cdmlib.git
4 years agoref #4884 unify datatype handling in schema updaters
Andreas Müller [Wed, 24 Jul 2019 16:12:56 +0000 (18:12 +0200)]
ref #4884 unify datatype handling in schema updaters

4 years agocleanup
Andreas Müller [Wed, 24 Jul 2019 16:11:15 +0000 (18:11 +0200)]
cleanup

4 years agoref #8404 Add update step list within updaters
Andreas Müller [Wed, 24 Jul 2019 14:24:21 +0000 (16:24 +0200)]
ref #8404 Add update step list within updaters

4 years ago#8398 add botanical codes prior to 1990
Andreas Müller [Wed, 24 Jul 2019 10:01:40 +0000 (12:01 +0200)]
#8398 add botanical codes prior to 1990

4 years agominor
Andreas Müller [Wed, 24 Jul 2019 09:45:35 +0000 (11:45 +0200)]
minor

4 years agoref #7334 remove TaxonBase.proParte and partial and ref #8398 add codeEditon to nomSt...
Andreas Müller [Wed, 24 Jul 2019 09:45:22 +0000 (11:45 +0200)]
ref #7334 remove TaxonBase.proParte and partial and ref #8398 add codeEditon to nomStatus and nameRelations

4 years agoref #6794 remove FeatureNodeService from BatchValidationUtil
Andreas Müller [Wed, 24 Jul 2019 09:24:16 +0000 (11:24 +0200)]
ref #6794 remove FeatureNodeService from BatchValidationUtil

4 years agoref #6794 delete FeatureDao
Andreas Müller [Wed, 24 Jul 2019 09:20:46 +0000 (11:20 +0200)]
ref #6794 delete FeatureDao

4 years agoref #6794 javadoc update FeatureTree -> TermTree
Andreas Müller [Wed, 24 Jul 2019 09:14:07 +0000 (11:14 +0200)]
ref #6794 javadoc update FeatureTree -> TermTree

4 years agoref #6794 some adaptations in Jaxb to FeatureTree -> TermTree
Andreas Müller [Wed, 24 Jul 2019 09:13:36 +0000 (11:13 +0200)]
ref #6794 some adaptations in Jaxb to FeatureTree -> TermTree

4 years agoref #6794 adapt jsonConfigurations.xml from FeatureTree/Node -> TermTree/Node
Andreas Müller [Wed, 24 Jul 2019 09:12:18 +0000 (11:12 +0200)]
ref #6794 adapt jsonConfigurations.xml from FeatureTree/Node -> TermTree/Node

4 years agoref #6794 add TermTreeService and TermNodeService to httpInvokerServices
Andreas Müller [Wed, 24 Jul 2019 09:11:00 +0000 (11:11 +0200)]
ref #6794 add TermTreeService and TermNodeService to httpInvokerServices

4 years agoref #6794 remove FeatureTree from some hibernate.cfgs again
Andreas Müller [Wed, 24 Jul 2019 09:10:07 +0000 (11:10 +0200)]
ref #6794 remove FeatureTree from some hibernate.cfgs again

4 years agoref #8281 add doubtful to TaxonNode (remaining)
Andreas Müller [Wed, 24 Jul 2019 09:08:13 +0000 (11:08 +0200)]
ref #8281 add doubtful to TaxonNode (remaining)

4 years agoremove uplaced, excluded, partial and proparte from TaxonBase test data
Andreas Müller [Tue, 23 Jul 2019 20:18:11 +0000 (22:18 +0200)]
remove uplaced, excluded, partial and proparte from TaxonBase test data

4 years agoref #8281 add doubtful to TaxonNode
Andreas Müller [Tue, 23 Jul 2019 20:08:50 +0000 (22:08 +0200)]
ref #8281 add doubtful to TaxonNode

