Katja Luther [Tue, 1 Dec 2015 12:54:07 +0000 (13:54 +0100)]
changes for #4960 and #4959
Patrick Plitzner [Mon, 30 Nov 2015 13:48:24 +0000 (14:48 +0100)]
Show complete stacktrace in import report
Patrick Plitzner [Mon, 30 Nov 2015 13:25:57 +0000 (14:25 +0100)]
Fix counting of specimens created in ABCD import report
Patrick Plitzner [Wed, 25 Nov 2015 22:18:04 +0000 (23:18 +0100)]
Add convenience service methods to occurrence service
Patrick Plitzner [Mon, 30 Nov 2015 09:23:48 +0000 (10:23 +0100)]
Parse spatial data for gathering event in ABCD import #5169
Cherian Mathew [Wed, 25 Nov 2015 17:31:14 +0000 (18:31 +0100)]
Add load method for uuid lists
Patrick Plitzner [Wed, 25 Nov 2015 10:18:09 +0000 (11:18 +0100)]
Set Unit/Notes and Gathering/Notes in ABCD import #5168
Patrick Plitzner [Wed, 25 Nov 2015 06:44:44 +0000 (07:44 +0100)]
Import missing parameters for ggbn ABCD import
- some refactoring
Patrick Plitzner [Tue, 24 Nov 2015 15:02:59 +0000 (16:02 +0100)]
Fix import for max elevation
Katja Luther [Tue, 24 Nov 2015 12:42:04 +0000 (13:42 +0100)]
add the missing files
Katja Luther [Tue, 24 Nov 2015 11:44:41 +0000 (12:44 +0100)]
fix the term delete test
Katja Luther [Tue, 24 Nov 2015 08:44:41 +0000 (09:44 +0100)]
add LIKE to MatchMode #5391
Cherian Mathew [Mon, 23 Nov 2015 16:07:10 +0000 (17:07 +0100)]
Cleanup
Cherian Mathew [Mon, 23 Nov 2015 13:38:15 +0000 (14:38 +0100)]
#5338 Check monitor map for null key when getting value
Cherian Mathew [Fri, 20 Nov 2015 17:44:23 +0000 (18:44 +0100)]
#5000 Add new metadata service
Andreas Kohlbecker [Fri, 20 Nov 2015 13:03:39 +0000 (14:03 +0100)]
#4962 commenting performance measure print-out via System.err
Andreas Kohlbecker [Fri, 20 Nov 2015 12:52:51 +0000 (13:52 +0100)]
#4962 avoiding bean initialization in getChildNodesAtRank() as much as possible - performance improvement
Katja Luther [Thu, 19 Nov 2015 09:51:58 +0000 (10:51 +0100)]
revert chamges in MatchMode
Katja Luther [Thu, 19 Nov 2015 09:43:51 +0000 (10:43 +0100)]
revert chamges in MatchMode
Patrick Plitzner [Wed, 18 Nov 2015 14:10:23 +0000 (15:10 +0100)]
Fix typo
Patrick Plitzner [Wed, 18 Nov 2015 14:05:08 +0000 (15:05 +0100)]
Extended test for specimens associations
Patrick Plitzner [Wed, 18 Nov 2015 14:04:58 +0000 (15:04 +0100)]
Remove unused parameters
Patrick Plitzner [Wed, 18 Nov 2015 11:24:45 +0000 (12:24 +0100)]
Add test for all possible specimen associations
Andreas Kohlbecker [Wed, 18 Nov 2015 09:55:18 +0000 (10:55 +0100)]
#4313 relationship type as additinal filter option for TaxonNodeAgentRelation services
Patrick Plitzner [Tue, 17 Nov 2015 15:32:20 +0000 (16:32 +0100)]
Add new service method listDerminationEvents to occurrence service which
lists all determination events that contain the given specimen
Patrick Plitzner [Tue, 17 Nov 2015 14:29:30 +0000 (15:29 +0100)]
Check for names and synonymy when checking specimen determinations
Patrick Plitzner [Tue, 17 Nov 2015 14:28:54 +0000 (15:28 +0100)]
Add java doc
Andreas Müller [Tue, 17 Nov 2015 15:09:18 +0000 (16:09 +0100)]
Clean up BeanInitNode embeddable issues #5383
Andreas Müller [Tue, 17 Nov 2015 14:52:35 +0000 (15:52 +0100)]
Fix bug for embeddable classes in AdvancedBeanInitializer #5383
Andreas Kohlbecker [Tue, 17 Nov 2015 13:58:59 +0000 (14:58 +0100)]
