-// $Id$
-/**
- * Copyright (C) 2007 EDIT
- * European Distributed Institute of Taxonomy
- * http://www.e-taxonomy.eu
- *
- * The contents of this file are subject to the Mozilla Public License Version 1.1
- * See LICENSE.TXT at the top of this package for the full license terms.
- */
-
-package eu.etaxonomy.cdm.api.application;
+// $Id$\r
+/**\r
+ * Copyright (C) 2007 EDIT\r
+ * European Distributed Institute of Taxonomy\r
+ * http://www.e-taxonomy.eu\r
+ *\r
+ * The contents of this file are subject to the Mozilla Public License Version 1.1\r
+ * See LICENSE.TXT at the top of this package for the full license terms.\r
+ */\r
+\r
+package eu.etaxonomy.cdm.api.application;\r
+\r
import java.util.EnumSet;
import java.util.List;
import java.util.UUID;
import eu.etaxonomy.cdm.api.service.IOccurrenceService;
import eu.etaxonomy.cdm.api.service.IPolytomousKeyNodeService;
import eu.etaxonomy.cdm.api.service.IPolytomousKeyService;
+import eu.etaxonomy.cdm.api.service.IProgressMonitorService;
import eu.etaxonomy.cdm.api.service.IReferenceService;
import eu.etaxonomy.cdm.api.service.IService;
import eu.etaxonomy.cdm.api.service.ITaxonNodeService;
import eu.etaxonomy.cdm.model.common.DefinedTermBase;
import eu.etaxonomy.cdm.persistence.hibernate.permission.CRUD;
import eu.etaxonomy.cdm.persistence.hibernate.permission.ICdmPermissionEvaluator;
+\r
+/**\r
+ * @author a.mueller\r
+ */\r
+public class CdmApplicationController implements ICdmApplicationConfiguration {\r
+ private static final Logger logger = Logger.getLogger(CdmApplicationController.class);\r
+\r
+ public static final String DEFAULT_APPLICATION_CONTEXT_RESOURCE = "/eu/etaxonomy/cdm/defaultApplicationContext.xml";\r
+\r
+ public AbstractApplicationContext applicationContext;\r
+ protected ICdmApplicationConfiguration configuration;\r
+ private final Resource applicationContextResource;\r
+\r
+ private final IProgressMonitor progressMonitor;\r
+\r
+ final protected static DbSchemaValidation defaultDbSchemaValidation = DbSchemaValidation.VALIDATE;\r
+\r
+\r
+ /**\r
+ * Constructor, opens a spring ApplicationContext by using the default data source\r
+ *\r
+ * @throws DataSourceNotFoundException\r
+ */\r
+ public static CdmApplicationController NewInstance() throws DataSourceNotFoundException{\r
+ logger.info("Start CdmApplicationController with default data source");\r
+ CdmPersistentDataSource dataSource = getDefaultDatasource();\r
+ DbSchemaValidation dbSchemaValidation = defaultDbSchemaValidation;\r
+ return CdmApplicationController.NewInstance(null, dataSource, dbSchemaValidation, false);\r
+ }\r
+\r
+\r
+ /**\r
+ * Constructor, opens a spring ApplicationContext by using the default data source\r
+ *\r
+ * @param dbSchemaValidation\r
+ * validation type for database schema\r
+ * @throws DataSourceNotFoundException\r
+ */\r
+ public static CdmApplicationController NewInstance(DbSchemaValidation dbSchemaValidation) throws DataSourceNotFoundException{\r
+ logger.info("Start CdmApplicationController with default data source");\r
+ CdmPersistentDataSource dataSource = getDefaultDatasource();\r
+ return CdmApplicationController.NewInstance(null, dataSource, dbSchemaValidation, false);\r
+ }\r
+\r
+\r
+ /**\r
+ * Constructor, opens an spring ApplicationContext by using the according data source\r
+ * and the default database schema validation type\r
+ *\r
+ * @param dataSource\r
+ */\r
+ public static CdmApplicationController NewInstance(ICdmDataSource dataSource){\r
+ return CdmApplicationController.NewInstance(null, dataSource, defaultDbSchemaValidation, false);\r
+ }\r
+\r
+\r
+ public static CdmApplicationController NewInstance(ICdmDataSource dataSource, DbSchemaValidation dbSchemaValidation){\r
+ return CdmApplicationController.NewInstance(null, dataSource, dbSchemaValidation, false);\r
+ }\r
+\r
+\r
+ public static CdmApplicationController NewInstance(ICdmDataSource dataSource, DbSchemaValidation dbSchemaValidation, boolean omitTermLoading){\r
+ return CdmApplicationController.NewInstance(null, dataSource, dbSchemaValidation, omitTermLoading);\r
+ }\r
+\r
+ public static CdmApplicationController NewInstance(Resource applicationContextResource, ICdmDataSource dataSource,\r
+ DbSchemaValidation dbSchemaValidation, boolean omitTermLoading){\r
+ return CdmApplicationController.NewInstance(applicationContextResource, dataSource, dbSchemaValidation, omitTermLoading, null);\r
+ }\r
+\r
+ public static CdmApplicationController NewInstance(Resource applicationContextResource, ICdmDataSource dataSource,\r
+ DbSchemaValidation dbSchemaValidation, boolean omitTermLoading, IProgressMonitor progressMonitor){\r
+ return new CdmApplicationController(applicationContextResource, dataSource, dbSchemaValidation, omitTermLoading, progressMonitor, null);\r
