Andreas Müller [Thu, 15 May 2014 16:22:27 +0000 (16:22 +0000)]
serial Version ID for HomGroup
Andreas Müller [Thu, 15 May 2014 16:03:11 +0000 (16:03 +0000)]
handle null objects for save, saveOrUpdate and Update
Andreas Müller [Thu, 15 May 2014 11:44:12 +0000 (11:44 +0000)]
further fixes for subareas #4220
Andreas Müller [Thu, 15 May 2014 11:41:03 +0000 (11:41 +0000)]
add getKindOfUnit in import base
Andreas Müller [Thu, 15 May 2014 11:39:49 +0000 (11:39 +0000)]
better handling NewInstance in DerivedUnit
Andreas Müller [Thu, 15 May 2014 11:36:08 +0000 (11:36 +0000)]
minor
Katja Luther [Thu, 15 May 2014 10:58:01 +0000 (10:58 +0000)]
set getDescendants back to protected, remove @transient
Katja Luther [Thu, 15 May 2014 09:35:22 +0000 (09:35 +0000)]
adapt the service method loadChildNodesOfTaxonNode
with param recursive choose whether you get only the children of the node or the children of the children ...
Andreas Müller [Wed, 14 May 2014 15:38:39 +0000 (15:38 +0000)]
fix CCE in TaxonListController #4420
Cherian Mathew [Wed, 14 May 2014 09:42:53 +0000 (09:42 +0000)]
adding transient annotaion so that it is ignored in serializing
Patric Plitzner [Wed, 14 May 2014 08:08:34 +0000 (08:08 +0000)]
- made move methods session-safe by reloading the cdm entities
- enhanced/added test
Patric Plitzner [Wed, 14 May 2014 07:15:41 +0000 (07:15 +0000)]
- made move methods session-safe by reloading the cdm entities
- enhanced/added test
- made constructor of PreservationMethod protected to avoid JavaAssistEnhancementException
edit-jenkins [Tue, 13 May 2014 14:10:11 +0000 (14:10 +0000)]
[maven-release-plugin] prepare for next development iteration
edit-jenkins [Tue, 13 May 2014 14:10:08 +0000 (14:10 +0000)]
[maven-release-plugin] prepare release cdmlib-parent-3.3.4
Katja Luther [Tue, 13 May 2014 10:44:42 +0000 (10:44 +0000)]
set getDescendants() public
Katja Luther [Mon, 12 May 2014 10:52:55 +0000 (10:52 +0000)]
moved the basic implementation of isDeletable from IdentifiableServiceBase to VersionableServiceBase
Andreas Müller [Fri, 9 May 2014 13:49:00 +0000 (13:49 +0000)]
Some updates for AlgaTerra Types import
Andreas Müller [Fri, 9 May 2014 09:05:23 +0000 (09:05 +0000)]
minor
Andreas Müller [Fri, 9 May 2014 09:03:51 +0000 (09:03 +0000)]
fixing bug for missing reference type
Andreas Müller [Fri, 9 May 2014 08:24:29 +0000 (08:24 +0000)]
implement cache strategy for section references and remove generics from reference cache strategies.