#4313 implementing full stack of methods to expose TaxonNodeAgentRelations throught the AgentController with filter options
Katja Luther [Tue, 17 Nov 2015 13:46:25 +0000 (14:46 +0100)]
fixing #4878
Patrick Plitzner [Tue, 17 Nov 2015 12:29:10 +0000 (13:29 +0100)]
Fix associated specimen retrieval for name determination
- added test
Patrick Plitzner [Tue, 17 Nov 2015 11:55:53 +0000 (12:55 +0100)]
Fix copy&paste error
Patrick Plitzner [Tue, 17 Nov 2015 11:35:42 +0000 (12:35 +0100)]
Fix failing tests
- adapted to new return type
Patrick Plitzner [Tue, 17 Nov 2015 10:47:24 +0000 (11:47 +0100)]
Extend service methods to retrieve specimens that are determiined as a
taxon name
Patrick Plitzner [Tue, 17 Nov 2015 09:50:05 +0000 (10:50 +0100)]
When retrieving associated specimens retrieve all
IndividualsAssocations, TypeDesignation, Determinations
Patrick Plitzner [Tue, 17 Nov 2015 09:48:21 +0000 (10:48 +0100)]
Add javadoc
Patrick Plitzner [Mon, 16 Nov 2015 15:42:40 +0000 (16:42 +0100)]
Remove failing legacy test
Patrick Plitzner [Wed, 11 Nov 2015 17:37:33 +0000 (18:37 +0100)]
Refactored import return type from boolean to ImportResult
Patrick Plitzner [Wed, 11 Nov 2015 17:14:14 +0000 (18:14 +0100)]
Move import report to import state super class
Andreas Kohlbecker [Mon, 16 Nov 2015 13:59:50 +0000 (14:59 +0100)]
#4313 introducing AgentPortalController
Andreas Kohlbecker [Fri, 13 Nov 2015 19:57:11 +0000 (20:57 +0100)]
#4313 implementing full stack of methods to expose TaxonNodeAgentRelations via remote controllers
Andreas Kohlbecker [Fri, 13 Nov 2015 19:55:56 +0000 (20:55 +0100)]
using long value for count in pager & easier access to utilty method
Katja Luther [Mon, 16 Nov 2015 12:25:49 +0000 (13:25 +0100)]
minor
Katja Luther [Mon, 16 Nov 2015 12:23:30 +0000 (13:23 +0100)]
fix merge description into another description
Andreas Kohlbecker [Thu, 12 Nov 2015 14:16:58 +0000 (15:16 +0100)]
#2273 removing HACK: hardcoded distribution status colors for cyprus a no longer needed
Andreas Kohlbecker [Thu, 5 Nov 2015 09:17:07 +0000 (10:17 +0100)]
removing obsoltete version definition in submodule pom.xml
Patrick Plitzner [Wed, 11 Nov 2015 09:38:44 +0000 (10:38 +0100)]
Add orphanRemoval to SingleReadAlignment set of Sequence #5200
Patrick Plitzner [Tue, 10 Nov 2015 11:33:36 +0000 (12:33 +0100)]
Add UUID delete method to occurrence service #5200
Katja Luther [Tue, 10 Nov 2015 11:34:37 +0000 (12:34 +0100)]
fixing #5303
Katja Luther [Tue, 10 Nov 2015 11:30:09 +0000 (12:30 +0100)]
fixing #5303
Patrick Plitzner [Tue, 10 Nov 2015 10:50:43 +0000 (11:50 +0100)]
Fix sequence and single read deletion #5200
- adapted tests
Patrick Plitzner [Tue, 10 Nov 2015 07:06:12 +0000 (08:06 +0100)]
Add test for deleting SingleRead that is attached to multpile seuqences
#5200
Patrick Plitzner [Mon, 9 Nov 2015 16:54:10 +0000 (17:54 +0100)]
Set singleRead to null when removing SingleReadAlignment from sequence
to avoid "object would be re-saved" #5200
Patrick Plitzner [Mon, 9 Nov 2015 16:13:50 +0000 (17:13 +0100)]
added DAO for SingleReads #5200
Patrick Plitzner [Mon, 9 Nov 2015 07:29:21 +0000 (08:29 +0100)]
Added test for taxon (name) <-> specimen association
k.luther [Tue, 10 Nov 2015 08:41:34 +0000 (09:41 +0100)]
Revert "accept the change from a number to null in TimePeriod fields #5319"
This reverts commit
a3960fa7c279f2aa9fafbefde098c529e269d382.