+ }\r
+\r
+\r
+ //TODO discuss need for listeners before commit to trunk\r
+ // public static CdmApplicationController NewInstance(Resource applicationContextResource, ICdmDataSource dataSource, DbSchemaValidation dbSchemaValidation, boolean omitTermLoading, IProgressMonitor progressMonitor, List<ApplicationListener> listeners) {\r
+ // return new CdmApplicationController(applicationContextResource, dataSource, dbSchemaValidation, omitTermLoading, progressMonitor,listeners);\r
+ // }\r
+\r
+ /**\r
+ * @return\r
+ */\r
+ protected static ClassPathResource getClasspathResource(){\r
+ return new ClassPathResource(DEFAULT_APPLICATION_CONTEXT_RESOURCE);\r
+ }\r
+\r
+\r
+ /**\r
+ * @return\r
+ * @throws DataSourceNotFoundException\r
+ */\r
+ protected static CdmPersistentDataSource getDefaultDatasource() throws DataSourceNotFoundException{\r
+ CdmPersistentDataSource dataSource = CdmPersistentDataSource.NewDefaultInstance();\r
+ return dataSource;\r
+ }\r
+\r
+\r
+ /**\r
+ *\r
+ * FIXME:Remoting this constructor is added only to allow extension of this cntroller\r
+ * class. and should be removed after refactoring\r
+ */\r
+ protected CdmApplicationController(){\r
+ applicationContextResource = null;\r
+ progressMonitor = null;\r
+ }\r
+\r
+\r
+ /**\r
+ * Constructor, opens an spring 2.5 ApplicationContext by using the according data\r
+ * source\r
+ *\r
+ * @param dataSource\r
+ * @param dbSchemaValidation\r
+ * @param omitTermLoading\r
+ */\r
+ protected CdmApplicationController(Resource applicationContextResource, ICdmDataSource dataSource, DbSchemaValidation dbSchemaValidation,\r
+ boolean omitTermLoading, IProgressMonitor progressMonitor, List<ApplicationListener> listeners){\r
+ logger.info("Start CdmApplicationController with datasource: " + dataSource.getName());\r
+\r
+ if (dbSchemaValidation == null) {\r
+ dbSchemaValidation = defaultDbSchemaValidation;\r
+ }\r
+ this.applicationContextResource = applicationContextResource != null ? applicationContextResource : getClasspathResource();\r
+ this.progressMonitor = progressMonitor != null ? progressMonitor : new NullProgressMonitor();\r
+\r
+ setNewDataSource(dataSource, dbSchemaValidation, omitTermLoading, listeners);\r
+ }\r
+\r
+\r
+ /**\r
+ * Sets the application context to a new spring ApplicationContext by using the\r
+ * according data source and initializes the Controller.\r
+ *\r
+ * @param dataSource\r
+ */\r
+ private boolean setNewDataSource(ICdmDataSource dataSource, DbSchemaValidation dbSchemaValidation, boolean omitTermLoading,\r
+ List<ApplicationListener> listeners){\r
+\r
+ if (dbSchemaValidation == null) {\r
+ dbSchemaValidation = defaultDbSchemaValidation;\r
+ }\r
+ logger.info("Connecting to '" + dataSource.getName() + "'");\r
+\r
+ MonitoredGenericApplicationContext applicationContext = new MonitoredGenericApplicationContext();\r
+ int refreshTasks = 45;\r
+ int nTasks = 5 + refreshTasks;\r
+ // nTasks += applicationContext.countTasks();\r
+ progressMonitor.beginTask("Connecting to '" + dataSource.getName() + "'", nTasks);\r
+\r
+ // progressMonitor.worked(1);\r
+\r
+ BeanDefinition datasourceBean = dataSource.getDatasourceBean();\r
+ datasourceBean.setAttribute("isLazy", false);\r
+ progressMonitor.subTask("Registering datasource.");\r
+ applicationContext.registerBeanDefinition("dataSource", datasourceBean);\r
+ progressMonitor.worked(1);\r
+\r
+ BeanDefinition hibernatePropBean = dataSource.getHibernatePropertiesBean(dbSchemaValidation);\r
+ applicationContext.registerBeanDefinition("hibernateProperties", hibernatePropBean);\r
+\r
+ XmlBeanDefinitionReader xmlReader = new XmlBeanDefinitionReader(applicationContext);\r
+ progressMonitor.subTask("Registering resources.");\r
+ xmlReader.loadBeanDefinitions(applicationContextResource);\r
+ progressMonitor.worked(1);\r
+\r
+ //omitTerms\r
+ if (omitTermLoading == true) {\r
+ String initializerName = "persistentTermInitializer";\r
+ BeanDefinition beanDef = applicationContext.getBeanDefinition(initializerName);\r
+ MutablePropertyValues values = beanDef.getPropertyValues();\r
+ values.addPropertyValue("omit", omitTermLoading);\r
+ }\r
+\r
+ if (listeners != null) {\r
+ for (ApplicationListener listener : listeners) {\r
+ applicationContext.addApplicationListener(listener);\r
+ }\r
+ }\r
+\r
+ // String message = "Start application context. This might take a while ...";\r
+ //// progressMonitor.subTask(message);\r
+ // SubProgressMonitor subMonitor= new SubProgressMonitor(progressMonitor, 10);\r
+ // subMonitor.beginTask(message, 2);\r
+ // applicationContext.setProgressMonitor(subMonitor);\r
+\r
+ applicationContext.refresh(new SubProgressMonitor(progressMonitor, refreshTasks));\r
+ applicationContext.start();\r
+ // progressMonitor.worked(1);\r
+\r
