Müller [Tue, 26 Jul 2022 18:32:16 +0000 (20:32 +0200)]
ref #10057 fix detail only in OriginalSourceFormatter

23 months agoref #10057 adapt TaxonBaseDefaultCacheStrategy to secSource.accessed
Andreas Müller [Tue, 26 Jul 2022 18:07:43 +0000 (20:07 +0200)]
ref #10057 adapt TaxonBaseDefaultCacheStrategy to secSource.accessed

23 months agoref #10057 adapt OriginalSourceFormatter to source.accessed (partly preliminary)
Andreas Müller [Tue, 26 Jul 2022 17:52:37 +0000 (19:52 +0200)]
ref #10057 adapt OriginalSourceFormatter to source.accessed (partly preliminary)

23 months agoref #10057 add IDynamicReference
Andreas Müller [Tue, 26 Jul 2022 17:50:40 +0000 (19:50 +0200)]
ref #10057 add IDynamicReference

23 months agocleanup
Andreas Müller [Tue, 26 Jul 2022 17:48:50 +0000 (19:48 +0200)]
cleanup

23 months agocleanup
Andreas Müller [Tue, 26 Jul 2022 11:42:09 +0000 (13:42 +0200)]
cleanup

23 months agoref #10096 fix cdmlight export test for taxon node status
Andreas Müller [Tue, 26 Jul 2022 11:41:53 +0000 (13:41 +0200)]
ref #10096 fix cdmlight export test for taxon node status

23 months agoref #10096 fix placement status and handle missing status as null (not "included")
Andreas Müller [Tue, 26 Jul 2022 11:04:54 +0000 (13:04 +0200)]
ref #10096 fix placement status and handle missing status as null (not "included")

23 months agoref #10096 add placement status to cdmlight export as string
Andreas Müller [Tue, 26 Jul 2022 11:02:31 +0000 (13:02 +0200)]
ref #10096 add placement status to cdmlight export as string

23 months agoref #10096 add excluded only to cdmlight export
Andreas Müller [Tue, 26 Jul 2022 10:59:27 +0000 (12:59 +0200)]
ref #10096 add excluded only to cdmlight export

23 months agoref #10096 adapt cdmlight to new taxon node status and rename status notes to placeme...
Andreas Müller [Tue, 26 Jul 2022 10:56:04 +0000 (12:56 +0200)]
ref #10096 adapt cdmlight to new taxon node status and rename status notes to placement notes

23 months agoref #10096 add new taxon node status to TaxonNodeStatus and TaxonNode getters
Andreas Müller [Tue, 26 Jul 2022 10:55:20 +0000 (12:55 +0200)]
ref #10096 add new taxon node status to TaxonNodeStatus and TaxonNode getters

23 months agojavadoc and cleanup
Andreas Müller [Tue, 26 Jul 2022 09:45:38 +0000 (11:45 +0200)]
javadoc and cleanup

23 months agoref #9359 finally revert JavaAPIforKml again
Andreas Müller [Mon, 25 Jul 2022 22:19:20 +0000 (00:19 +0200)]
ref #9359 finally revert JavaAPIforKml again

23 months agoref #9359 revert JavaAPIforKml again
Andreas Müller [Mon, 25 Jul 2022 21:39:57 +0000 (23:39 +0200)]
ref #9359 revert JavaAPIforKml again

23 months agoref #9359 revert upgrading of JavaAPIforKml
Andreas Müller [Mon, 25 Jul 2022 20:46:22 +0000 (22:46 +0200)]
ref #9359 revert upgrading of JavaAPIforKml

23 months agoref #9359 try to upgrade JavaAPIforKml to version 3.0.1 from uk.m0nom
Andreas Müller [Mon, 25 Jul 2022 17:21:50 +0000 (19:21 +0200)]
ref #9359 try to upgrade JavaAPIforKml to version 3.0.1 from uk.m0nom

23 months agocleanup and javadoc
Andreas Müller [Mon, 25 Jul 2022 13:41:26 +0000 (15:41 +0200)]
cleanup and javadoc

23 months agoadapt remote-webapp update path
Andreas Müller [Fri, 22 Jul 2022 21:40:38 +0000 (23:40 +0200)]
adapt remote-webapp update path

23 months agoadapt testH2 in remote-webapp
Andreas Müller [Fri, 22 Jul 2022 21:36:59 +0000 (23:36 +0200)]
adapt testH2 in remote-webapp