Andreas Müller [Thu, 8 May 2014 09:36:52 +0000 (09:36 +0000)]
Add preliminary SectionCacheStrategy and remove generics from reference cache strategies
Cherian Mathew [Wed, 7 May 2014 08:39:54 +0000 (08:39 +0000)]
CdmSource : added null port constant
CdmPersistentDataSource : corrected url port generation
Andreas Müller [Wed, 7 May 2014 08:24:54 +0000 (08:24 +0000)]
adding map to ReferenceSystem
Andreas Müller [Wed, 7 May 2014 08:23:25 +0000 (08:23 +0000)]
adding Gazetteer to ReferenceSystem
Andreas Müller [Tue, 6 May 2014 15:47:57 +0000 (15:47 +0000)]
fixing failing ODBC test
Andreas Müller [Tue, 6 May 2014 15:45:25 +0000 (15:45 +0000)]
remove imports and javadoc
Cherian Mathew [Tue, 6 May 2014 14:25:20 +0000 (14:25 +0000)]
added setter methods for common properties
Cherian Mathew [Tue, 6 May 2014 14:23:04 +0000 (14:23 +0000)]
CdmDataSourceBase : added method to retrieve database metadata
ICdmDataSource, CdmDataSource, CdmPersistentDataSource : added getter/setter methods for cdm source properties
CdmDataSource : added a new constructor to clone from and existing ICdmDataSource
Cherian Mathew [Tue, 6 May 2014 14:19:34 +0000 (14:19 +0000)]
added method to retrieve metadata of a database
Andreas Müller [Tue, 6 May 2014 14:13:15 +0000 (14:13 +0000)]
fix failing test (specimen import)
Andreas Müller [Tue, 6 May 2014 13:49:21 +0000 (13:49 +0000)]
fix for loading continents correctly
Andreas Müller [Tue, 6 May 2014 09:46:44 +0000 (09:46 +0000)]
better handling of empty ecology in facade
Andreas Müller [Mon, 5 May 2014 16:34:13 +0000 (16:34 +0000)]
Updated countries #3238
Katja Luther [Mon, 5 May 2014 12:59:57 +0000 (12:59 +0000)]
if deletion of an object fails the method does not throw an exception but returns a message
Alexander Oppermann [Wed, 30 Apr 2014 14:49:56 +0000 (14:49 +0000)]
Changed limits to INTEGER, so it is possible to nullify these parameters if needed
Patric Plitzner [Tue, 29 Apr 2014 12:19:15 +0000 (12:19 +0000)]
- show infraspecific taxa in Palmweb theme only if there are any
- fixed output (taxon and NOT taxa if only one sub species present)
Andreas Müller [Wed, 23 Apr 2014 12:49:33 +0000 (12:49 +0000)]
fix AccessionNumber->Locality bug in Specimen Excel Import
Patric Plitzner [Wed, 23 Apr 2014 11:43:15 +0000 (11:43 +0000)]
- added cascade saving to PreservationMethod of DerivedUnit
Alexander Oppermann [Tue, 22 Apr 2014 13:23:23 +0000 (13:23 +0000)]
Cachefile lives now for at least 7 days
Alexander Oppermann [Tue, 22 Apr 2014 08:45:42 +0000 (08:45 +0000)]
Changed if clause to fix #4194
Alexander Oppermann [Tue, 22 Apr 2014 08:26:54 +0000 (08:26 +0000)]
Uncommented check for cacheFile older than 24h see Ticket #4194
Andreas Müller [Thu, 17 Apr 2014 14:48:29 +0000 (14:48 +0000)]
Latest updates to Specimen Excel import
Andreas Müller [Thu, 17 Apr 2014 13:56:03 +0000 (13:56 +0000)]
handle ignore better
Andreas Müller [Thu, 17 Apr 2014 13:55:25 +0000 (13:55 +0000)]
determination abbrev
Alexander Oppermann [Thu, 17 Apr 2014 08:33:12 +0000 (08:33 +0000)]
Documentation for Webservice
edit-jenkins [Wed, 16 Apr 2014 12:22:36 +0000 (12:22 +0000)]
[maven-release-plugin] prepare for next development iteration
edit-jenkins [Wed, 16 Apr 2014 12:22:34 +0000 (12:22 +0000)]
[maven-release-plugin] prepare release cdmlib-parent-3.3.3
Cherian Mathew [Tue, 15 Apr 2014 09:25:43 +0000 (09:25 +0000)]
removed ignore
Andreas Müller [Mon, 14 Apr 2014 09:01:31 +0000 (09:01 +0000)]
minor
Cherian Mathew [Fri, 11 Apr 2014 13:56:13 +0000 (13:56 +0000)]
adding context path to url
Alexander Oppermann [Fri, 11 Apr 2014 12:56:24 +0000 (12:56 +0000)]
Added missing sort to method listTaxonChildNodeOf via comparator
Cherian Mathew [Thu, 10 Apr 2014 14:20:15 +0000 (14:20 +0000)]
ignore tests for release
Alexander Oppermann [Thu, 10 Apr 2014 14:19:40 +0000 (14:19 +0000)]
*added Test for service method: getTaxonOfAcceptedTaxaByClassification and countTaxonOfAcceptedTaxaByClassification
*fixed SQL Statement so it works with H2 DB
edit-jenkins [Thu, 10 Apr 2014 13:51:08 +0000 (13:51 +0000)]
[maven-release-plugin] prepare for next development iteration
edit-jenkins [Thu, 10 Apr 2014 13:51:05 +0000 (13:51 +0000)]
[maven-release-plugin] prepare release cdmlib-parent-3.3.2
Alexander Oppermann [Thu, 10 Apr 2014 12:51:15 +0000 (12:51 +0000)]
*added service layer method: countAllNodesForClassification
*improved performance CSVDemoExport
Andreas Müller [Thu, 10 Apr 2014 12:17:49 +0000 (12:17 +0000)]
log childIndex is null
Andreas Müller [Thu, 10 Apr 2014 12:16:48 +0000 (12:16 +0000)]
fix logging for taxa used multiple times in addParentChild
Alexander Oppermann [Thu, 10 Apr 2014 09:26:30 +0000 (09:26 +0000)]
*Update of the CSVExport WS.
