cdmlib.git
10 years ago - fixed NPE in BioCaseQueryGenerator
Patric Plitzner [Mon, 30 Sep 2013 07:49:34 +0000 (07:49 +0000)]
 - fixed NPE in BioCaseQueryGenerator

10 years ago - added javadoc
Patric Plitzner [Mon, 30 Sep 2013 07:29:33 +0000 (07:29 +0000)]
 - added javadoc

10 years agoadd FeatureNodeService test #3757
Andreas Müller [Sat, 28 Sep 2013 01:05:52 +0000 (01:05 +0000)]
add FeatureNodeService test  #3757

10 years agohandle missing featureTree for treeNode #3757
Andreas Müller [Sat, 28 Sep 2013 01:04:56 +0000 (01:04 +0000)]
handle missing featureTree for treeNode  #3757

10 years agoadded TaxonNode order to preferences #3773
Andreas Müller [Fri, 27 Sep 2013 23:31:25 +0000 (23:31 +0000)]
added TaxonNode order to preferences  #3773

10 years agoClean up DescriptionBase (minor)
Andreas Müller [Fri, 27 Sep 2013 23:26:57 +0000 (23:26 +0000)]
Clean up DescriptionBase (minor)

10 years agocorrect handling of null abbrev label in SingleTermUpdater
Andreas Müller [Fri, 27 Sep 2013 22:37:00 +0000 (22:37 +0000)]
correct handling of null abbrev label in SingleTermUpdater

10 years agosome bugfixes for the update script (merge r19034 into trunk)
Andreas Müller [Fri, 27 Sep 2013 17:48:00 +0000 (17:48 +0000)]
some bugfixes for the update script (merge r19034 into trunk)

10 years agoreordering and changing tests for OriginalSOurceType and make second non capital...
Andreas Müller [Fri, 27 Sep 2013 17:39:52 +0000 (17:39 +0000)]
reordering and changing tests for OriginalSOurceType and make second non capital in MeasurementUnit.csv

10 years agominor
Andreas Müller [Fri, 27 Sep 2013 17:38:03 +0000 (17:38 +0000)]
minor

10 years agorestoring old findTaxaAndNames controller methods
Andreas Kohlbecker [Fri, 27 Sep 2013 13:34:19 +0000 (13:34 +0000)]
restoring old findTaxaAndNames controller methods

10 years ago - query parameters are read from wizard page
Patric Plitzner [Fri, 27 Sep 2013 12:45:30 +0000 (12:45 +0000)]
 - query parameters are read from wizard page
 - enhanced query's toString() method

10 years agoadding POST capabilities to rest service endpoint
Andreas Kohlbecker [Fri, 27 Sep 2013 09:26:13 +0000 (09:26 +0000)]
adding POST capabilities to rest service endpoint

10 years agofurher improvement to the TitleAndNameCacheAutoInitializer
Andreas Kohlbecker [Fri, 27 Sep 2013 09:26:10 +0000 (09:26 +0000)]
furher improvement to the TitleAndNameCacheAutoInitializer

10 years agofix missing taxon.titleCache length ->800 in update script
Andreas Müller [Fri, 27 Sep 2013 09:10:01 +0000 (09:10 +0000)]
fix missing taxon.titleCache length ->800 in update script

10 years agothere is a class now, to do mediawiki export.method exportFromFile does not work...
s.buers [Thu, 26 Sep 2013 22:24:14 +0000 (22:24 +0000)]
there is a class now, to do mediawiki export.method exportFromFile does not work proper. images have to be imported

10 years agothere is a class now, to do mediawiki export.method exportFromFile does not work...
s.buers [Thu, 26 Sep 2013 22:20:15 +0000 (22:20 +0000)]
there is a class now, to do mediawiki export.method exportFromFile does not work proper. images have to be imported

10 years agominor updates to updater
Andreas Müller [Thu, 26 Sep 2013 16:38:16 +0000 (16:38 +0000)]
minor updates to updater

10 years agopreliminary fix for ICBN bug #3658
Andreas Müller [Thu, 26 Sep 2013 16:37:43 +0000 (16:37 +0000)]
preliminary fix for ICBN bug  #3658

10 years agosome bugfixes for update script
Andreas Müller [Thu, 26 Sep 2013 16:24:12 +0000 (16:24 +0000)]
some bugfixes for update script