23 months agominor
Andreas Müller [Fri, 22 Jul 2022 21:31:38 +0000 (23:31 +0200)]
minor

23 months agoref #9785 fix SimpleSchemaUpdaterStep for error recovering
Andreas Müller [Fri, 22 Jul 2022 20:45:53 +0000 (22:45 +0200)]
ref #9785 fix SimpleSchemaUpdaterStep for error recovering

23 months agojavadoc
Andreas Müller [Fri, 22 Jul 2022 20:22:51 +0000 (22:22 +0200)]
javadoc

23 months agoref #10075, ref #9908 adapt test sql for OriginalSourceBase.accessed and Credits...
Andreas Müller [Fri, 22 Jul 2022 20:20:18 +0000 (22:20 +0200)]
ref #10075, ref #9908 adapt test sql for OriginalSourceBase.accessed and Credits.timePeriod

23 months agoref #10057 fix equalsShallowCompare in OriginalSourceBase
Andreas Müller [Fri, 22 Jul 2022 20:18:48 +0000 (22:18 +0200)]
ref #10057 fix equalsShallowCompare in OriginalSourceBase

23 months agoref #10057 fix isEmpty in OriginalSourceBase
Andreas Müller [Fri, 22 Jul 2022 18:23:50 +0000 (20:23 +0200)]
ref #10057 fix isEmpty in OriginalSourceBase

23 months agoupdate TestModelUpdater
Andreas Müller [Fri, 22 Jul 2022 18:02:15 +0000 (20:02 +0200)]
update TestModelUpdater

23 months agoref #9785 fix update script for measurement unit_ids
Andreas Müller [Fri, 22 Jul 2022 18:01:53 +0000 (20:01 +0200)]
ref #9785 fix update script for measurement unit_ids

23 months agocleanup
Andreas Müller [Fri, 22 Jul 2022 18:00:59 +0000 (20:00 +0200)]
cleanup

23 months agoref #10097 add columnNameChanger for originalNameString to update script
Andreas Müller [Fri, 22 Jul 2022 18:00:04 +0000 (20:00 +0200)]
ref #10097 add columnNameChanger for originalNameString to update script

23 months agomove CdmUpdater to new model version
Andreas Müller [Fri, 22 Jul 2022 17:58:50 +0000 (19:58 +0200)]
move CdmUpdater to new model version

23 months agoref #10057 add accessed field to OriginalSourceBase (cont., fullDataGenerator)
Andreas Müller [Fri, 22 Jul 2022 17:56:50 +0000 (19:56 +0200)]
ref #10057 add accessed field to OriginalSourceBase (cont., fullDataGenerator)

23 months agoref #9908 additional changes for Credit.timePeriod
Andreas Müller [Fri, 22 Jul 2022 17:53:43 +0000 (19:53 +0200)]
ref #9908 additional changes for Credit.timePeriod

23 months agocleanup
Andreas Müller [Fri, 22 Jul 2022 16:31:07 +0000 (18:31 +0200)]
cleanup

23 months agoref #10057 add accessed field to OriginalSourceBase (cont., adapt clone, equals and...
Andreas Müller [Fri, 22 Jul 2022 16:29:56 +0000 (18:29 +0200)]
ref #10057 add accessed field to OriginalSourceBase (cont., adapt clone, equals and isEmpty)

23 months agoref #9908 add timePeriod to Credit
Andreas Müller [Fri, 22 Jul 2022 16:26:08 +0000 (18:26 +0200)]
ref #9908 add timePeriod to Credit

23 months agofix #9785 Update script for missing measurement unit_ids (matrix)
Andreas Müller [Fri, 22 Jul 2022 15:44:22 +0000 (17:44 +0200)]
fix #9785 Update script for missing measurement unit_ids (matrix)

23 months agofix #9830 update México Distrito Federal label (add accent)
Andreas Müller [Fri, 22 Jul 2022 15:11:54 +0000 (17:11 +0200)]
fix #9830 update México Distrito Federal label (add accent)

23 months agoref #9901 remove Media_RightsInfo.rights_id index
Andreas Müller [Fri, 22 Jul 2022 15:10:50 +0000 (17:10 +0200)]
ref #9901 remove Media_RightsInfo.rights_id index