+ progressMonitor.subTask("Cleaning up.");\r
+ setApplicationContext(applicationContext);\r
+ progressMonitor.worked(1);\r
+\r
+ progressMonitor.done();\r
+ return true;\r
+ }\r
+\r
+\r
+ /**\r
+ * Tests if some DefinedTermsAreMissing.\r
+ *\r
+ * @return true, if at least one is missing, else false\r
+ */\r
+ public boolean testDefinedTermsAreMissing(){\r
+ UUID englishUuid = UUID.fromString("e9f8cdb7-6819-44e8-95d3-e2d0690c3523");\r
+ DefinedTermBase<?> english = this.getTermService().load(englishUuid);\r
+ if (english == null || !english.getUuid().equals(englishUuid)) {\r
+ return true;\r
+ }\r
+ else {\r
+ return false;\r
+ }\r
+ }\r
+\r
+\r
+ /**\r
+ * Changes the ApplicationContext to the new dataSource\r
+ *\r
+ * @param dataSource\r
+ */\r
+ public boolean changeDataSource(ICdmDataSource dataSource){\r
+ //logger.info("Change datasource to : " + dataSource);\r
+ return setNewDataSource(dataSource, DbSchemaValidation.VALIDATE, false, null);\r
+ }\r
+\r
+\r
+ /**\r
+ * Changes the ApplicationContext to the new dataSource\r
+ *\r
+ * @param dataSource\r
+ * @param dbSchemaValidation\r
+ */\r
+ public boolean changeDataSource(ICdmDataSource dataSource, DbSchemaValidation dbSchemaValidation){\r
+ //logger.info("Change datasource to : " + dataSource);\r
+ return setNewDataSource(dataSource, dbSchemaValidation, false, null);\r
+ }\r
+\r
+\r
+ /**\r
+ * Changes the ApplicationContext to the new dataSource\r
+ *\r
+ * @param dataSource\r
+ * @param dbSchemaValidation\r
+ * @param omitTermLoading\r
+ */\r
+ public boolean changeDataSource(ICdmDataSource dataSource, DbSchemaValidation dbSchemaValidation, boolean omitTermLoading){\r
+ logger.info("Change datasource to : " + dataSource);\r
+ return setNewDataSource(dataSource, dbSchemaValidation, omitTermLoading, null);\r
+ }\r
+\r
+\r
+ /**\r
+ * Changes the ApplicationContext to the new dataSource\r
+ *\r
+ * @param dataSource\r
+ * @param dbSchemaValidation\r
+ * @param omitTermLoading\r
+ */\r
+ public boolean changeDataSource(ICdmDataSource dataSource, DbSchemaValidation dbSchemaValidation, boolean omitTermLoading,\r
+ List<ApplicationListener> listeners){\r
+ logger.info("Change datasource to : " + dataSource);\r
+ return setNewDataSource(dataSource, dbSchemaValidation, omitTermLoading, listeners);\r
+ }\r
+\r
+\r
+ /**\r
+ * Sets a new application Context.\r
+ *\r
+ * @param ac\r
+ */\r
+ public void setApplicationContext(AbstractApplicationContext ac){\r
+ closeApplicationContext(); //closes old application context if necessary\r
+ applicationContext = ac;\r
+ applicationContext.registerShutdownHook();\r
+ init();\r
+ }\r
+\r
+\r
+ /*\r
+ * (non-Javadoc)\r
+ *\r
+ * @see java.lang.Object#finalize()\r
+ */\r
+ @Override\r
+ public void finalize(){\r
+ close();\r
+ }\r
+\r
+\r
+ /**\r
+ * closes the application\r
+ */\r
+ public void close(){\r
+ closeApplicationContext();\r
+ }\r
+\r
+\r
+ /**\r
+ * closes the application context\r
+ */\r
+ protected void closeApplicationContext(){\r
+ if (applicationContext != null) {\r
+ logger.info("Close ApplicationContext");\r
+ applicationContext.close();\r
+ }\r
+ }\r
+\r
+\r
+ protected void init(){\r
+ logger.debug("Init " + this.getClass().getName() + " ... ");\r
+ if (logger.isDebugEnabled()) {\r
+ for (String beanName : applicationContext.getBeanDefinitionNames()) {\r
+ logger.debug(beanName);\r
+ }\r
+ }\r
+ //TODO delete next row (was just for testing)\r
+ if (logger.isInfoEnabled()) {\r
+ logger.info("Registered Beans: ");\r
+ String[] beanNames = applicationContext.getBeanDefinitionNames();\r
+ for (String beanName : beanNames) {\r
+ logger.info(beanName);\r
+ }\r
+ }\r
+ configuration = (ICdmApplicationConfiguration) applicationContext.getBean("cdmApplicationDefaultConfiguration");\r
+ try {\r
+ //FIXME:Remoting catching exection to allow for remoting\r
+ getDatabaseService().setApplicationController(this);\r
+ }\r
+ catch (UnsupportedOperationException uoe) {\r
+ logger.warn("getDatabaseService() is not implmented for current application context");\r
+ }\r
+ }\r
+\r
+\r
+ /* ****** Services ******** */\r
+ @Override\r
+ public final IAnnotationService getAnnotationService(){\r
+ return configuration.getAnnotationService();\r
+ }\r
+\r
+ @Override\r
+ public final INameService getNameService(){\r
+ return configuration.getNameService();\r
+ }\r
+\r
+\r
+ @Override\r
+ public final ITaxonService getTaxonService(){\r
+ return configuration.getTaxonService();\r
+ }\r
+\r
+\r
+ @Override\r
+ public final IClassificationService getClassificationService(){\r
+ return configuration.getClassificationService();\r
+ }\r
+\r
+\r
+ @Override\r
+ public final ITaxonNodeService getTaxonNodeService(){\r
+ return configuration.getTaxonNodeService();\r
+ }\r
+\r
+\r
+ @Override\r