10 years agoimproving the TitleCacheAutoInitializer and turning it into a TitleAndNameCacheAutoIn...
Andreas Kohlbecker [Thu, 26 Sep 2013 15:45:49 +0000 (15:45 +0000)]
improving the TitleCacheAutoInitializer and turning it into a TitleAndNameCacheAutoInitializer

10 years agomoving all beaninitializer classes to new package 'eu.etaxonomy.cdm.persistence.dao...
Andreas Kohlbecker [Thu, 26 Sep 2013 15:45:44 +0000 (15:45 +0000)]
moving all beaninitializer classes to new package 'eu.etaxonomy.cdm.persistence.dao.initializer'

10 years agorefactoring MatchMode class
Andreas Kohlbecker [Thu, 26 Sep 2013 12:50:08 +0000 (12:50 +0000)]
refactoring MatchMode class

10 years agotodo comment regarding #2432 ([E+M][Portal] Implement search for multiple areas)
Andreas Kohlbecker [Thu, 26 Sep 2013 12:50:06 +0000 (12:50 +0000)]
todo comment regarding #2432 ([E+M][Portal] Implement search for multiple areas)

10 years agousing the recomendet requestPathAndQuery() for logging HTTP requests in controllers
Andreas Kohlbecker [Thu, 26 Sep 2013 12:50:03 +0000 (12:50 +0000)]
using the recomendet requestPathAndQuery() for logging HTTP requests in controllers

10 years agousing the new search method in the controlers and fixing a bug with missing grouping_...
Andreas Kohlbecker [Thu, 26 Sep 2013 12:50:01 +0000 (12:50 +0000)]
using the new search method in the controlers and fixing a bug with missing grouping_by field

10 years ago - fixed BioCASE query XML
Patric Plitzner [Thu, 26 Sep 2013 07:08:02 +0000 (07:08 +0000)]
 - fixed BioCASE query XML

10 years agoreintegrate cdm-3.3 branch into trunk
Andreas Müller [Wed, 25 Sep 2013 13:21:31 +0000 (13:21 +0000)]
reintegrate cdm-3.3 branch into trunk

10 years agominor
Andreas Müller [Wed, 25 Sep 2013 13:14:14 +0000 (13:14 +0000)]
minor

10 years agochange version of parent pom -> 3.3.0
Andreas Müller [Wed, 25 Sep 2013 13:13:25 +0000 (13:13 +0000)]
change version of parent pom -> 3.3.0

10 years agochange version ->3.3.0, move CdmMetaData, change schema version -> 20130924, fix...
Andreas Müller [Wed, 25 Sep 2013 13:12:30 +0000 (13:12 +0000)]
change version ->3.3.0, move CdmMetaData, change schema version -> 20130924, fix TaxonServiceSearch test, update update-script

10 years ago - added hashCode(), equals(), and toString() method to BioCaseQuery
Patric Plitzner [Wed, 25 Sep 2013 11:38:31 +0000 (11:38 +0000)]
 - added hashCode(), equals(), and toString() method to BioCaseQuery

10 years agomerge trunk into cdmlib v3.3 branch
Andreas Müller [Wed, 25 Sep 2013 11:37:12 +0000 (11:37 +0000)]
merge trunk into cdmlib v3.3 branch

10 years agoremove old TermsDataSet
Andreas Müller [Wed, 25 Sep 2013 11:34:05 +0000 (11:34 +0000)]
remove old TermsDataSet

10 years agomerge trunk into cdmlib v3.3 branch
Andreas Müller [Wed, 25 Sep 2013 11:28:14 +0000 (11:28 +0000)]
merge trunk into cdmlib v3.3 branch

10 years agocleaning up
Andreas Kohlbecker [Wed, 25 Sep 2013 11:15:36 +0000 (11:15 +0000)]
cleaning up

10 years agoadding missing type restriction for common names
Andreas Kohlbecker [Wed, 25 Sep 2013 11:14:54 +0000 (11:14 +0000)]
adding missing type restriction for common names

10 years agocomment automated writing of test dataset
Andreas Müller [Wed, 25 Sep 2013 10:44:36 +0000 (10:44 +0000)]
comment automated writing of test dataset

10 years agominor
Andreas Müller [Wed, 25 Sep 2013 10:42:30 +0000 (10:42 +0000)]
minor