23 months agoref #10097 adapt dataset.dtd (was incorrect before model change already)
Andreas Müller [Fri, 22 Jul 2022 14:54:29 +0000 (16:54 +0200)]
ref #10097 adapt dataset.dtd (was incorrect before model change already)

23 months agoref #10057 add accessed field to OriginalSourceBase
Andreas Müller [Fri, 22 Jul 2022 14:35:26 +0000 (16:35 +0200)]
ref #10057 add accessed field to OriginalSourceBase

23 months agoref #10097 change originalNameString to originalInfo in cdmlib
Andreas Müller [Fri, 22 Jul 2022 13:29:02 +0000 (15:29 +0200)]
ref #10097 change originalNameString to originalInfo in cdmlib

23 months agoref #10083 update script for blocking reverse label and schema updater for v5.32
Andreas Müller [Fri, 22 Jul 2022 12:50:23 +0000 (14:50 +0200)]
ref #10083 update script for blocking reverse label and schema updater for v5.32

23 months agominor
Andreas Müller [Fri, 22 Jul 2022 21:03:08 +0000 (23:03 +0200)]
minor

23 months agocleanup
Andreas Müller [Fri, 22 Jul 2022 14:37:11 +0000 (16:37 +0200)]
cleanup

23 months agofix log4j.xml
Andreas Müller [Fri, 22 Jul 2022 12:50:56 +0000 (14:50 +0200)]
fix log4j.xml

23 months agocleanup and javadoc
Andreas Müller [Fri, 22 Jul 2022 12:05:03 +0000 (14:05 +0200)]
cleanup and javadoc

23 months agoref #10072 new methods for logging with deviating levels and reduce using of setLevel...
Andreas Müller [Fri, 22 Jul 2022 12:04:25 +0000 (14:04 +0200)]
ref #10072 new methods for logging with deviating levels and reduce using of setLevel in production code

23 months agoref #9359, ref 10095 try to remove xpp3 from cdmlib
Andreas Müller [Thu, 21 Jul 2022 13:57:26 +0000 (15:57 +0200)]
ref #9359, ref 10095 try to remove xpp3 from cdmlib

23 months agoref #9359 re-add javax.el-api as it is still needed hibernate-validation
Andreas Müller [Thu, 21 Jul 2022 13:56:49 +0000 (15:56 +0200)]
ref #9359 re-add javax.el-api as it is still needed hibernate-validation

23 months agocleanup
Andreas Müller [Thu, 21 Jul 2022 12:48:41 +0000 (14:48 +0200)]
cleanup

23 months agoref #10072, ref #9359, ref 10095 remove slf4j-nop from cdmlib
Andreas Müller [Thu, 21 Jul 2022 12:48:21 +0000 (14:48 +0200)]
ref #10072, ref #9359, ref 10095 remove slf4j-nop from cdmlib

23 months agoref #10072 adapt integration test parameter name for log4j as it seems to be incorrec...
Andreas Müller [Thu, 21 Jul 2022 12:43:36 +0000 (14:43 +0200)]
ref #10072 adapt integration test parameter name for log4j as it seems to be incorrect and switch from properties to log4j.xml there

23 months agoref #9359 javax.el-api from dependency management as it is not used anymore
Andreas Müller [Thu, 21 Jul 2022 12:41:55 +0000 (14:41 +0200)]
ref #9359 javax.el-api from dependency management as it is not used anymore

23 months agoref #10072, ref #9359 fully remove LoggingConfigurer as it is not adaptable to log4j2...
Andreas Müller [Thu, 21 Jul 2022 12:40:10 +0000 (14:40 +0200)]
ref #10072, ref #9359 fully remove LoggingConfigurer as it is not adaptable to log4j2 and not used anymore (cont.)

23 months agoref #10072, ref #9359 fully remove LoggingConfigurer as it is not adaptable to log4j2...
Andreas Müller [Thu, 21 Jul 2022 12:10:32 +0000 (14:10 +0200)]
ref #10072, ref #9359 fully remove LoggingConfigurer as it is not adaptable to log4j2 and not used anymore

23 months agoref #9359 upgrade to 3.0.6 for mariadb-java-client in cdmlib
Andreas Müller [Thu, 21 Jul 2022 07:54:59 +0000 (09:54 +0200)]
ref #9359 upgrade to 3.0.6 for mariadb-java-client in cdmlib