cdmlib.git
3 years agoref #9252 using DefinedTermBase for term fields in DTOs and TypedEdityRefernce for...
Andreas Kohlbecker [Mon, 19 Oct 2020 06:27:31 +0000 (08:27 +0200)]
ref #9252 using DefinedTermBase for term fields in DTOs and TypedEdityRefernce for indentifications

3 years agoref #9252 localizing kind of unit in SpecimenOrObservationBaseDTO
Andreas Kohlbecker [Fri, 16 Oct 2020 16:01:40 +0000 (18:01 +0200)]
ref #9252 localizing kind of unit in SpecimenOrObservationBaseDTO

3 years agofix #9258 using Partial for date field in FieldUnitDTO
Andreas Kohlbecker [Fri, 16 Oct 2020 11:50:09 +0000 (13:50 +0200)]
fix #9258 using Partial for date field in FieldUnitDTO

3 years agoref #8419 ref #9252 introducing specimenIdentifier field in DTO and experimental...
Andreas Kohlbecker [Fri, 16 Oct 2020 10:04:31 +0000 (12:04 +0200)]
ref #8419 ref #9252 introducing specimenIdentifier field in DTO and experimental accessionNumber cleanup

3 years agoref #8423 OccurrenceServiceImpl.findFieldUnitDTO() : fixing merge problem of derivate...
Andreas Kohlbecker [Fri, 16 Oct 2020 06:58:18 +0000 (08:58 +0200)]
ref #8423 OccurrenceServiceImpl.findFieldUnitDTO() : fixing merge problem of derivate paths

3 years agoref #9253 cleaning up caller of OccurrenceServiceImpl.findFieldUnitDTO(..)
Andreas Kohlbecker [Thu, 15 Oct 2020 19:34:27 +0000 (21:34 +0200)]
ref #9253 cleaning up caller of OccurrenceServiceImpl.findFieldUnitDTO(..)

3 years agoref #8423 raising log level of problematic situation and code cleaning
Andreas Kohlbecker [Thu, 15 Oct 2020 19:26:34 +0000 (21:26 +0200)]
ref #8423 raising log level of problematic situation and code cleaning

3 years agoref #8423 ref #9253, ref #9252 fixing duplicate addition of DerivedUnitDTOs
Andreas Kohlbecker [Thu, 15 Oct 2020 15:40:04 +0000 (17:40 +0200)]
ref #8423 ref #9253, ref #9252 fixing duplicate addition of DerivedUnitDTOs

3 years agoref #9252 basing SpecimenOrObservationBaseDTO on TypedEntityReference
Andreas Kohlbecker [Thu, 15 Oct 2020 15:28:09 +0000 (17:28 +0200)]
ref #9252 basing SpecimenOrObservationBaseDTO on TypedEntityReference

3 years agoref #9252 determinig hasTypes from actual data and fixing type probelms in methods
Andreas Kohlbecker [Thu, 15 Oct 2020 13:35:02 +0000 (15:35 +0200)]
ref #9252 determinig hasTypes from actual data and fixing type probelms in methods

3 years agoref #9257 comments including questions on missing filtering in the DrivedUnitDTO...
Andreas Kohlbecker [Thu, 15 Oct 2020 10:46:14 +0000 (12:46 +0200)]
ref #9257 comments including questions on missing filtering in the DrivedUnitDTO construction

3 years agoref #9252 ref #9257 exposing SpecimenOrObservationType filter to factory method and...
Andreas Kohlbecker [Thu, 15 Oct 2020 10:26:12 +0000 (12:26 +0200)]
ref #9252 ref #9257 exposing SpecimenOrObservationType filter to factory method and better flag handling

3 years agoref #9256: fix bug in nametypedesignation string
Katja Luther [Thu, 15 Oct 2020 09:59:31 +0000 (11:59 +0200)]
ref  #9256: fix bug in nametypedesignation string