10 years agofixing invalid test data
Andreas Kohlbecker [Wed, 25 Sep 2013 09:38:07 +0000 (09:38 +0000)]
fixing invalid test data

10 years agocommenting potential bug, see #3728 (DescriptionListPortalController.getDescriptionE...
Andreas Kohlbecker [Wed, 25 Sep 2013 09:07:51 +0000 (09:07 +0000)]
commenting potential bug, see  #3728 (DescriptionListPortalController.getDescriptionElementsForTaxon() seems to be using inapproptiate init strategy)

10 years agodocumentation
Andreas Kohlbecker [Wed, 25 Sep 2013 09:07:49 +0000 (09:07 +0000)]
documentation

10 years agocommenting out non working part of test, see #3730 (Taxon.removeTaxonRelation()...
Andreas Kohlbecker [Wed, 25 Sep 2013 09:07:46 +0000 (09:07 +0000)]
commenting out non working part of test, see  #3730 (Taxon.removeTaxonRelation() raises error on update)

10 years agoall search tests running successful
Andreas Kohlbecker [Wed, 25 Sep 2013 09:07:44 +0000 (09:07 +0000)]
all search tests running successful

10 years agoimplemnting TaxonRelationshipClassBridge to also allow filtering misapplications...
Andreas Kohlbecker [Wed, 25 Sep 2013 09:07:40 +0000 (09:07 +0000)]
implemnting TaxonRelationshipClassBridge to also allow filtering misapplications by distribution, but run into a potential java bug which is really weired the solution i found to circumvent it is documented in TaxonServiceImpl.java

10 years agoTODO comment to the ClassInfoBridge
Andreas Kohlbecker [Wed, 25 Sep 2013 09:07:35 +0000 (09:07 +0000)]
TODO comment to  the ClassInfoBridge

10 years agoanother TODO comments regarding the AcceptedTaxonBridge
Andreas Kohlbecker [Wed, 25 Sep 2013 09:07:29 +0000 (09:07 +0000)]
another TODO comments regarding the AcceptedTaxonBridge

10 years agoanother TODO comments regarding the AcceptedTaxonBridge
Andreas Kohlbecker [Wed, 25 Sep 2013 09:07:26 +0000 (09:07 +0000)]
another TODO comments regarding the AcceptedTaxonBridge

10 years agosearch by synonym also working with distrubution filter. TODO comments to the Accepte...
Andreas Kohlbecker [Wed, 25 Sep 2013 09:07:24 +0000 (09:07 +0000)]
search by synonym also working with distrubution filter. TODO comments to the AcceptedTaxonBridge

10 years agoadding missing @Override
Andreas Kohlbecker [Wed, 25 Sep 2013 09:07:19 +0000 (09:07 +0000)]
adding missing @Override

10 years agochanging test data a little bit
Andreas Kohlbecker [Wed, 25 Sep 2013 09:07:05 +0000 (09:07 +0000)]
changing test data a little bit

10 years agodistribution filter now working for taxon search by common names. commit includes...
Andreas Kohlbecker [Wed, 25 Sep 2013 09:07:00 +0000 (09:07 +0000)]
distribution filter now working for taxon search by common names. commit includes results from research on best way to imnplement this

10 years agorefactoring for a lucene cross index search
Andreas Kohlbecker [Wed, 25 Sep 2013 09:06:56 +0000 (09:06 +0000)]
refactoring for a lucene cross index search

10 years agofurther tests show that cross index search is not working, commenting out these tests...
Andreas Kohlbecker [Wed, 25 Sep 2013 09:06:52 +0000 (09:06 +0000)]
further tests show that cross index search is not working, commenting out these tests for refactoring

10 years agoturning off spell check index purging
Andreas Kohlbecker [Wed, 25 Sep 2013 09:06:48 +0000 (09:06 +0000)]
turning off spell check index purging

10 years agofiltering of lucene searches by distributions basically implemented, needs to be...
Andreas Kohlbecker [Wed, 25 Sep 2013 09:06:43 +0000 (09:06 +0000)]
filtering of lucene searches by distributions basically implemented, needs to be improved though

10 years ago(no commit message)
l.morris [Thu, 19 Sep 2013 16:30:52 +0000 (16:30 +0000)]

10 years agoAdded method to upload transformed xml to mediwiki
l.morris [Thu, 19 Sep 2013 16:30:35 +0000 (16:30 +0000)]
Added method to upload transformed xml to mediwiki

10 years agosome merging with Lorna
s.buers [Thu, 19 Sep 2013 16:25:11 +0000 (16:25 +0000)]
some merging with Lorna

10 years agoAdded new classes to import mediwiki files uwing Mediwiki API.
l.morris [Thu, 19 Sep 2013 15:50:37 +0000 (15:50 +0000)]
Added new classes to import mediwiki files uwing Mediwiki API.