4 years agofix #8398 add nomenclatural code edition to nomStatus, NameRelationship and HybridRel...
Andreas Müller [Tue, 23 Jul 2019 18:42:21 +0000 (20:42 +0200)]
fix #8398 add nomenclatural code edition to nomStatus, NameRelationship and HybridRelationship and make RuleConsidered an embedded class

4 years agofix potential NPE in GatheringEvent.clone
Andreas Müller [Tue, 23 Jul 2019 18:39:12 +0000 (20:39 +0200)]
fix potential NPE in GatheringEvent.clone

4 years agocleanup
Andreas Müller [Tue, 23 Jul 2019 18:38:37 +0000 (20:38 +0200)]
cleanup

4 years agoref #6794 ignore FeatureTest
Andreas Müller [Mon, 22 Jul 2019 16:42:39 +0000 (18:42 +0200)]
ref #6794 ignore FeatureTest

4 years agocleanup
Andreas Müller [Mon, 22 Jul 2019 16:42:14 +0000 (18:42 +0200)]
cleanup

4 years agoref #6794 add TermNodeService and TermTreeService and make FeatureXXX services deprecated
Andreas Müller [Mon, 22 Jul 2019 16:41:52 +0000 (18:41 +0200)]
ref #6794 add TermNodeService and TermTreeService and make FeatureXXX services deprecated

4 years agoref #6794 rename some parameters, methods and classes
Andreas Müller [Mon, 22 Jul 2019 16:37:41 +0000 (18:37 +0200)]
ref #6794 rename some parameters, methods and classes

4 years agoref #6794 rename TermTreeNode -> TermNode
Andreas Müller [Mon, 22 Jul 2019 11:38:16 +0000 (13:38 +0200)]
ref #6794 rename TermTreeNode -> TermNode

4 years agoref #6794 rename getFeatureNode -> getTermNode in cdmlib-print
Andreas Müller [Mon, 22 Jul 2019 11:37:54 +0000 (13:37 +0200)]
ref #6794 rename getFeatureNode -> getTermNode in cdmlib-print

4 years agoref #6794 rename TermTreeNode -> TermNode
Andreas Müller [Mon, 22 Jul 2019 11:35:49 +0000 (13:35 +0200)]
ref #6794 rename TermTreeNode -> TermNode

4 years agoignore ConfigFileUtilTest.testGetFolderSeperator
Andreas Müller [Mon, 22 Jul 2019 11:32:18 +0000 (13:32 +0200)]
ignore ConfigFileUtilTest.testGetFolderSeperator

4 years agoref #6794 rename TermTreeNode -> TermNode
Andreas Müller [Mon, 22 Jul 2019 11:31:05 +0000 (13:31 +0200)]
ref #6794 rename TermTreeNode -> TermNode

4 years agoref #6794 finalize FeatureTreeMover (update treeindex)
Andreas Müller [Fri, 19 Jul 2019 21:28:22 +0000 (23:28 +0200)]
ref #6794 finalize FeatureTreeMover (update treeindex)

4 years agominor
Andreas Müller [Fri, 19 Jul 2019 21:19:08 +0000 (23:19 +0200)]
minor

4 years agoref #6794 minor adaptations of tests
Andreas Müller [Fri, 19 Jul 2019 20:24:01 +0000 (22:24 +0200)]
ref #6794 minor adaptations of tests

4 years agoref #6794 remove duplicate TermRelationshipType in test/hibernate.cfg.xml
Andreas Müller [Fri, 19 Jul 2019 19:13:04 +0000 (21:13 +0200)]
ref #6794 remove duplicate TermRelationshipType in test/hibernate.cfg.xml

4 years agoref #6794 remove FeatureTree from hibernate.cfg
Andreas Müller [Fri, 19 Jul 2019 19:03:32 +0000 (21:03 +0200)]
ref #6794 remove FeatureTree from hibernate.cfg

4 years agoref #6794 remove FeatureTree class
Andreas Müller [Fri, 19 Jul 2019 18:57:53 +0000 (20:57 +0200)]
ref #6794 remove FeatureTree class