3 years agofix #9254 removing restriction to DerivedUnit in conmroller method
Andreas Kohlbecker [Thu, 15 Oct 2020 09:40:17 +0000 (11:40 +0200)]
fix #9254 removing restriction to DerivedUnit in conmroller method

3 years agoref #9253 todo comment
Andreas Kohlbecker [Thu, 15 Oct 2020 09:25:35 +0000 (11:25 +0200)]
ref #9253 todo comment

3 years agoref #9252 adapting service method no new DTO name
Andreas Kohlbecker [Thu, 15 Oct 2020 06:52:47 +0000 (08:52 +0200)]
ref #9252 adapting service method no new DTO name

3 years agoref #9252 harmonizing SpecimenOrOberservationBase related DTOs - renaming classes
Andreas Kohlbecker [Wed, 14 Oct 2020 12:46:09 +0000 (14:46 +0200)]
ref #9252 harmonizing SpecimenOrOberservationBase related DTOs - renaming classes

3 years agoref #9252 harmonizing SpecimenOrOberservationBase related DTOs
Andreas Kohlbecker [Wed, 14 Oct 2020 12:14:09 +0000 (14:14 +0200)]
ref #9252 harmonizing SpecimenOrOberservationBase related DTOs

3 years agoref #9252 harmonizing SpecimenOrOberservationBase related DTOs
Andreas Kohlbecker [Wed, 14 Oct 2020 12:04:48 +0000 (14:04 +0200)]
ref #9252 harmonizing SpecimenOrOberservationBase related DTOs

3 years agoref #9249 ref #3978 harmonization of FieldUnit and Derivate DTOs:
Andreas Kohlbecker [Tue, 13 Oct 2020 15:56:01 +0000 (17:56 +0200)]
ref #9249 ref #3978 harmonization of FieldUnit and Derivate DTOs:
  - using pointDTO in all webservices
  - cleaning up FieldUnitDTO and DerivateDTO
  - using CollectionDTO on DerivateDTO

3 years agoref #8774: smaller changes in termDtos
Katja Luther [Tue, 13 Oct 2020 12:16:01 +0000 (14:16 +0200)]
ref #8774: smaller changes in termDtos

3 years agoTypedEntityReference reducing factory methods to one
Andreas Kohlbecker [Tue, 13 Oct 2020 10:32:50 +0000 (12:32 +0200)]
TypedEntityReference reducing factory methods to one

3 years agoref #3978 PointBeanProcessor: sexagesimalstring without geospacial reference system
Andreas Kohlbecker [Tue, 13 Oct 2020 10:23:44 +0000 (12:23 +0200)]
ref #3978 PointBeanProcessor: sexagesimalstring without geospacial reference system

3 years agofix test - last commit
Katja Luther [Mon, 12 Oct 2020 13:18:16 +0000 (15:18 +0200)]
fix test - last commit

3 years agofix test - last commit
Katja Luther [Mon, 12 Oct 2020 13:02:13 +0000 (15:02 +0200)]
fix test - last commit

3 years agorevert change in TermNode
Katja Luther [Mon, 12 Oct 2020 12:40:41 +0000 (14:40 +0200)]
revert change in TermNode

3 years agofix test -continue
Katja Luther [Mon, 12 Oct 2020 12:37:58 +0000 (14:37 +0200)]
fix test -continue

3 years agofix test -continue
Katja Luther [Mon, 12 Oct 2020 12:21:32 +0000 (14:21 +0200)]
fix test -continue

3 years agofix test -continue
Katja Luther [Mon, 12 Oct 2020 12:05:38 +0000 (14:05 +0200)]
fix test -continue

3 years agofix test -continue
Katja Luther [Mon, 12 Oct 2020 11:46:48 +0000 (13:46 +0200)]
fix test -continue

3 years agofix test
Katja Luther [Mon, 12 Oct 2020 11:30:43 +0000 (13:30 +0200)]
fix test

3 years agofix test
Katja Luther [Mon, 12 Oct 2020 11:16:51 +0000 (13:16 +0200)]
fix test