+ public final IReferenceService getReferenceService(){\r
+ return configuration.getReferenceService();\r
+ }\r
+\r
+\r
+ @Override\r
+ public final IAgentService getAgentService(){\r
+ return configuration.getAgentService();\r
+ }\r
+\r
+\r
+ @Override\r
+ public final IDatabaseService getDatabaseService(){\r
+ return configuration.getDatabaseService();\r
+ }\r
+\r
+\r
+ @Override\r
+ public final ITermService getTermService(){\r
+ return configuration.getTermService();\r
+ }\r
+\r
+\r
+ @Override\r
+ public final IDescriptionService getDescriptionService(){\r
+ return configuration.getDescriptionService();\r
+ }\r
+\r
+\r
+ @Override\r
+ public final IOccurrenceService getOccurrenceService(){\r
+ return configuration.getOccurrenceService();\r
+ }\r
+\r
+ @Override\r
+ public IAmplificationService getAmplificationService(){\r
+ return configuration.getAmplificationService();\r
+ }\r
+\r
+ @Override\r
+ public ISequenceService getSequenceService(){\r
+ return configuration.getSequenceService();\r
+ }\r
+\r
+\r
+ @Override\r
+ public final IPrimerService getPrimerService(){\r
+ return configuration.getPrimerService();\r
+ }\r
+\r
+\r
+ @Override\r
+ public final IMediaService getMediaService(){\r
+ return configuration.getMediaService();\r
+ }\r
+\r
+\r
+ @Override\r
+ public final ICommonService getCommonService(){\r
+ return configuration.getCommonService();\r
+ }\r
+\r
+\r
+ @Override\r
+ public final ILocationService getLocationService(){\r
+ return configuration.getLocationService();\r
+ }\r
+\r
+\r
+ @Override\r
+ public final IUserService getUserService(){\r
+ return configuration.getUserService();\r
+ }\r
+\r
+\r
+ @Override\r
+ public final IGrantedAuthorityService getGrantedAuthorityService(){\r
+ return configuration.getGrantedAuthorityService();\r
+ }\r
+\r
+\r
+ @Override\r
+ public IGroupService getGroupService(){\r
+ return configuration.getGroupService();\r
+ }\r
+\r
+\r
+ @Override\r
+ public final ICollectionService getCollectionService(){\r
+ return configuration.getCollectionService();\r
+ }\r
+\r
+\r
+ @Override\r
+ public final IFeatureTreeService getFeatureTreeService(){\r
+ return configuration.getFeatureTreeService();\r
+ }\r
+\r
+\r
+ @Override\r
+ public final IFeatureNodeService getFeatureNodeService(){\r
+ return configuration.getFeatureNodeService();\r
+ }\r
+\r
+\r
+ @Override\r
+ public final IVocabularyService getVocabularyService(){\r
+ return configuration.getVocabularyService();\r
+ }\r
+\r
+\r
+ @Override\r
+ public final IIdentificationKeyService getIdentificationKeyService(){\r
+ return configuration.getIdentificationKeyService();\r
+ }\r
+\r
+\r
+ @Override\r
+ public final IPolytomousKeyService getPolytomousKeyService(){\r
+ return configuration.getPolytomousKeyService();\r
+ }\r
+\r
+\r
+ @Override\r
+ public final IPolytomousKeyNodeService getPolytomousKeyNodeService(){\r
+ return configuration.getPolytomousKeyNodeService();\r
+ }\r
+\r
+\r
+ /**\r
+ * {@inheritDoc}\r
+ */\r
+ @Override\r
+ public IProgressMonitorService getProgressMonitorService() {\r
+ return configuration.getProgressMonitorService();\r
+ }\r
+\r
+\r
+ @Override\r
+ public IEntityValidationService getEntityValidationService(){\r
+ return configuration.getEntityValidationService();\r
+ }\r
+\r
+\r
+ @Override\r
+ public IEntityConstraintViolationService getEntityConstraintViolationService(){\r
+ return configuration.getEntityConstraintViolationService();\r
+ }\r
+\r
+\r
+ @Override\r
+ public final IService<CdmBase> getMainService(){\r
+ return configuration.getMainService();\r
+ }\r
+\r
+\r
+ @Override\r
+ public final IWorkingSetService getWorkingSetService(){\r
+ return configuration.getWorkingSetService();\r
+ }\r
+\r
+\r
+ @Override\r
+ public final ConversationHolder NewConversation(){\r
+ //return (ConversationHolder)applicationContext.getBean("conversationHolder");\r
+ return configuration.NewConversation();\r
+ }\r
+\r
+\r
+ /* **** Security ***** */\r
+\r
+ @Override\r
+ public void authenticate(String username, String password){\r
+ UsernamePasswordAuthenticationToken tokenForUser = new UsernamePasswordAuthenticationToken(username, password);\r
+ Authentication authentication = this.getAuthenticationManager().authenticate(tokenForUser);\r
+ SecurityContext context = SecurityContextHolder.getContext();\r
+ context.setAuthentication(authentication);\r
+ }\r
+\r
+ @Override\r
+ public final ProviderManager getAuthenticationManager(){\r
+ return configuration.getAuthenticationManager();\r
+ }\r
+\r
+\r
+ @Override\r
+ public ICdmPermissionEvaluator getPermissionEvaluator(){\r
+ return configuration.getPermissionEvaluator();\r
+ }\r
+\r
+ /**\r
+ * @see org.springframework.security.access.PermissionEvaluator#hasPermission(org.springframework.security.core.Authentication,\r