4 years agoref #6794 add TermRelation and rename FeatureNode -> TermTreeNode
Andreas Müller [Wed, 19 Jun 2019 12:20:00 +0000 (14:20 +0200)]
ref #6794 add TermRelation and rename FeatureNode -> TermTreeNode

ref #6794 add TermRelation and TermRelationBase

4 years agoref #6794 add TermRelation and rename FeatureNode -> TermTreeNode
Andreas Müller [Wed, 6 Mar 2019 21:37:49 +0000 (22:37 +0100)]
ref #6794 add TermRelation and rename FeatureNode -> TermTreeNode

4 years agocleanup and ref #6794 rename TermTreeDaoImpl
Andreas Müller [Mon, 11 Mar 2019 13:10:26 +0000 (14:10 +0100)]
cleanup and ref #6794 rename TermTreeDaoImpl

4 years agoref #6794 add TermCollection and subclasses including TermTree
Andreas Müller [Thu, 7 Mar 2019 12:35:42 +0000 (13:35 +0100)]
ref #6794 add TermCollection and subclasses including TermTree

4 years agoref #6794 change FeatureTree to TermTree
Andreas Müller [Thu, 7 Mar 2019 12:31:08 +0000 (13:31 +0100)]
ref #6794 change FeatureTree to TermTree

4 years agoref #6794 add TermRelation and rename FeatureNode -> TermTreeNode
Andreas Müller [Wed, 6 Mar 2019 21:37:49 +0000 (22:37 +0100)]
ref #6794 add TermRelation and rename FeatureNode -> TermTreeNode

4 years agoref #6794 update some imports to model changes and add ITermTree
Andreas Müller [Fri, 19 Jul 2019 18:41:45 +0000 (20:41 +0200)]
ref #6794 update some imports to model changes and add ITermTree

4 years agoref #6794 FeatureTreeMover first implementation (not yet ready)
Andreas Müller [Wed, 17 Jul 2019 08:40:46 +0000 (10:40 +0200)]
ref #6794 FeatureTreeMover first implementation (not yet ready)

4 years agominor
Andreas Müller [Wed, 17 Jul 2019 08:31:34 +0000 (10:31 +0200)]
minor

4 years agoref #6794 change schema version and add missing attributes to updateScript
Andreas Müller [Thu, 20 Jun 2019 14:45:38 +0000 (16:45 +0200)]
ref #6794 change schema version and add missing attributes to updateScript

4 years agoref #6794 remove references to TermVocabulary.iterator()
Andreas Müller [Thu, 20 Jun 2019 10:53:44 +0000 (12:53 +0200)]
ref #6794 remove references to TermVocabulary.iterator()

4 years agoref #8336 ignore FeatureTest
Andreas Müller [Thu, 20 Jun 2019 10:53:02 +0000 (12:53 +0200)]
ref #8336 ignore FeatureTest

4 years agoref #6794 adapt TermCollection test data to boolean values in TermCollection
Andreas Müller [Thu, 20 Jun 2019 10:52:28 +0000 (12:52 +0200)]
ref #6794 adapt TermCollection test data to boolean values in TermCollection

4 years agoadd SchemaUpdater_55_58
Andreas Müller [Wed, 19 Jun 2019 10:24:17 +0000 (12:24 +0200)]
add SchemaUpdater_55_58

4 years agoref #6794 add TermCollection and subclasses including TermTree
Andreas Müller [Thu, 7 Mar 2019 12:35:42 +0000 (13:35 +0100)]
ref #6794 add TermCollection and subclasses including TermTree

4 years agoref #6794 change FeatureTree to TermTree
Andreas Müller [Thu, 7 Mar 2019 12:31:08 +0000 (13:31 +0100)]
ref #6794 change FeatureTree to TermTree