3 years agoref #8774: dto and service adaptions to use dtos for term tree editors
Katja Luther [Mon, 12 Oct 2020 09:04:08 +0000 (11:04 +0200)]
ref #8774: dto and service adaptions to use dtos for term tree editors

3 years agoref #9238 removing quick fix allied in 4d6b5667 and adapting config for json serializ...
Andreas Kohlbecker [Fri, 9 Oct 2020 07:47:45 +0000 (09:47 +0200)]
ref #9238 removing quick fix allied in 4d6b5667 and adapting config for json serialization

3 years agoref #9238 extending SpecimenTypeDesignationDTO with more fields and associated DTOs...
Andreas Kohlbecker [Thu, 8 Oct 2020 16:42:54 +0000 (18:42 +0200)]
ref #9238 extending SpecimenTypeDesignationDTO with more fields and associated DTOs, introducing ReferenceDTO, supressing unwanted and dangerous fields of RegistrationDTO

3 years agoref #9238 replacing entitiy by SpecimenTypeDesignationDTO in DerivateDTO
Andreas Kohlbecker [Wed, 7 Oct 2020 12:57:28 +0000 (14:57 +0200)]
ref #9238 replacing entitiy by SpecimenTypeDesignationDTO in DerivateDTO

3 years agoupdated cdmTest.h2.db (not sure anymore why this was necessary)
Andreas Müller [Wed, 7 Oct 2020 09:32:50 +0000 (11:32 +0200)]
updated cdmTest.h2.db (not sure anymore why this was necessary)

3 years agoref #9238 quick fix at least for the test data in reference_int Glenodinium apiculatum
Andreas Kohlbecker [Fri, 2 Oct 2020 13:27:37 +0000 (15:27 +0200)]
ref #9238 quick fix at least for the test data in reference_int Glenodinium apiculatum

3 years agocdmLight: fix missing name of toRelationships
Katja Luther [Fri, 25 Sep 2020 13:03:53 +0000 (15:03 +0200)]
cdmLight: fix missing name of toRelationships

3 years agoref #9124 fix incorrect Altituded recommended measurement unit update script
Andreas Müller [Thu, 24 Sep 2020 13:01:37 +0000 (15:01 +0200)]
ref #9124 fix incorrect Altituded recommended measurement unit update script

3 years agocleanup
Andreas Müller [Thu, 24 Sep 2020 11:54:25 +0000 (13:54 +0200)]
cleanup

3 years agoref #9225 adapting TaxonGraphHibernateListener processor and test to changed mapping...
Andreas Kohlbecker [Thu, 24 Sep 2020 10:33:39 +0000 (12:33 +0200)]
ref #9225 adapting TaxonGraphHibernateListener processor and test to changed mapping of TaxonName.nomenclaturalSource

3 years agoref #9225 fix setNomenclaturalSource bidirectional setting
Andreas Müller [Thu, 24 Sep 2020 08:28:44 +0000 (10:28 +0200)]
ref #9225 fix setNomenclaturalSource  bidirectional setting

3 years agoref #6356 using TaxonNodeSortMode.RankAndAlphabeticalOrder as default in all contollers
Andreas Kohlbecker [Tue, 22 Sep 2020 16:11:50 +0000 (18:11 +0200)]
ref #6356 using TaxonNodeSortMode.RankAndAlphabeticalOrder as default in all contollers

3 years agoAutoPropertyInitializer with more type savety
Andreas Kohlbecker [Tue, 22 Sep 2020 15:01:33 +0000 (17:01 +0200)]
AutoPropertyInitializer with more type savety

3 years agocleanup and improve data and docu for BeanInitializerIntegrationTest.testInitializeMa...
Andreas Müller [Tue, 22 Sep 2020 14:28:13 +0000 (16:28 +0200)]
cleanup and improve data and docu for BeanInitializerIntegrationTest.testInitializeManyToOneProperty

3 years agocleanup
Andreas Müller [Tue, 22 Sep 2020 14:26:56 +0000 (16:26 +0200)]
cleanup