Katja Luther [Mon, 9 Nov 2015 11:22:22 +0000 (12:22 +0100)]
clean up csvNameExport
Katja Luther [Thu, 5 Nov 2015 13:55:29 +0000 (14:55 +0100)]
fixing cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/config/FeatureNodeDeletionConfigurator.java
Katja Luther [Thu, 5 Nov 2015 11:09:23 +0000 (12:09 +0100)]
fix #5341 and fixing deletion of specimen
Katja Luther [Tue, 3 Nov 2015 10:40:00 +0000 (11:40 +0100)]
new nodeDeletionConfiguator to fit for taxonnode and feature node deletion
Patrick Plitzner [Tue, 3 Nov 2015 10:59:01 +0000 (11:59 +0100)]
Evaluate publish flag in portal controller
Patrick Plitzner [Tue, 3 Nov 2015 10:09:14 +0000 (11:09 +0100)]
Return type designations with associated taxa
Patrick Plitzner [Tue, 3 Nov 2015 10:07:35 +0000 (11:07 +0100)]
Fix return type
Katja Luther [Mon, 2 Nov 2015 12:54:01 +0000 (13:54 +0100)]
#5318
Cherian Mathew [Fri, 30 Oct 2015 09:15:12 +0000 (10:15 +0100)]
#5297 Move monitor thread api to super interface, Implement monitor feedback timeout
#5297 Add monitor feedback timeout, Cleanup code
Cherian Mathew [Fri, 30 Oct 2015 09:16:35 +0000 (10:16 +0100)]
Add datasource for unit tests to launch configuration
Cherian Mathew [Thu, 29 Oct 2015 11:09:49 +0000 (12:09 +0100)]
#5297 Make result, feedback objects in remoting monitor serializable, Update test service with monitor feedback
Patrick Plitzner [Thu, 29 Oct 2015 11:59:45 +0000 (12:59 +0100)]
Fix NPE in test
Patrick Plitzner [Wed, 28 Oct 2015 16:07:24 +0000 (17:07 +0100)]
Return correct match strategy #5337
Patrick Plitzner [Wed, 28 Oct 2015 07:09:21 +0000 (08:09 +0100)]
Fix typo
Patrick Plitzner [Tue, 27 Oct 2015 17:23:29 +0000 (18:23 +0100)]
Add amplificatiion ressult to updated objects when deleting a single
read
Cherian Mathew [Wed, 28 Oct 2015 14:22:00 +0000 (15:22 +0100)]
Merge branch 'ticket-5297' into develop
Cherian Mathew [Wed, 28 Oct 2015 12:24:29 +0000 (13:24 +0100)]
#5297 Add cancel and waitForFeedback functionality
Correct work units
Patrick Plitzner [Wed, 28 Oct 2015 10:53:15 +0000 (11:53 +0100)]
Fix moving of derivatives with null parent (+test)
Katja Luther [Wed, 28 Oct 2015 08:35:11 +0000 (09:35 +0100)]
fix #5104 and #5328
Cherian Mathew [Wed, 14 Oct 2015 16:11:36 +0000 (18:11 +0200)]
#5297 Refactor ProgressMonitorController, Add Remoting Progress monitor
#5297 Add progress monitor service, Add test services
#5297 Add monit import method
#5297 Update no. of work units
#5297 Add new thread class for remoting monitors
#5297 Add owner field to monitor thread and user checks in service