+ * java.lang.Object, java.lang.Object)\r
+ *\r
+ * @param targetDomainObject\r
+ * @param permission\r
+ * @return\r
+ */\r
+ public boolean currentAuthentiationHasPermissions(CdmBase targetDomainObject, EnumSet<CRUD> permission){\r
+ SecurityContext context = SecurityContextHolder.getContext();\r
+ return getPermissionEvaluator().hasPermission(context.getAuthentication(), targetDomainObject, permission);\r
+ }\r
+\r
+\r
+ @Override\r
+ public final PlatformTransactionManager getTransactionManager(){\r
+ return configuration.getTransactionManager();\r
+ }\r
+\r
+\r
+ @Override\r
+ public final Object getBean(String name){\r
+ return this.applicationContext.getBean(name);\r
+ }\r
+\r
+\r
+ /*\r
+ * OLD TRANSACTION STUFF\r
+ */\r
+\r
+ /* **** flush ********** */\r
+ public void flush(){\r
+ SessionFactory sf = (SessionFactory) applicationContext.getBean("sessionFactory");\r
+ sf.getCurrentSession().flush();\r
+ }\r
+\r
+\r
+ public SessionFactory getSessionFactory(){\r
+ return (SessionFactory) applicationContext.getBean("sessionFactory");\r
+ }\r
+\r
+\r
+ @Override\r
+ public TransactionStatus startTransaction(){\r
+ return startTransaction(false);\r
+ }\r
+\r
+\r
+ @Override\r
+ public TransactionStatus startTransaction(Boolean readOnly){\r
+ return configuration.startTransaction(readOnly);\r
+ }\r
+\r
+ @Override\r
+ public void commitTransaction(TransactionStatus txStatus){\r
+ PlatformTransactionManager txManager = configuration.getTransactionManager();\r
+ txManager.commit(txStatus);\r
+ return;\r
+ }\r
+\r
+}\r
-/**
- * @author a.mueller
- */
-public class CdmApplicationController implements ICdmApplicationConfiguration {
- private static final Logger logger = Logger.getLogger(CdmApplicationController.class);
-
- public static final String DEFAULT_APPLICATION_CONTEXT_RESOURCE = "/eu/etaxonomy/cdm/defaultApplicationContext.xml";
-
- public AbstractApplicationContext applicationContext;
- protected ICdmApplicationConfiguration configuration;
- private final Resource applicationContextResource;
-
- private final IProgressMonitor progressMonitor;
-
- final protected static DbSchemaValidation defaultDbSchemaValidation = DbSchemaValidation.VALIDATE;
-
-
- /**
- * Constructor, opens a spring ApplicationContext by using the default data source
- *
- * @throws DataSourceNotFoundException
- */
- public static CdmApplicationController NewInstance() throws DataSourceNotFoundException{
- logger.info("Start CdmApplicationController with default data source");
- CdmPersistentDataSource dataSource = getDefaultDatasource();
- DbSchemaValidation dbSchemaValidation = defaultDbSchemaValidation;
- return CdmApplicationController.NewInstance(null, dataSource, dbSchemaValidation, false);
- }
-
-
- /**
- * Constructor, opens a spring ApplicationContext by using the default data source
- *
- * @param dbSchemaValidation
- * validation type for database schema
- * @throws DataSourceNotFoundException
- */
- public static CdmApplicationController NewInstance(DbSchemaValidation dbSchemaValidation) throws DataSourceNotFoundException{
- logger.info("Start CdmApplicationController with default data source");
- CdmPersistentDataSource dataSource = getDefaultDatasource();
- return CdmApplicationController.NewInstance(null, dataSource, dbSchemaValidation, false);
- }
-
-
- /**
- * Constructor, opens an spring ApplicationContext by using the according data source
- * and the default database schema validation type
- *
- * @param dataSource
- */
- public static CdmApplicationController NewInstance(ICdmDataSource dataSource){
- return CdmApplicationController.NewInstance(null, dataSource, defaultDbSchemaValidation, false);
- }
-
-
- public static CdmApplicationController NewInstance(ICdmDataSource dataSource, DbSchemaValidation dbSchemaValidation){
- return CdmApplicationController.NewInstance(null, dataSource, dbSchemaValidation, false);
- }
-
-
- public static CdmApplicationController NewInstance(ICdmDataSource dataSource, DbSchemaValidation dbSchemaValidation, boolean omitTermLoading){
- return CdmApplicationController.NewInstance(null, dataSource, dbSchemaValidation, omitTermLoading);
- }
-
- public static CdmApplicationController NewInstance(Resource applicationContextResource, ICdmDataSource dataSource,
- DbSchemaValidation dbSchemaValidation, boolean omitTermLoading){
- return CdmApplicationController.NewInstance(applicationContextResource, dataSource, dbSchemaValidation, omitTermLoading, null);
- }
-
- public static CdmApplicationController NewInstance(Resource applicationContextResource, ICdmDataSource dataSource,
- DbSchemaValidation dbSchemaValidation, boolean omitTermLoading, IProgressMonitor progressMonitor){
- return new CdmApplicationController(applicationContextResource, dataSource, dbSchemaValidation, omitTermLoading, progressMonitor, null);
