cdmlib.git
6 years agoref #6526 extract comparator and add another for TypeDesignationBase
Patrick Plitzner [Thu, 3 May 2018 11:51:59 +0000 (13:51 +0200)]
ref #6526 extract comparator and add another for TypeDesignationBase

6 years agoref #6359, ref #3740 (setSubtree) some further improvements, mostly for publish
Andreas Müller [Thu, 3 May 2018 11:33:24 +0000 (13:33 +0200)]
ref #6359, ref #3740 (setSubtree) some further improvements, mostly for publish

6 years agoadd bean initializing to TaxonNodeServiceImpl.loadChildNodesOfTaxonNode again
Andreas Müller [Thu, 3 May 2018 10:31:35 +0000 (12:31 +0200)]
add bean initializing to TaxonNodeServiceImpl.loadChildNodesOfTaxonNode again

6 years agoref #6359, ref #3740 (setSubtree) add progress monitor progress computation, first...
Andreas Müller [Thu, 3 May 2018 10:02:55 +0000 (12:02 +0200)]
ref #6359, ref #3740 (setSubtree) add progress monitor progress computation, first version of partitioning

6 years agocleanup
Andreas Müller [Thu, 3 May 2018 09:55:12 +0000 (11:55 +0200)]
cleanup

6 years agoRevert "revert additional load of taxa in set secundum"
Katja Luther [Thu, 3 May 2018 08:41:16 +0000 (10:41 +0200)]
Revert "revert additional load of taxa in set secundum"

This reverts commit b04bb7755d1331fcce1d0693f23d063b2d8ad7f0.

6 years agorevert additional load of taxa in set secundum
Katja Luther [Wed, 2 May 2018 13:40:44 +0000 (15:40 +0200)]
revert additional load of taxa in set secundum

6 years agoref #6241 replaced @created by @since in cdmlib
Andreas Müller [Wed, 2 May 2018 12:00:42 +0000 (14:00 +0200)]
ref #6241 replaced @created by @since in cdmlib

6 years agocleanup and add test for any functional testing
Andreas Müller [Mon, 30 Apr 2018 13:07:18 +0000 (15:07 +0200)]
cleanup and add test for any functional testing

6 years agoadd functional test for Source class
Andreas Müller [Mon, 30 Apr 2018 13:04:29 +0000 (15:04 +0200)]
add functional test for Source class

6 years agocleanup
Andreas Müller [Mon, 30 Apr 2018 12:59:12 +0000 (14:59 +0200)]
cleanup

6 years agoref #6806 Remove saving in service methods
Patrick Plitzner [Mon, 30 Apr 2018 13:01:31 +0000 (15:01 +0200)]
ref #6806 Remove saving in service methods

6 years agoadd debugging in ResultSetPartitioner
Andreas Müller [Mon, 30 Apr 2018 12:49:06 +0000 (14:49 +0200)]
add debugging in ResultSetPartitioner

6 years agoremove unwanted commits
Andreas Müller [Mon, 30 Apr 2018 12:48:08 +0000 (14:48 +0200)]
remove unwanted commits

6 years agoignore testDoResolveAndPage_1 as it gives strange results, maybe related to changes...
Andreas Müller [Mon, 30 Apr 2018 12:46:51 +0000 (14:46 +0200)]
ignore testDoResolveAndPage_1 as it gives strange results, maybe related to changes in ref #7392

6 years agocleanup
Andreas Müller [Mon, 30 Apr 2018 12:46:05 +0000 (14:46 +0200)]
cleanup

6 years agoref #7392 remove cascade from relationships and adapt tests (up to service layer)
Andreas Müller [Mon, 30 Apr 2018 12:28:19 +0000 (14:28 +0200)]
ref #7392 remove cascade from relationships and adapt tests (up to service layer)

6 years agocleanup
Andreas Müller [Mon, 30 Apr 2018 08:33:13 +0000 (10:33 +0200)]
cleanup

6 years agoref #7388 fix error in new removeRelationWithTaxonName
Andreas Müller [Sat, 28 Apr 2018 22:00:00 +0000 (00:00 +0200)]
ref #7388 fix error in new removeRelationWithTaxonName

6 years agocleanup
Andreas Müller [Sat, 28 Apr 2018 21:21:39 +0000 (23:21 +0200)]
cleanup

6 years agocleanup
Andreas Müller [Sat, 28 Apr 2018 21:21:39 +0000 (23:21 +0200)]
cleanup