4 years agoref #6794 add TermRelation and rename FeatureNode -> TermTreeNode
Andreas Müller [Wed, 6 Mar 2019 21:37:49 +0000 (22:37 +0100)]
ref #6794 add TermRelation and rename FeatureNode -> TermTreeNode

4 years agoref #6794 move term relations down to TermCollection
Andreas Müller [Mon, 11 Mar 2019 14:05:03 +0000 (15:05 +0100)]
ref #6794 move term relations down to TermCollection

4 years agoref #6794 fix FeatureNodeServiceImplTest
Andreas Müller [Mon, 11 Mar 2019 13:40:56 +0000 (14:40 +0100)]
ref #6794 fix FeatureNodeServiceImplTest

4 years agorevert ClearDBDataSet to BlankDataSet to avoid foreign key problems during test data...
Andreas Müller [Mon, 11 Mar 2019 13:11:41 +0000 (14:11 +0100)]
revert ClearDBDataSet to BlankDataSet to avoid foreign key problems during test data creation in SDDImportTest

4 years agocleanup and ref #6794 rename TermTreeDaoImpl
Andreas Müller [Mon, 11 Mar 2019 13:10:26 +0000 (14:10 +0100)]
cleanup and ref #6794 rename TermTreeDaoImpl

4 years agoref #6794 update script for graph_id and root_id
Andreas Müller [Thu, 7 Mar 2019 15:26:28 +0000 (16:26 +0100)]
ref #6794 update script for graph_id and root_id

4 years agoreplace BlankDataSet.xml by ClearDBDataSet.xml
Andreas Müller [Thu, 7 Mar 2019 15:24:30 +0000 (16:24 +0100)]
replace BlankDataSet.xml by ClearDBDataSet.xml

4 years agocleanup
Andreas Müller [Thu, 7 Mar 2019 15:22:01 +0000 (16:22 +0100)]
cleanup

4 years agoref #6794 adjust hibernate configuration to new TermCollection and adjust test data
Andreas Müller [Thu, 7 Mar 2019 15:21:33 +0000 (16:21 +0100)]
ref #6794 adjust hibernate configuration to new TermCollection and adjust test data

4 years agoref #6794 add TermCollection and subclasses including TermTree
Andreas Müller [Thu, 7 Mar 2019 12:35:42 +0000 (13:35 +0100)]
ref #6794 add TermCollection and subclasses including TermTree

4 years agoref #6794 change FeatureTree to TermTree
Andreas Müller [Thu, 7 Mar 2019 12:31:08 +0000 (13:31 +0100)]
ref #6794 change FeatureTree to TermTree

4 years agoref #6794 update script for name changes in FeatureNode and TermVocabulary
Andreas Müller [Thu, 7 Mar 2019 09:08:30 +0000 (10:08 +0100)]
ref #6794 update script for name changes in FeatureNode and TermVocabulary

4 years agoadapt SchemaUpdater to v5.5.1
Andreas Müller [Thu, 7 Mar 2019 09:07:25 +0000 (10:07 +0100)]
adapt SchemaUpdater to v5.5.1

4 years agoref #6794 rename TermVocabulary table to TermCollection and remaining rename FeatureN...
Andreas Müller [Wed, 6 Mar 2019 23:36:53 +0000 (00:36 +0100)]
ref #6794 rename TermVocabulary table to TermCollection and remaining rename FeatureNode -> TermTreeNode

4 years agoupdate service/dataset.xsd location
Andreas Müller [Wed, 6 Mar 2019 21:58:06 +0000 (22:58 +0100)]
update service/dataset.xsd  location

4 years agoref #6794 add TermRelation and rename FeatureNode -> TermTreeNode
Andreas Müller [Wed, 6 Mar 2019 21:37:49 +0000 (22:37 +0100)]
ref #6794 add TermRelation and rename FeatureNode -> TermTreeNode