- }
-
-
- //TODO discuss need for listeners before commit to trunk
- // public static CdmApplicationController NewInstance(Resource applicationContextResource, ICdmDataSource dataSource, DbSchemaValidation dbSchemaValidation, boolean omitTermLoading, IProgressMonitor progressMonitor, List<ApplicationListener> listeners) {
- // return new CdmApplicationController(applicationContextResource, dataSource, dbSchemaValidation, omitTermLoading, progressMonitor,listeners);
- // }
-
- /**
- * @return
- */
- protected static ClassPathResource getClasspathResource(){
- return new ClassPathResource(DEFAULT_APPLICATION_CONTEXT_RESOURCE);
- }
-
-
- /**
- * @return
- * @throws DataSourceNotFoundException
- */
- protected static CdmPersistentDataSource getDefaultDatasource() throws DataSourceNotFoundException{
- CdmPersistentDataSource dataSource = CdmPersistentDataSource.NewDefaultInstance();
- return dataSource;
- }
-
-
- /**
- *
- * FIXME:Remoting this constructor is added only to allow extension of this cntroller
- * class. and should be removed after refactoring
- */
- protected CdmApplicationController(){
- applicationContextResource = null;
- progressMonitor = null;
- }
-
-
- /**
- * Constructor, opens an spring 2.5 ApplicationContext by using the according data
- * source
- *
- * @param dataSource
- * @param dbSchemaValidation
- * @param omitTermLoading
- */
- protected CdmApplicationController(Resource applicationContextResource, ICdmDataSource dataSource, DbSchemaValidation dbSchemaValidation,
- boolean omitTermLoading, IProgressMonitor progressMonitor, List<ApplicationListener> listeners){
- logger.info("Start CdmApplicationController with datasource: " + dataSource.getName());
-
- if (dbSchemaValidation == null) {
- dbSchemaValidation = defaultDbSchemaValidation;
- }
- this.applicationContextResource = applicationContextResource != null ? applicationContextResource : getClasspathResource();
- this.progressMonitor = progressMonitor != null ? progressMonitor : new NullProgressMonitor();
-
- setNewDataSource(dataSource, dbSchemaValidation, omitTermLoading, listeners);
- }
-
-
- /**
- * Sets the application context to a new spring ApplicationContext by using the
- * according data source and initializes the Controller.
- *
- * @param dataSource
- */
- private boolean setNewDataSource(ICdmDataSource dataSource, DbSchemaValidation dbSchemaValidation, boolean omitTermLoading,
- List<ApplicationListener> listeners){
-
- if (dbSchemaValidation == null) {
- dbSchemaValidation = defaultDbSchemaValidation;
- }
- logger.info("Connecting to '" + dataSource.getName() + "'");
-
- MonitoredGenericApplicationContext applicationContext = new MonitoredGenericApplicationContext();
- int refreshTasks = 45;
- int nTasks = 5 + refreshTasks;
- // nTasks += applicationContext.countTasks();
- progressMonitor.beginTask("Connecting to '" + dataSource.getName() + "'", nTasks);
-
- // progressMonitor.worked(1);
-
- BeanDefinition datasourceBean = dataSource.getDatasourceBean();
- datasourceBean.setAttribute("isLazy", false);
- progressMonitor.subTask("Registering datasource.");
- applicationContext.registerBeanDefinition("dataSource", datasourceBean);
- progressMonitor.worked(1);
-
- BeanDefinition hibernatePropBean = dataSource.getHibernatePropertiesBean(dbSchemaValidation);
- applicationContext.registerBeanDefinition("hibernateProperties", hibernatePropBean);
-
- XmlBeanDefinitionReader xmlReader = new XmlBeanDefinitionReader(applicationContext);
- progressMonitor.subTask("Registering resources.");
- xmlReader.loadBeanDefinitions(applicationContextResource);
- progressMonitor.worked(1);
-
- //omitTerms
- if (omitTermLoading == true) {
- String initializerName = "persistentTermInitializer";
- BeanDefinition beanDef = applicationContext.getBeanDefinition(initializerName);
- MutablePropertyValues values = beanDef.getPropertyValues();
- values.addPropertyValue("omit", omitTermLoading);
- }
-
- if (listeners != null) {
- for (ApplicationListener listener : listeners) {
- applicationContext.addApplicationListener(listener);
- }
- }
-
- // String message = "Start application context. This might take a while ...";
- //// progressMonitor.subTask(message);
- // SubProgressMonitor subMonitor= new SubProgressMonitor(progressMonitor, 10);
- // subMonitor.beginTask(message, 2);
- // applicationContext.setProgressMonitor(subMonitor);
-
- applicationContext.refresh(new SubProgressMonitor(progressMonitor, refreshTasks));
- applicationContext.start();
- // progressMonitor.worked(1);
-
- progressMonitor.subTask("Cleaning up.");
- setApplicationContext(applicationContext);
- progressMonitor.worked(1);
-
- progressMonitor.done();
- return true;
- }
-
-
- /**
- * Tests if some DefinedTermsAreMissing.