*fixed memory leak
*new service method to pull list of TaxonNode according to a given classification
Andreas Müller [Wed, 9 Apr 2014 15:35:22 +0000 (15:35 +0000)]
new doubtful relationships for BM import
Andreas Müller [Wed, 9 Apr 2014 15:29:29 +0000 (15:29 +0000)]
handle inverse and doubtful taxon relations in Berlin Model import
Andreas Müller [Wed, 9 Apr 2014 14:36:12 +0000 (14:36 +0000)]
change log4j properties
Andreas Müller [Wed, 9 Apr 2014 14:27:53 +0000 (14:27 +0000)]
fix GeoServiceTest
Cherian Mathew [Wed, 9 Apr 2014 14:27:35 +0000 (14:27 +0000)]
DatabaseServiceHibernateImpl : added important fixme
CdmPersistentDataSource : clean up
CdmPersistentXMLSource : added context path enum for remoting
CdmApplicationUtils : variable change
Andreas Müller [Wed, 9 Apr 2014 12:43:42 +0000 (12:43 +0000)]
fix country mapping
Andreas Kohlbecker [Wed, 9 Apr 2014 09:09:01 +0000 (09:09 +0000)]
loading annotations with distribution elements - #3348 (should annotations always be returned for cdm instances? [DISCUSS])
Andreas Kohlbecker [Tue, 8 Apr 2014 15:05:38 +0000 (15:05 +0000)]
reverting r20536 , related to #4174 (simple search for Micrasterias* causes LazyInitializationException)
Andreas Kohlbecker [Tue, 8 Apr 2014 15:05:33 +0000 (15:05 +0000)]
fixing #4174 (simple search for Micrasterias* causes LazyInitializationException)
Katja Luther [Tue, 8 Apr 2014 12:24:15 +0000 (12:24 +0000)]
add service to get all nodes of a classification
Andreas Müller [Tue, 8 Apr 2014 10:44:22 +0000 (10:44 +0000)]
remove isFigure from getImageMedia
Andreas Kohlbecker [Mon, 7 Apr 2014 15:06:47 +0000 (15:06 +0000)]
fixing TYPEDESIGNATION_INIT_STRATEGY to avoid LIEs
Andreas Kohlbecker [Mon, 7 Apr 2014 15:06:43 +0000 (15:06 +0000)]
fixing NAMERELATIONSHIP_INIT_STRATEGY to avoid LIEs
Andreas Kohlbecker [Mon, 7 Apr 2014 14:17:24 +0000 (14:17 +0000)]
fixing #4176 (Dataportal shows wrong symbols for non-symmetric taxon relationships)
Cherian Mathew [Fri, 4 Apr 2014 15:38:05 +0000 (15:38 +0000)]
added comments / javadoc
Andreas Kohlbecker [Fri, 4 Apr 2014 10:30:04 +0000 (10:30 +0000)]
fixing bug in NameServiceImpl (toNameRelations never could be listed) #4175 (some name relations (basionym) missing)
Cherian Mathew [Fri, 4 Apr 2014 10:25:58 +0000 (10:25 +0000)]
adding temprary workaround for implementing remote controller
Andreas Kohlbecker [Fri, 4 Apr 2014 09:23:29 +0000 (09:23 +0000)]
extending the title and name cache auto initializer by relationsFromThisName - #4174 (simple search for Micrasterias* causes LazyInitializationException)
Andreas Kohlbecker [Fri, 4 Apr 2014 09:23:24 +0000 (09:23 +0000)]
logging json serialization
Cherian Mathew [Fri, 4 Apr 2014 08:21:08 +0000 (08:21 +0000)]
TestDatabase / CdmPersistentDataSourceTest / CdmApplicationUtils : updated as per Cdm Source refactoring
ICdmDataSource : moved generic methods to super interface ICdmSource
CdmPersistentDataSource : refactored by spliting the utility part to CdmPersistentXMLUtils and the jDom elementpart to CdmXMLPersistentSource
CdmDataSourceBase : implementing databse check methods
Cherian Mathew [Fri, 4 Apr 2014 08:16:44 +0000 (08:16 +0000)]
added extra checks when parsing jdbc connection url