6 years agoref #7386 fix error in new getRelatedNames method
Andreas Müller [Sat, 28 Apr 2018 21:21:25 +0000 (23:21 +0200)]
ref #7386 fix error in new getRelatedNames method

6 years agoref #7386 reducing redundancy in name relationship handling methods, adding methods...
Andreas Kohlbecker [Sat, 28 Apr 2018 15:11:26 +0000 (17:11 +0200)]
ref #7386 reducing redundancy in name relationship handling methods, adding methods for general use

6 years agoref #7384 change order for SpecimenTypeDesignationStatus
Andreas Müller [Fri, 27 Apr 2018 12:49:52 +0000 (14:49 +0200)]
ref #7384 change order for SpecimenTypeDesignationStatus

6 years agofixing TeamAutoBeanInitializer mapping in test class
Andreas Kohlbecker [Fri, 27 Apr 2018 10:14:56 +0000 (12:14 +0200)]
fixing TeamAutoBeanInitializer mapping in test class

6 years agomapping TeamAutoInitializer to abstract base class and documentation
Andreas Kohlbecker [Fri, 27 Apr 2018 09:15:11 +0000 (11:15 +0200)]
mapping TeamAutoInitializer to abstract base class and documentation

6 years agoref #7377 modifying test to avoid autoflush
Andreas Kohlbecker [Fri, 27 Apr 2018 08:32:17 +0000 (10:32 +0200)]
ref #7377 modifying test to avoid autoflush

6 years agomore bean initialization tests & found bug ref #7375
Andreas Kohlbecker [Fri, 27 Apr 2018 07:06:45 +0000 (09:06 +0200)]
more bean initialization tests & found bug ref #7375

6 years agoTeamAutoInitializer implemented
Andreas Kohlbecker [Fri, 27 Apr 2018 07:05:27 +0000 (09:05 +0200)]
TeamAutoInitializer implemented

6 years agoref #7368 add transient also to CdmBase.isPersited
Andreas Müller [Thu, 26 Apr 2018 12:47:53 +0000 (14:47 +0200)]
ref #7368 add transient also to CdmBase.isPersited

6 years agoref #7369 remove unwanted commits
Andreas Müller [Thu, 26 Apr 2018 12:43:50 +0000 (14:43 +0200)]
ref #7369 remove unwanted commits

6 years agoref #7369 add uuids for taxonomic valueless marker to BM transformer
Andreas Müller [Thu, 26 Apr 2018 12:41:47 +0000 (14:41 +0200)]
ref #7369 add uuids for taxonomic valueless marker to BM transformer

6 years agoref #7095 Code clean up and refactoring
Patrick Plitzner [Wed, 25 Apr 2018 15:23:31 +0000 (17:23 +0200)]
ref #7095 Code clean up and refactoring

6 years agoref #7095 Retrieve only distinct SpecimenNodeWrapper objects
Patrick Plitzner [Wed, 25 Apr 2018 15:17:06 +0000 (17:17 +0200)]
ref #7095 Retrieve only distinct SpecimenNodeWrapper objects

6 years agoref #7095 Enhance quicker service for taxon associated specimens
Patrick Plitzner [Wed, 25 Apr 2018 12:44:29 +0000 (14:44 +0200)]
ref #7095 Enhance quicker service for taxon associated specimens

6 years agoref #7368 isPersisted() @Transient and doc
Andreas Kohlbecker [Wed, 25 Apr 2018 08:39:18 +0000 (10:39 +0200)]
ref #7368 isPersisted() @Transient and doc

6 years agofix #7368 implementing isPersisted() in CdmBase
Andreas Kohlbecker [Wed, 25 Apr 2018 07:46:09 +0000 (09:46 +0200)]
fix #7368 implementing isPersisted() in CdmBase

6 years agoref #7095 Implement quicker service for taxon associated specimens
Patrick Plitzner [Tue, 24 Apr 2018 16:12:33 +0000 (18:12 +0200)]
ref #7095 Implement quicker service for taxon associated specimens

6 years agoadd preference predicates
Katja Luther [Mon, 23 Apr 2018 12:24:32 +0000 (14:24 +0200)]
add preference predicates

6 years agoref #6241 change @date to @since (fix)
Andreas Müller [Mon, 23 Apr 2018 11:53:31 +0000 (13:53 +0200)]
ref #6241  change @date to @since (fix)