10 years ago - merged changes from campanula branch
Patric Plitzner [Thu, 19 Sep 2013 13:46:38 +0000 (13:46 +0000)]
 - merged changes from campanula branch
   - added BioCASE query support to cdmlib-ext

10 years agofix ABCD import
Andreas Müller [Thu, 19 Sep 2013 13:33:31 +0000 (13:33 +0000)]
fix ABCD import

10 years agominor
Andreas Müller [Thu, 19 Sep 2013 13:31:34 +0000 (13:31 +0000)]
minor

10 years agomoving preferences into new package and some minor changes
Andreas Müller [Thu, 19 Sep 2013 13:23:44 +0000 (13:23 +0000)]
moving preferences into new package and some minor changes

10 years agominor
Andreas Müller [Thu, 19 Sep 2013 11:36:35 +0000 (11:36 +0000)]
minor

10 years agorefactor Abcd import so that save can be handled separately, not yet complete
Andreas Müller [Thu, 19 Sep 2013 11:34:01 +0000 (11:34 +0000)]
refactor Abcd import so that save can be handled separately, not yet complete

10 years agochange cdmApp type in ioConfig to interface #3726
Andreas Müller [Thu, 19 Sep 2013 11:32:58 +0000 (11:32 +0000)]
change cdmApp type in ioConfig to interface  #3726

10 years agominor
Andreas Müller [Thu, 19 Sep 2013 11:31:34 +0000 (11:31 +0000)]
minor

10 years agojust commit to be able to revert locally
s.buers [Thu, 19 Sep 2013 10:10:54 +0000 (10:10 +0000)]
just commit to be able to revert locally

10 years agocreated local tmp folder to store the mediawiki xml source file
s.buers [Wed, 18 Sep 2013 13:12:11 +0000 (13:12 +0000)]
created local tmp folder to store the mediawiki xml source file

10 years agomerge-update from trunk
Patric Plitzner [Wed, 18 Sep 2013 13:11:50 +0000 (13:11 +0000)]
merge-update from trunk

10 years agocommit after an other merge from trunk
s.buers [Wed, 18 Sep 2013 12:46:35 +0000 (12:46 +0000)]
commit after an other merge from trunk

10 years agoAdded cichorieae to test XML output in PublisherTest
l.morris [Wed, 18 Sep 2013 12:43:39 +0000 (12:43 +0000)]
Added cichorieae to test XML output in PublisherTest

10 years agoAdd getReferences method so references now harvested in the XML output for print...
l.morris [Wed, 18 Sep 2013 12:40:45 +0000 (12:40 +0000)]
Add getReferences method so references now harvested in the XML output for print publishing.

10 years agocommit after merging from trunk
s.buers [Wed, 18 Sep 2013 10:21:07 +0000 (10:21 +0000)]
commit after merging from trunk

10 years agomerge trunk into v3.3 branch
Andreas Müller [Tue, 17 Sep 2013 12:56:40 +0000 (12:56 +0000)]
merge trunk into v3.3 branch

10 years agochange parent pom version in 3.3
Andreas Müller [Tue, 17 Sep 2013 08:42:56 +0000 (08:42 +0000)]
change parent pom version in 3.3

10 years agominor
Andreas Müller [Tue, 17 Sep 2013 08:41:34 +0000 (08:41 +0000)]
minor

10 years agosome more changes to CdmPreferences including key size
Andreas Müller [Tue, 17 Sep 2013 08:40:24 +0000 (08:40 +0000)]
some more changes to CdmPreferences including key size

10 years agoSome more changes to Preference service
Andreas Müller [Tue, 17 Sep 2013 08:37:27 +0000 (08:37 +0000)]
Some more changes to Preference service

10 years agojust changed paths to relative
s.buers [Mon, 16 Sep 2013 14:04:18 +0000 (14:04 +0000)]
just changed paths to relative

10 years agosome better implementation for CdmPreferences dao including some tests #3555
Andreas Müller [Mon, 16 Sep 2013 12:22:32 +0000 (12:22 +0000)]
some better implementation for CdmPreferences dao including some tests #3555

10 years agoAdded a new output module for print publishing of Mediawiki files.
l.morris [Mon, 16 Sep 2013 12:06:59 +0000 (12:06 +0000)]
Added a new output module for print publishing of Mediawiki files.