4 years agoref #6794 add TermRelation and TermRelationBase
Andreas Müller [Wed, 6 Mar 2019 11:46:52 +0000 (12:46 +0100)]
ref #6794 add TermRelation and TermRelationBase

4 years agoref #6794 add term relation type to TermType and fix TermRelationType class
Andreas Müller [Tue, 5 Mar 2019 23:47:02 +0000 (00:47 +0100)]
ref #6794 add term relation type to TermType and fix TermRelationType class

4 years agoref #6794 adapt TermsDataSet-with_auditing_info in some packages after merge problem...
Andreas Müller [Tue, 5 Mar 2019 15:34:36 +0000 (16:34 +0100)]
ref #6794 adapt TermsDataSet-with_auditing_info in some packages after merge problem solved

4 years agoref #8128 comment changes temporarily to make them compile
Andreas Müller [Fri, 1 Mar 2019 22:08:52 +0000 (23:08 +0100)]
ref #8128 comment changes temporarily to make them compile

4 years agoref #6794 add TermRelationshipType to test data
Andreas Müller [Fri, 1 Mar 2019 14:49:22 +0000 (15:49 +0100)]
ref #6794 add TermRelationshipType to test data

4 years agoref #6794 add TermRelationshipType
Andreas Müller [Thu, 28 Feb 2019 22:14:39 +0000 (23:14 +0100)]
ref #6794 add TermRelationshipType

4 years agocleanup
Andreas Müller [Thu, 28 Feb 2019 22:10:45 +0000 (23:10 +0100)]
cleanup

4 years agoref #7514 adapt MAN symbol to portal tests
Andreas Müller [Thu, 28 Feb 2019 08:15:59 +0000 (09:15 +0100)]
ref #7514 adapt MAN symbol to portal tests

4 years agopreparation for Feature.supportedClasses
Andreas Müller [Wed, 27 Feb 2019 15:34:53 +0000 (16:34 +0100)]
preparation for Feature.supportedClasses

4 years agoref #7514 update misapplied name symbols again
Andreas Müller [Tue, 26 Feb 2019 16:04:37 +0000 (17:04 +0100)]
ref #7514 update misapplied name symbols again

4 years agoAdd SchemaUpdater_55_551
Andreas Müller [Mon, 25 Feb 2019 20:01:49 +0000 (21:01 +0100)]
Add SchemaUpdater_55_551

4 years agoUpdating develop poms back to pre merge state
jenkins [Fri, 19 Jul 2019 13:12:05 +0000 (15:12 +0200)]
Updating develop poms back to pre merge state

4 years agoMerge branch 'master' into develop
jenkins [Fri, 19 Jul 2019 13:12:05 +0000 (15:12 +0200)]
Merge branch 'master' into develop

4 years agoupdating develop poms to master versions to avoid merge conflicts
jenkins [Fri, 19 Jul 2019 13:12:04 +0000 (15:12 +0200)]
updating develop poms to master versions to avoid merge conflicts

4 years agoMerge branch 'release/5.8.0' 5.8.0
jenkins [Fri, 19 Jul 2019 13:11:59 +0000 (15:11 +0200)]
Merge branch 'release/5.8.0'

4 years agoupdating poms for branch'release/5.8.0' with non-snapshot versions
jenkins [Fri, 19 Jul 2019 12:52:14 +0000 (14:52 +0200)]
updating poms for branch'release/5.8.0' with non-snapshot versions

4 years agoupdating poms for 5.9.0-SNAPSHOT development
jenkins [Fri, 19 Jul 2019 11:59:58 +0000 (13:59 +0200)]
updating poms for 5.9.0-SNAPSHOT development

4 years agoref #8281 and E+M import (additional attributes in TeamOrPersonBase, Reference and... origin/release/5.8.0
Andreas Müller [Wed, 19 Jun 2019 10:22:18 +0000 (12:22 +0200)]
ref #8281 and E+M import (additional attributes in TeamOrPersonBase, Reference and TaxonNode)