#5297 Add javadoc
Patrick Plitzner [Tue, 27 Oct 2015 14:08:47 +0000 (15:08 +0100)]
Allow null for parent when moving derivatives
Cherian Mathew [Mon, 26 Oct 2015 17:14:41 +0000 (18:14 +0100)]
#5349 Add http invoker service config files to cdmlib-ext (for editgeo service) and cdmlib-io (currenlty empty)
Cherian Mathew [Mon, 26 Oct 2015 14:58:22 +0000 (15:58 +0100)]
#5350 : Add getTaxonNodeUuidAndTitleCacheOfAcceptedTaxaByClassification method with uuid as argument
Andreas Müller [Mon, 26 Oct 2015 14:07:42 +0000 (15:07 +0100)]
Minor cleanup
Patrick Plitzner [Mon, 26 Oct 2015 13:20:54 +0000 (14:20 +0100)]
Fix NPE in ABCD import collection matching
- also added for-loop break
Patrick Plitzner [Mon, 26 Oct 2015 12:36:06 +0000 (13:36 +0100)]
Add stack trace to import report
Andreas Müller [Fri, 23 Oct 2015 08:20:50 +0000 (10:20 +0200)]
Revert throwing of exception for invalid property path #5077
Andreas Müller [Thu, 22 Oct 2015 15:02:14 +0000 (17:02 +0200)]
Fix test in dataportal with strict bean initalization #5077
Andreas Müller [Thu, 22 Oct 2015 13:55:33 +0000 (15:55 +0200)]
Add test to ensure bean initialization works on hibernate proxies #5077
Andreas Müller [Thu, 22 Oct 2015 13:53:45 +0000 (15:53 +0200)]
Fix property path in CsvNameExport #5344
Katja Luther [Thu, 22 Oct 2015 11:13:03 +0000 (13:13 +0200)]
fix #5330
Katja Luther [Thu, 22 Oct 2015 10:33:12 +0000 (12:33 +0200)]
Katja Luther [Thu, 22 Oct 2015 10:21:32 +0000 (12:21 +0200)]
minor
Katja Luther [Thu, 22 Oct 2015 09:53:45 +0000 (11:53 +0200)]
fix csv export
Andreas Müller [Wed, 21 Oct 2015 15:36:40 +0000 (17:36 +0200)]
Fix AdvancedBeanInitializer for envers collections/maps #5077
Andreas Müller [Wed, 21 Oct 2015 13:30:45 +0000 (15:30 +0200)]
minor
Andreas Müller [Wed, 21 Oct 2015 12:57:33 +0000 (14:57 +0200)]
Throw exceptions in AdvancedBeanInitializer instead of logging only
#5077
Andreas Müller [Wed, 21 Oct 2015 12:41:48 +0000 (14:41 +0200)]
Add some more BeanUtil test to other classes #5307
Andreas Müller [Wed, 21 Oct 2015 12:15:10 +0000 (14:15 +0200)]
Fix bean read/write inconsistency in Taxon and TaxonBase #5307
Katja Luther [Wed, 21 Oct 2015 07:42:38 +0000 (09:42 +0200)]
minor
Cherian Mathew [Tue, 20 Oct 2015 13:36:57 +0000 (15:36 +0200)]
Add os dependent file separator
Cherian Mathew [Tue, 20 Oct 2015 13:13:14 +0000 (15:13 +0200)]
Revert back early commit since it breaks jetty tests
Katja Luther [Tue, 20 Oct 2015 12:05:13 +0000 (14:05 +0200)]
fix the pom of remote-webapp for windows