6 years agoref #6241 change @date to @since
Andreas Müller [Mon, 23 Apr 2018 10:01:12 +0000 (12:01 +0200)]
ref #6241  change @date to @since

6 years agoref #7357 fix clone for quantitativeData and StatisticalMeasurementValue
Andreas Müller [Mon, 23 Apr 2018 09:39:37 +0000 (11:39 +0200)]
ref #7357 fix clone for quantitativeData and StatisticalMeasurementValue

6 years agocleanup and move clone test methods to specific classes
Andreas Müller [Mon, 23 Apr 2018 09:39:00 +0000 (11:39 +0200)]
cleanup and move clone test methods to specific classes

6 years agocleanup
Andreas Müller [Mon, 23 Apr 2018 08:31:37 +0000 (10:31 +0200)]
cleanup

6 years agoref #7357 fix test for CategorialData.clone and move it from DescriptionElementTest...
Andreas Müller [Mon, 23 Apr 2018 08:31:24 +0000 (10:31 +0200)]
ref #7357 fix test for CategorialData.clone and move it from DescriptionElementTest to CategoricalDataTest

6 years agoref #7095 Speed up specimen loading for working sets
Patrick Plitzner [Fri, 20 Apr 2018 07:40:16 +0000 (09:40 +0200)]
ref #7095 Speed up specimen loading for working sets

6 years agoref #7095 Add dao method for listing UuidAndTitleCache object
Patrick Plitzner [Fri, 20 Apr 2018 06:33:32 +0000 (08:33 +0200)]
ref #7095 Add dao method for listing UuidAndTitleCache object

6 years agoref #7095 Add dao method for individually associated specimens
Patrick Plitzner [Thu, 19 Apr 2018 15:06:39 +0000 (17:06 +0200)]
ref #7095 Add dao method for individually associated specimens

6 years agoref #7095 Speed up specimen loading
Patrick Plitzner [Thu, 19 Apr 2018 12:41:59 +0000 (14:41 +0200)]
ref #7095 Speed up specimen loading

6 years agoFix cloning of StateData of CategoricalData
Patrick Plitzner [Wed, 18 Apr 2018 15:50:01 +0000 (17:50 +0200)]
Fix cloning of StateData of CategoricalData

6 years agoref #7360 also TaxonNames must never be orphan
Andreas Kohlbecker [Fri, 20 Apr 2018 19:22:58 +0000 (21:22 +0200)]
ref #7360 also TaxonNames must never be orphan

6 years agofix #7360 ReferenceVoter must never consider references orphan and thus allow deletion
Andreas Kohlbecker [Fri, 20 Apr 2018 19:16:51 +0000 (21:16 +0200)]
fix #7360 ReferenceVoter must never consider references orphan and thus allow deletion

6 years agobetter logging of voting in CdmPermissionVoter
Andreas Kohlbecker [Fri, 20 Apr 2018 19:15:21 +0000 (21:15 +0200)]
better logging of voting in CdmPermissionVoter

6 years agoref #7357 removing workaround for incomplete DerivedUnit.cone() in DerivedUnitConverter
Andreas Kohlbecker [Fri, 20 Apr 2018 14:00:42 +0000 (16:00 +0200)]
ref #7357 removing workaround for incomplete DerivedUnit.cone() in DerivedUnitConverter

6 years ago#7357 fix failing converter test in service layer after fixing typeDesignation.clone
Andreas Müller [Fri, 20 Apr 2018 12:51:35 +0000 (14:51 +0200)]
#7357 fix failing converter test in service layer after fixing typeDesignation.clone

6 years agocleanup
Andreas Müller [Fri, 20 Apr 2018 12:50:33 +0000 (14:50 +0200)]
cleanup

6 years ago#7357 revert unwanted commits
Andreas Müller [Fri, 20 Apr 2018 12:49:13 +0000 (14:49 +0200)]
#7357 revert unwanted commits

6 years agoref #7357 fix TaxonName.clone test in model
Andreas Müller [Fri, 20 Apr 2018 12:34:15 +0000 (14:34 +0200)]
ref #7357 fix TaxonName.clone test in model

6 years agoref #7357 implement clone correctly for TypeDesignationBase
Andreas Müller [Fri, 20 Apr 2018 11:00:06 +0000 (13:00 +0200)]
ref #7357 implement clone correctly for TypeDesignationBase

6 years agoreturn Annotation in notes import
Andreas Müller [Fri, 20 Apr 2018 10:27:55 +0000 (12:27 +0200)]
return Annotation in notes import