4 years agoref #5448 adapt parser to recognize old ranks like proles
Andreas Müller [Wed, 19 Jun 2019 10:17:37 +0000 (12:17 +0200)]
ref #5448 adapt parser to recognize old ranks like proles

4 years agoref #8369 SpecimenTypeDesignationDTO: adding missing getters and basing on TypedEntit...
Andreas Kohlbecker [Tue, 16 Jul 2019 13:16:30 +0000 (15:16 +0200)]
ref #8369 SpecimenTypeDesignationDTO: adding missing getters and basing on TypedEntityReference

4 years agoref #8365 removing parentheses from code + accession number - again, adapting test
Andreas Kohlbecker [Tue, 16 Jul 2019 11:36:19 +0000 (13:36 +0200)]
ref #8365 removing parentheses from code + accession number - again, adapting test

4 years agoignoring just the test() method in TaxonRelationshipsDTOTest
Andreas Kohlbecker [Tue, 16 Jul 2019 11:32:21 +0000 (13:32 +0200)]
ignoring just the test() method in TaxonRelationshipsDTOTest

4 years agoref #8365 removing parentheses from code + accession number - again
Andreas Kohlbecker [Tue, 16 Jul 2019 10:07:34 +0000 (12:07 +0200)]
ref #8365 removing parentheses from code + accession number - again

4 years agoRevert "ignoring TaxonRelationshipsDTOTest"
Andreas Kohlbecker [Fri, 12 Jul 2019 18:34:20 +0000 (20:34 +0200)]
Revert "ignoring TaxonRelationshipsDTOTest"

This reverts commit 18b443282498e7bdbccadf14a861f6b474825297.

4 years agoignoring TaxonRelationshipsDTOTest
Andreas Kohlbecker [Fri, 12 Jul 2019 16:45:18 +0000 (18:45 +0200)]
ignoring TaxonRelationshipsDTOTest

4 years agoimplemting TypeDesignationPortalController
Andreas Kohlbecker [Fri, 12 Jul 2019 15:33:45 +0000 (17:33 +0200)]
implemting TypeDesignationPortalController

4 years agoref #8365 putting parentheses back
Andreas Kohlbecker [Fri, 12 Jul 2019 15:32:42 +0000 (17:32 +0200)]
ref #8365 putting parentheses back

4 years agoref #8365 stripping collection code from accession number only if followed by whitespace
Andreas Kohlbecker [Fri, 12 Jul 2019 12:44:05 +0000 (14:44 +0200)]
ref #8365 stripping collection code from accession number only if followed by whitespace

4 years agoref #8283 Fix possible NPE when no media is attached to term
Patrick Plitzner [Fri, 12 Jul 2019 05:29:14 +0000 (07:29 +0200)]
ref #8283 Fix possible NPE when no media is attached to term

4 years agoref #8365 removing parentheses from code + accession number
Andreas Kohlbecker [Thu, 11 Jul 2019 16:11:44 +0000 (18:11 +0200)]
ref #8365 removing parentheses from code + accession number

4 years agoref #8365 stripping collection code from accession number in DerivedUnitFacadeCacheSt...
Andreas Kohlbecker [Thu, 11 Jul 2019 16:01:55 +0000 (18:01 +0200)]
ref #8365 stripping collection code from accession number in DerivedUnitFacadeCacheStrategy

4 years agoavoiding NPE
Andreas Kohlbecker [Thu, 11 Jul 2019 16:00:56 +0000 (18:00 +0200)]
avoiding NPE

4 years agoref #8283 Add media uuids to term dto
Patrick Plitzner [Thu, 11 Jul 2019 06:09:09 +0000 (08:09 +0200)]
ref #8283 Add media uuids to term dto

 - fix HQL response handling for left outer joins

5 years agominor in cdm light export
Katja Luther [Fri, 5 Jul 2019 21:04:50 +0000 (23:04 +0200)]
minor in cdm light export