- *
- * @return true, if at least one is missing, else false
- */
- public boolean testDefinedTermsAreMissing(){
- UUID englishUuid = UUID.fromString("e9f8cdb7-6819-44e8-95d3-e2d0690c3523");
- DefinedTermBase<?> english = this.getTermService().load(englishUuid);
- if (english == null || !english.getUuid().equals(englishUuid)) {
- return true;
- }
- else {
- return false;
- }
- }
-
-
- /**
- * Changes the ApplicationContext to the new dataSource
- *
- * @param dataSource
- */
- public boolean changeDataSource(ICdmDataSource dataSource){
- //logger.info("Change datasource to : " + dataSource);
- return setNewDataSource(dataSource, DbSchemaValidation.VALIDATE, false, null);
- }
-
-
- /**
- * Changes the ApplicationContext to the new dataSource
- *
- * @param dataSource
- * @param dbSchemaValidation
- */
- public boolean changeDataSource(ICdmDataSource dataSource, DbSchemaValidation dbSchemaValidation){
- //logger.info("Change datasource to : " + dataSource);
- return setNewDataSource(dataSource, dbSchemaValidation, false, null);
- }
-
-
- /**
- * Changes the ApplicationContext to the new dataSource
- *
- * @param dataSource
- * @param dbSchemaValidation
- * @param omitTermLoading
- */
- public boolean changeDataSource(ICdmDataSource dataSource, DbSchemaValidation dbSchemaValidation, boolean omitTermLoading){
- logger.info("Change datasource to : " + dataSource);
- return setNewDataSource(dataSource, dbSchemaValidation, omitTermLoading, null);
- }
-
-
- /**
- * Changes the ApplicationContext to the new dataSource
- *
- * @param dataSource
- * @param dbSchemaValidation
- * @param omitTermLoading
- */
- public boolean changeDataSource(ICdmDataSource dataSource, DbSchemaValidation dbSchemaValidation, boolean omitTermLoading,
- List<ApplicationListener> listeners){
- logger.info("Change datasource to : " + dataSource);
- return setNewDataSource(dataSource, dbSchemaValidation, omitTermLoading, listeners);
- }
-
-
- /**
- * Sets a new application Context.
- *
- * @param ac
- */
- public void setApplicationContext(AbstractApplicationContext ac){
- closeApplicationContext(); //closes old application context if necessary
- applicationContext = ac;
- applicationContext.registerShutdownHook();
- init();
- }
-
-
- /*
- * (non-Javadoc)
- *
- * @see java.lang.Object#finalize()
- */
- @Override
- public void finalize(){
- close();
- }
-
-
- /**
- * closes the application
- */
- public void close(){
- closeApplicationContext();
- }
-
-
- /**
- * closes the application context
- */
- protected void closeApplicationContext(){
- if (applicationContext != null) {
- logger.info("Close ApplicationContext");
- applicationContext.close();
- }
- }
-
-
- protected void init(){
- logger.debug("Init " + this.getClass().getName() + " ... ");
- if (logger.isDebugEnabled()) {
- for (String beanName : applicationContext.getBeanDefinitionNames()) {
- logger.debug(beanName);
- }
- }
- //TODO delete next row (was just for testing)
- if (logger.isInfoEnabled()) {
- logger.info("Registered Beans: ");
- String[] beanNames = applicationContext.getBeanDefinitionNames();
- for (String beanName : beanNames) {
- logger.info(beanName);
- }
- }
- configuration = (ICdmApplicationConfiguration) applicationContext.getBean("cdmApplicationDefaultConfiguration");
- try {
- //FIXME:Remoting catching exection to allow for remoting
- getDatabaseService().setApplicationController(this);
- }
- catch (UnsupportedOperationException uoe) {
- logger.warn("getDatabaseService() is not implmented for current application context");
- }
- }
-
-
- /* ****** Services ******** */
- @Override
- public final IAnnotationService getAnnotationService(){
- return configuration.getAnnotationService();
- }
-
- @Override
- public final INameService getNameService(){
- return configuration.getNameService();
- }
-
-
- @Override
- public final ITaxonService getTaxonService(){
- return configuration.getTaxonService();
- }
-
-
- @Override
- public final IClassificationService getClassificationService(){
- return configuration.getClassificationService();
- }
-
-
- @Override
- public final ITaxonNodeService getTaxonNodeService(){
- return configuration.getTaxonNodeService();
- }
-
-
- @Override
- public final IReferenceService getReferenceService(){
- return configuration.getReferenceService();
- }
-
-
- @Override
- public final IAgentService getAgentService(){
- return configuration.getAgentService();
- }
-
-
- @Override
- public final IDatabaseService getDatabaseService(){
- return configuration.getDatabaseService();
- }
-
-
- @Override
- public final ITermService getTermService(){
- return configuration.getTermService();
- }
-
-
- @Override
- public final IDescriptionService getDescriptionService(){
- return configuration.getDescriptionService();
- }
-
-
- @Override
- public final IOccurrenceService getOccurrenceService(){
- return configuration.getOccurrenceService();