10 years agominor
Andreas Müller [Mon, 16 Sep 2013 11:13:14 +0000 (11:13 +0000)]
minor

10 years agomove AbstractStringComparator to cdmlib-commons and refactor a bit
Andreas Müller [Mon, 16 Sep 2013 10:58:54 +0000 (10:58 +0000)]
move AbstractStringComparator to cdmlib-commons and refactor a bit

10 years agoexchange comments on treeNodes for issues related to OrderColumn (#3722)
Andreas Müller [Mon, 16 Sep 2013 09:57:35 +0000 (09:57 +0000)]
exchange comments on treeNodes for issues related to OrderColumn (#3722)

10 years agoremoving problematic ids from result data set
Andreas Kohlbecker [Fri, 13 Sep 2013 14:10:45 +0000 (14:10 +0000)]
removing problematic ids from result data set

10 years agosearch for misapplied name implemented in findTaxaAndNamesByFullText() also adapting...
Andreas Kohlbecker [Fri, 13 Sep 2013 14:10:42 +0000 (14:10 +0000)]
search for misapplied name implemented in findTaxaAndNamesByFullText() also adapting testdata and fixing a big bunch of problems with grouping and other freetext search features

10 years agoadding dependency for lucene-join
Andreas Kohlbecker [Fri, 13 Sep 2013 14:10:36 +0000 (14:10 +0000)]
adding dependency for lucene-join

10 years agocleaning up
Andreas Kohlbecker [Fri, 13 Sep 2013 14:10:34 +0000 (14:10 +0000)]
cleaning up

10 years agoadapting test data to changes in previous commit
Andreas Kohlbecker [Fri, 13 Sep 2013 14:10:32 +0000 (14:10 +0000)]
adapting test data to changes in previous commit

10 years agoproblem of termloading which was overriding hibernate_sequences in testdatasets solved
Andreas Kohlbecker [Fri, 13 Sep 2013 14:10:30 +0000 (14:10 +0000)]
problem of termloading which was overriding hibernate_sequences in testdatasets solved

10 years agofirst implementation towards a full functional TaxonService.findTaxaAndNamesByFullTex...
Andreas Kohlbecker [Fri, 13 Sep 2013 14:10:25 +0000 (14:10 +0000)]
first implementation towards a full functional TaxonService.findTaxaAndNamesByFullText() 2

10 years agofirst implementation towards a full functional TaxonService.findTaxaAndNamesByFullText()
Andreas Kohlbecker [Fri, 13 Sep 2013 14:10:22 +0000 (14:10 +0000)]
first implementation towards a full functional TaxonService.findTaxaAndNamesByFullText()

10 years agoadding method documentation
Andreas Kohlbecker [Fri, 13 Sep 2013 14:10:15 +0000 (14:10 +0000)]
adding method documentation

10 years agojavadoc for amplification
Andreas Müller [Fri, 13 Sep 2013 12:06:52 +0000 (12:06 +0000)]
javadoc for amplification

10 years agosome bugfixes for TaxonNode sorting #3508
Andreas Müller [Fri, 13 Sep 2013 11:30:41 +0000 (11:30 +0000)]
some bugfixes for TaxonNode sorting #3508

10 years agominor
Andreas Müller [Thu, 12 Sep 2013 19:30:43 +0000 (19:30 +0000)]
minor

10 years agominor
Andreas Müller [Thu, 12 Sep 2013 19:30:07 +0000 (19:30 +0000)]
minor

10 years agopartial implementation of CDM preferences (dao, service and enums): #3555
Andreas Müller [Thu, 12 Sep 2013 12:55:33 +0000 (12:55 +0000)]
partial implementation of CDM preferences (dao, service and enums): #3555