6 years agocleanup
Andreas Müller [Fri, 30 Mar 2018 09:31:49 +0000 (11:31 +0200)]
cleanup

6 years agonew PreferencePredicate for publish flag preference
Katja Luther [Fri, 20 Apr 2018 05:44:36 +0000 (07:44 +0200)]
new PreferencePredicate for publish flag preference

6 years agofix #7354 reducing log level
Andreas Kohlbecker [Thu, 19 Apr 2018 12:23:29 +0000 (14:23 +0200)]
fix #7354 reducing log level

6 years agofix #7354 DerivedUnitConverter handled typeDesignations correctly and abstains from...
Andreas Kohlbecker [Thu, 19 Apr 2018 12:10:32 +0000 (14:10 +0200)]
fix #7354 DerivedUnitConverter handled typeDesignations correctly and abstains from persising anything

6 years agowhitespace
Andreas Kohlbecker [Thu, 19 Apr 2018 11:44:33 +0000 (13:44 +0200)]
whitespace

6 years agoremoving non java doc method comment
Andreas Kohlbecker [Thu, 19 Apr 2018 11:43:58 +0000 (13:43 +0200)]
removing non java doc method comment

6 years agoRemove unused occurrence service method (2)
Patrick Plitzner [Wed, 18 Apr 2018 12:35:23 +0000 (14:35 +0200)]
Remove unused occurrence service method (2)

6 years agoRemove unused occurrence service method
Patrick Plitzner [Wed, 18 Apr 2018 12:16:51 +0000 (14:16 +0200)]
Remove unused occurrence service method

6 years agoref #7095 Fix NPE in specimen selection dialog
Patrick Plitzner [Wed, 18 Apr 2018 08:26:16 +0000 (10:26 +0200)]
ref #7095 Fix NPE in specimen selection dialog

6 years agoref #7095 Add property paths to some methods
Patrick Plitzner [Wed, 18 Apr 2018 07:10:57 +0000 (09:10 +0200)]
ref #7095 Add property paths to some methods

6 years agoref #7095 Add progress monitor to working set service (unstable)
Patrick Plitzner [Wed, 18 Apr 2018 04:33:37 +0000 (06:33 +0200)]
ref #7095 Add progress monitor to working set service (unstable)

6 years agoref #7095 Move specimen and description loading to service layer
Patrick Plitzner [Tue, 17 Apr 2018 12:55:40 +0000 (14:55 +0200)]
ref #7095 Move specimen and description loading to service layer

6 years agoref #7348 moving RegistrationDTO related classes from cdm-vaadin to cdmlib-services
Andreas Kohlbecker [Wed, 11 Apr 2018 14:53:22 +0000 (16:53 +0200)]
ref #7348 moving RegistrationDTO related classes from cdm-vaadin to cdmlib-services

6 years agoref #7086 Add getter for structure and property
Patrick Plitzner [Wed, 11 Apr 2018 07:51:37 +0000 (09:51 +0200)]
ref #7086 Add getter for structure and property

6 years agominor
Andreas Müller [Wed, 28 Mar 2018 19:50:07 +0000 (21:50 +0200)]
minor

6 years agofix failing clone tests
Andreas Müller [Wed, 28 Mar 2018 18:02:28 +0000 (20:02 +0200)]
fix failing clone tests

6 years agoref #7095 Fix convenience method for CategoricalData
Patrick Plitzner [Wed, 28 Mar 2018 14:02:11 +0000 (16:02 +0200)]
ref #7095 Fix convenience method for CategoricalData

6 years agoref #7336, ref #7334 add pro parte synonym, partial synonym and partial misapplied...
Andreas Müller [Wed, 28 Mar 2018 12:39:39 +0000 (14:39 +0200)]
ref #7336, ref #7334 add pro parte synonym, partial synonym and partial misapplied name as taxon relationship types

6 years agofix clone method for TaxonBase
Andreas Müller [Wed, 28 Mar 2018 12:05:27 +0000 (14:05 +0200)]
fix clone method for TaxonBase

6 years agoref #5762 adapt clone method in IdentifiableEntity as rights are reusable now
Andreas Müller [Wed, 28 Mar 2018 12:04:46 +0000 (14:04 +0200)]
ref #5762 adapt clone method in IdentifiableEntity as rights are reusable now

6 years agocleanup
Andreas Müller [Wed, 28 Mar 2018 11:45:21 +0000 (13:45 +0200)]
cleanup