3 years agoref #9225 fix AdvancedBeanInitializer test
Andreas Müller [Tue, 22 Sep 2020 13:55:29 +0000 (15:55 +0200)]
ref #9225  fix AdvancedBeanInitializer test

3 years agoref #6581 , ref #9225 cleanup TaxonName from nomenclaturalSource handling
Andreas Müller [Tue, 22 Sep 2020 10:35:24 +0000 (12:35 +0200)]
ref #6581 , ref #9225 cleanup TaxonName from nomenclaturalSource handling

3 years agocleanup
Andreas Müller [Tue, 22 Sep 2020 10:33:55 +0000 (12:33 +0200)]
cleanup

3 years agoref #9225 fix ValidationTest / 3rd Level duplicate validation for taxon names
Andreas Müller [Tue, 22 Sep 2020 10:33:10 +0000 (12:33 +0200)]
ref #9225  fix ValidationTest / 3rd Level duplicate validation for taxon names

3 years agoref #9225 !! PRELIMINARY also ValidationTest
Andreas Müller [Mon, 21 Sep 2020 14:58:59 +0000 (16:58 +0200)]
ref #9225  !! PRELIMINARY also ValidationTest

3 years agoref #9225 !! PRELIMINARY ignore failing tests
Andreas Müller [Mon, 21 Sep 2020 14:46:19 +0000 (16:46 +0200)]
ref #9225  !! PRELIMINARY ignore failing tests

3 years agocleanup
Andreas Müller [Mon, 21 Sep 2020 14:18:44 +0000 (16:18 +0200)]
cleanup

3 years agoref #9225 revert direction of TaxonName.nomenclaturalSource -> NomenclaturalSource...
Andreas Müller [Mon, 21 Sep 2020 14:17:36 +0000 (16:17 +0200)]
ref #9225  revert direction of TaxonName.nomenclaturalSource -> NomenclaturalSource.sourcedName mapping and some related issues

3 years agoref #6589 add ProtologMover (not yet ready)
Andreas Müller [Thu, 17 Sep 2020 13:11:21 +0000 (15:11 +0200)]
ref #6589 add ProtologMover  (not yet ready)

3 years agocleanup
Andreas Müller [Wed, 16 Sep 2020 12:13:31 +0000 (14:13 +0200)]
cleanup

3 years agofix logging in StructuredDescriptionAggregationTest
Andreas Müller [Wed, 16 Sep 2020 09:19:04 +0000 (11:19 +0200)]
fix logging in StructuredDescriptionAggregationTest

3 years agoadding more explanation to test assertion
Andreas Kohlbecker [Wed, 16 Sep 2020 13:09:43 +0000 (15:09 +0200)]
adding more explanation to test assertion

3 years agoref #9225 update cached model
Andreas Müller [Wed, 16 Sep 2020 07:58:47 +0000 (09:58 +0200)]
ref #9225 update cached model

3 years agofix #9223 TaxonGraphBeforeTransactionCompleteProcess using NoemclaturalSource to...
Andreas Kohlbecker [Tue, 15 Sep 2020 20:20:09 +0000 (22:20 +0200)]
fix #9223 TaxonGraphBeforeTransactionCompleteProcess using NoemclaturalSource to detect nomRef changes

3 years agoRevert "temporarily unignore failing test"
Andreas Müller [Tue, 15 Sep 2020 09:03:46 +0000 (11:03 +0200)]
Revert "temporarily unignore failing test"

This reverts commit e488332815bad4f7e3de2844f22cf8e36b82314c.