Cherian Mathew [Fri, 4 Apr 2014 08:07:24 +0000 (08:07 +0000)]
moved pretty format from CdmPersistentDataSource to XmlHelp
Cherian Mathew [Fri, 4 Apr 2014 08:05:32 +0000 (08:05 +0000)]
New classes / interface to refactor the CdmDataSource object to be more generic to allow for remoting sources
ICdmSource / CdmSource : Base class / interface which represent any CDM Source
ICdmPersistentSource : interface which represents a persistent cdm source
CdmPersistentXMLSource : class which represents a cdm persistent source in the form of a jDom xml element
Cherian Mathew [Fri, 4 Apr 2014 07:58:51 +0000 (07:58 +0000)]
CdmPersistentSourceUtils : new class which contains all functionality to manage the persistent cdm sources config (taken from CdmPersistentDataSource)
CdmSourceException : wraps around exceptions when interacting with the Cdm Sources
Andreas Kohlbecker [Thu, 3 Apr 2014 16:47:36 +0000 (16:47 +0000)]
fixing #4172 (NPE in ext/edit/mapServiceParameters/taxonOccurrencesFor/{uuid})
Cherian Mathew [Thu, 3 Apr 2014 13:58:49 +0000 (13:58 +0000)]
updated IPrimer service settings
Cherian Mathew [Thu, 3 Apr 2014 13:57:45 +0000 (13:57 +0000)]
added methods to get schema version and check if db is empty
house-keeping and adding javadoc
Patric Plitzner [Wed, 2 Apr 2014 09:35:28 +0000 (09:35 +0000)]
- added service method to retrieve a map of SingleReads and their "hosting" Sequences
Andreas Kohlbecker [Tue, 1 Apr 2014 15:22:02 +0000 (15:22 +0000)]
fixing initstrategy for #3182 (roteliste: categorical data does not show up)
Patric Plitzner [Tue, 1 Apr 2014 06:50:25 +0000 (06:50 +0000)]
- added two NewInstance() methods to Amplification
- added getUuidAndDescriptions to IAmplificationService and DAO
Katja Luther [Mon, 31 Mar 2014 10:25:31 +0000 (10:25 +0000)]
add tests for treeIndex and deletion of nodes
Patric Plitzner [Mon, 31 Mar 2014 09:52:29 +0000 (09:52 +0000)]
- bundled services for molecular data in one package
- added more tests
Alexander Oppermann [Mon, 31 Mar 2014 08:25:42 +0000 (08:25 +0000)]
Generate CSV file from pojo
Alexander Oppermann [Mon, 31 Mar 2014 08:24:12 +0000 (08:24 +0000)]
Generate CSV file from pojo
Patric Plitzner [Mon, 31 Mar 2014 08:08:46 +0000 (08:08 +0000)]
- added IAmplificationService and ISequenceService
- added service methods to move derivates from one to another
- added test for move method
Andreas Kohlbecker [Sat, 29 Mar 2014 20:50:59 +0000 (20:50 +0000)]
performance improvement for listChildNodes of a taxon
Andreas Kohlbecker [Fri, 28 Mar 2014 17:39:15 +0000 (17:39 +0000)]
fixing #4168 (performance problem with DescriptionListPortalController.getDescriptionElementsForTaxon())
edit-jenkins [Fri, 28 Mar 2014 08:53:38 +0000 (08:53 +0000)]
[maven-release-plugin] prepare for next development iteration
edit-jenkins [Fri, 28 Mar 2014 08:53:32 +0000 (08:53 +0000)]
[maven-release-plugin] prepare release cdmlib-parent-3.3.1
p.kelbert [Thu, 27 Mar 2014 14:27:44 +0000 (14:27 +0000)]
debug collection and institution for excel import
Andreas Kohlbecker [Thu, 27 Mar 2014 12:51:48 +0000 (12:51 +0000)]
cdmlib part for #3766 (Check if specimenOrObservation.kindOfUnit is shown correctly in data portal)