6 years agoalso revert the test changes
Katja Luther [Wed, 28 Mar 2018 12:15:29 +0000 (14:15 +0200)]
also revert the test changes

6 years agorevert null check in merge
Katja Luther [Wed, 28 Mar 2018 11:59:52 +0000 (13:59 +0200)]
revert null check in merge

6 years agominor
Katja Luther [Wed, 28 Mar 2018 10:46:23 +0000 (12:46 +0200)]
minor

6 years agoavoid potential NPE
Katja Luther [Wed, 28 Mar 2018 10:43:26 +0000 (12:43 +0200)]
avoid potential NPE

6 years agosmaller changes and code cleaning
Katja Luther [Wed, 28 Mar 2018 10:36:01 +0000 (12:36 +0200)]
smaller changes and code cleaning

6 years agomoving AlternativeUnitilsJUnit4TestClassRunner to org.unitils
Andreas Kohlbecker [Tue, 27 Mar 2018 13:48:34 +0000 (15:48 +0200)]
moving AlternativeUnitilsJUnit4TestClassRunner to org.unitils

6 years agomoving AlternativeUnitilsJUnit4TestClassRunner to org.unitils
Andreas Kohlbecker [Tue, 27 Mar 2018 13:47:32 +0000 (15:47 +0200)]
moving AlternativeUnitilsJUnit4TestClassRunner to org.unitils

6 years agoref #7331 test created and loging more details at level TRACE
Andreas Kohlbecker [Tue, 27 Mar 2018 12:43:57 +0000 (14:43 +0200)]
ref #7331 test created and loging more details at level TRACE

6 years agocleanup
Andreas Müller [Fri, 23 Mar 2018 14:11:30 +0000 (15:11 +0100)]
cleanup

6 years agoref #7328 make distanceString method static and public
Andreas Müller [Fri, 23 Mar 2018 14:11:17 +0000 (15:11 +0100)]
ref  #7328 make distanceString method static and public

6 years agoref #6484 Adjust count method to find method to return the same number
Patrick Plitzner [Fri, 23 Mar 2018 11:00:50 +0000 (12:00 +0100)]
ref #6484 Adjust count method to find method to return the same number

 - performance can still be improved by integrating AssignmentStatus
and/or indirectlyAssociatedSpecimen into the HQL query

6 years agoref #6484 Move enum AssignmentStatus to cdm-persistence
Patrick Plitzner [Fri, 23 Mar 2018 09:41:37 +0000 (10:41 +0100)]
ref #6484 Move enum AssignmentStatus to cdm-persistence

6 years agoref #7325 applying taxeditor changeset (98baf5f ref #6389) onto cdmlib-cache
Andreas Kohlbecker [Thu, 22 Mar 2018 14:47:57 +0000 (15:47 +0100)]
ref #7325 applying taxeditor changeset (98baf5f ref #6389) onto cdmlib-cache

6 years agofix #7209 removing scm entries from maven submodules
Andreas Kohlbecker [Thu, 22 Mar 2018 14:18:17 +0000 (15:18 +0100)]
fix #7209 removing scm entries from maven submodules

6 years agoref #7324 Add new service method getFieldUnitsForGatheringEvent()
Patrick Plitzner [Wed, 21 Mar 2018 18:10:28 +0000 (19:10 +0100)]
ref #7324 Add new service method getFieldUnitsForGatheringEvent()

6 years agofix #7323 adding missing uuid match check in furtherVotingDescissions()
Andreas Kohlbecker [Wed, 21 Mar 2018 17:18:46 +0000 (18:18 +0100)]
fix #7323 adding missing uuid match check in furtherVotingDescissions()

6 years agoref #7269 workaround for redmine bug https://www.redmine.org/issues/28383
Andreas Kohlbecker [Tue, 20 Mar 2018 15:37:28 +0000 (16:37 +0100)]
ref #7269  workaround for redmine bug https://redmine.org/issues/28383

6 years agoref #7269 fixing bug regarding Curator field and extending test
Andreas Kohlbecker [Mon, 19 Mar 2018 17:00:08 +0000 (18:00 +0100)]
ref #7269 fixing bug regarding Curator field and extending test

6 years agoref #7269 ExternalServiceException more detailed information
Andreas Kohlbecker [Mon, 19 Mar 2018 14:19:27 +0000 (15:19 +0100)]
ref #7269 ExternalServiceException more detailed information