3 years agotemporarily unignore failing test
Andreas Müller [Tue, 15 Sep 2020 09:02:48 +0000 (11:02 +0200)]
temporarily unignore failing test

3 years agoref #9225 implement NomenclaturalSource (cleanup and update script)
Andreas Müller [Tue, 15 Sep 2020 07:33:35 +0000 (09:33 +0200)]
ref #9225 implement NomenclaturalSource (cleanup and update script)

3 years agocleanup
Andreas Müller [Tue, 15 Sep 2020 07:25:22 +0000 (09:25 +0200)]
cleanup

3 years agodeprecate printDataSetWithNull
Andreas Müller [Tue, 15 Sep 2020 07:23:41 +0000 (09:23 +0200)]
deprecate printDataSetWithNull

3 years agocleanup
Andreas Müller [Mon, 14 Sep 2020 21:02:24 +0000 (23:02 +0200)]
cleanup

3 years agoref #9225 implement NomenclaturalSource
Andreas Müller [Mon, 14 Sep 2020 20:42:36 +0000 (22:42 +0200)]
ref #9225 implement NomenclaturalSource

3 years agocleanup
Andreas Müller [Mon, 14 Sep 2020 12:26:05 +0000 (14:26 +0200)]
cleanup

3 years agoref #6581 add listener to TaxonName.nomenclaturalSource (cont.)
Andreas Müller [Thu, 10 Sep 2020 15:23:48 +0000 (17:23 +0200)]
ref #6581 add listener to TaxonName.nomenclaturalSource (cont.)

3 years agoref #3547 remove created and updated in CdmEntityDaoBaseTest
Andreas Müller [Thu, 10 Sep 2020 15:23:16 +0000 (17:23 +0200)]
ref #3547 remove created and updated in CdmEntityDaoBaseTest

3 years agocleanup
Andreas Müller [Thu, 10 Sep 2020 13:09:06 +0000 (15:09 +0200)]
cleanup

3 years agoref #6581 add listener to TaxonName.nomenclaturalSource
Andreas Müller [Thu, 10 Sep 2020 13:04:06 +0000 (15:04 +0200)]
ref #6581 add listener to TaxonName.nomenclaturalSource

3 years agoref #6581 fixing means to get bean property
Andreas Kohlbecker [Fri, 11 Sep 2020 14:19:51 +0000 (16:19 +0200)]
ref #6581 fixing means to get bean property

3 years agofix #7862 full documentation on TaxonGraphHibernateListener, TaxonGraphBeforeTransact...
Andreas Kohlbecker [Fri, 11 Sep 2020 11:22:04 +0000 (13:22 +0200)]
fix #7862 full documentation on TaxonGraphHibernateListener, TaxonGraphBeforeTransactionCompleteProcess etc.

3 years agocleanup
Andreas Müller [Thu, 10 Sep 2020 12:15:12 +0000 (14:15 +0200)]
cleanup

3 years agoref #3547 remove unused test data for TaxonNameDaoHibernateImplTest.xml (cont.)
Andreas Müller [Thu, 10 Sep 2020 12:14:59 +0000 (14:14 +0200)]
ref #3547 remove unused test data for TaxonNameDaoHibernateImplTest.xml (cont.)

3 years agoref #3547 remove unused test data for TaxonNameDaoHibernateImplTest.xml
Andreas Müller [Thu, 10 Sep 2020 12:13:14 +0000 (14:13 +0200)]
ref #3547 remove unused test data for TaxonNameDaoHibernateImplTest.xml

3 years agocleanup and some java doc
Andreas Müller [Thu, 10 Sep 2020 11:25:48 +0000 (13:25 +0200)]
cleanup and some java doc

4 years agocleanup
Andreas Müller [Thu, 10 Sep 2020 07:37:24 +0000 (09:37 +0200)]
cleanup

4 years agoref #6581 ref #9222 fixing NPE in TaxonPortalController
Andreas Kohlbecker [Thu, 10 Sep 2020 06:34:18 +0000 (08:34 +0200)]
ref #6581 ref #9222 fixing NPE in TaxonPortalController

4 years agoref #6581 ref #9222 fixing init strategy in TaxonPortalController
Andreas Kohlbecker [Thu, 10 Sep 2020 06:24:03 +0000 (08:24 +0200)]
ref #6581 ref #9222 fixing init strategy in TaxonPortalController

4 years agofix TaxonName.getCitationString()
Andreas Müller [Wed, 9 Sep 2020 20:23:52 +0000 (22:23 +0200)]
fix TaxonName.getCitationString()

4 years agocleanup
Andreas Müller [Wed, 9 Sep 2020 20:23:26 +0000 (22:23 +0200)]
cleanup

4 years agoref #6581 ref #9222 adding PolytomousKeyNodePortalController and missing name.nomencl...
Andreas Kohlbecker [Wed, 9 Sep 2020 16:15:54 +0000 (18:15 +0200)]
ref #6581 ref #9222 adding PolytomousKeyNodePortalController and missing name.nomenclaturalSource init strategys in TaxonPortalController

4 years agoremove method rectifyNameCacheStrategy and some cleanup
Andreas Müller [Wed, 9 Sep 2020 14:42:10 +0000 (16:42 +0200)]
remove method rectifyNameCacheStrategy and some cleanup

4 years agocleanup
Andreas Müller [Wed, 9 Sep 2020 14:37:23 +0000 (16:37 +0200)]
cleanup

4 years agofix return type of clone methods in CdmBase classes and some cleanup
Andreas Müller [Wed, 9 Sep 2020 13:45:20 +0000 (15:45 +0200)]
fix return type of clone methods in CdmBase classes and some cleanup

4 years agocleanup
Andreas Müller [Wed, 9 Sep 2020 12:31:26 +0000 (14:31 +0200)]
cleanup

4 years agoref #9204 adapt all spring application context xml configuration files to spring...
Andreas Müller [Wed, 9 Sep 2020 12:30:55 +0000 (14:30 +0200)]
ref #9204 adapt all spring application context xml configuration files to spring schema version 4.3

4 years agoref #9222 adapting dataportal and tests to single sourced classes - typedesignations
Andreas Kohlbecker [Wed, 9 Sep 2020 10:45:11 +0000 (12:45 +0200)]
ref #9222 adapting dataportal and tests to single sourced classes - typedesignations

4 years agoref #9222 ref #6581 adapting web services to single sourced classes
Andreas Kohlbecker [Wed, 9 Sep 2020 08:07:32 +0000 (10:07 +0200)]
ref #9222 ref #6581 adapting web services to single sourced classes

4 years agoadapt TestModelUpdate
Andreas Müller [Mon, 7 Sep 2020 20:38:18 +0000 (22:38 +0200)]
adapt TestModelUpdate

4 years agoref #6581 fix detail handling with single quote character
Andreas Müller [Mon, 7 Sep 2020 20:37:35 +0000 (22:37 +0200)]
ref #6581 fix detail handling with single quote character

4 years agoref #9124 skip altitude adder if altitude feature does not yet exist
Andreas Müller [Mon, 7 Sep 2020 20:34:54 +0000 (22:34 +0200)]
ref #9124 skip altitude adder if altitude feature does not yet exist

4 years agocleanup
Andreas Müller [Mon, 7 Sep 2020 20:32:46 +0000 (22:32 +0200)]
cleanup

4 years agofix #8964 update reverse label for later homonym (update script)
Andreas Müller [Mon, 7 Sep 2020 15:51:37 +0000 (17:51 +0200)]
fix #8964 update reverse label for later homonym (update script)

4 years agofix #8326 update label for blocking name and isonym relationships (update script)
Andreas Müller [Mon, 7 Sep 2020 15:49:46 +0000 (17:49 +0200)]
fix #8326 update label for blocking name and isonym relationships (update script)

4 years agofix #9124 add meter to altitude (update script)
Andreas Müller [Mon, 7 Sep 2020 15:47:49 +0000 (17:47 +0200)]
fix #9124 add meter to altitude (update script)

4 years agofix #9120 update flowering period as supports temporal data (update script)
Andreas Müller [Mon, 7 Sep 2020 15:46:36 +0000 (17:46 +0200)]
fix #9120 update flowering period as supports temporal data (update script)