- }
-
- @Override
- public IAmplificationService getAmplificationService(){
- return configuration.getAmplificationService();
- }
-
- @Override
- public ISequenceService getSequenceService(){
- return configuration.getSequenceService();
- }
-
-
- @Override
- public final IPrimerService getPrimerService(){
- return configuration.getPrimerService();
- }
-
-
- @Override
- public final IMediaService getMediaService(){
- return configuration.getMediaService();
- }
-
-
- @Override
- public final ICommonService getCommonService(){
- return configuration.getCommonService();
- }
-
-
- @Override
- public final ILocationService getLocationService(){
- return configuration.getLocationService();
- }
-
-
- @Override
- public final IUserService getUserService(){
- return configuration.getUserService();
- }
-
-
- @Override
- public final IGrantedAuthorityService getGrantedAuthorityService(){
- return configuration.getGrantedAuthorityService();
- }
-
-
- @Override
- public IGroupService getGroupService(){
- return configuration.getGroupService();
- }
-
-
- @Override
- public final ICollectionService getCollectionService(){
- return configuration.getCollectionService();
- }
-
-
- @Override
- public final IFeatureTreeService getFeatureTreeService(){
- return configuration.getFeatureTreeService();
- }
-
-
- @Override
- public final IFeatureNodeService getFeatureNodeService(){
- return configuration.getFeatureNodeService();
- }
-
-
- @Override
- public final IVocabularyService getVocabularyService(){
- return configuration.getVocabularyService();
- }
-
-
- @Override
- public final IIdentificationKeyService getIdentificationKeyService(){
- return configuration.getIdentificationKeyService();
- }
-
-
- @Override
- public final IPolytomousKeyService getPolytomousKeyService(){
- return configuration.getPolytomousKeyService();
- }
-
-
- @Override
- public final IPolytomousKeyNodeService getPolytomousKeyNodeService(){
- return configuration.getPolytomousKeyNodeService();
- }
-
-
- @Override
- public IEntityValidationService getEntityValidationService(){
- return configuration.getEntityValidationService();
- }
-
-
- @Override
- public IEntityConstraintViolationService getEntityConstraintViolationService(){
- return configuration.getEntityConstraintViolationService();
- }
-
-
- @Override
- public final IService<CdmBase> getMainService(){
- return configuration.getMainService();
- }
-
-
- @Override
- public final IWorkingSetService getWorkingSetService(){
- return configuration.getWorkingSetService();
- }
-
-
- @Override
- public final ConversationHolder NewConversation(){
- //return (ConversationHolder)applicationContext.getBean("conversationHolder");
- return configuration.NewConversation();
- }
-
-
- /* **** Security ***** */
-
- @Override
- public void authenticate(String username, String password){
- UsernamePasswordAuthenticationToken tokenForUser = new UsernamePasswordAuthenticationToken(username, password);
- Authentication authentication = this.getAuthenticationManager().authenticate(tokenForUser);
- SecurityContext context = SecurityContextHolder.getContext();
- context.setAuthentication(authentication);
- }
-
- @Override
- public final ProviderManager getAuthenticationManager(){
- return configuration.getAuthenticationManager();
- }
-
-
- @Override
- public ICdmPermissionEvaluator getPermissionEvaluator(){
- return configuration.getPermissionEvaluator();
- }
-
-
- /**
- * @see org.springframework.security.access.PermissionEvaluator#hasPermission(org.springframework.security.core.Authentication,
- * java.lang.Object, java.lang.Object)
- *
- * @param targetDomainObject
- * @param permission
- * @return
- */
- public boolean currentAuthentiationHasPermissions(CdmBase targetDomainObject, EnumSet<CRUD> permission){
- SecurityContext context = SecurityContextHolder.getContext();
- return getPermissionEvaluator().hasPermission(context.getAuthentication(), targetDomainObject, permission);
- }
-
-
- @Override
- public final PlatformTransactionManager getTransactionManager(){
- return configuration.getTransactionManager();
- }
-
-
- @Override
- public final Object getBean(String name){
- return this.applicationContext.getBean(name);
- }
-
-
- /*
- * OLD TRANSACTION STUFF
- */
-
- /* **** flush ********** */
- public void flush(){
- SessionFactory sf = (SessionFactory) applicationContext.getBean("sessionFactory");
- sf.getCurrentSession().flush();
- }
-
-
- public SessionFactory getSessionFactory(){
- return (SessionFactory) applicationContext.getBean("sessionFactory");
- }
-
-
- @Override
- public TransactionStatus startTransaction(){
- return startTransaction(false);
- }
-
-
- @Override
- public TransactionStatus startTransaction(Boolean readOnly){
- return configuration.startTransaction(readOnly);
- }
-
- @Override
- public void commitTransaction(TransactionStatus txStatus){
- PlatformTransactionManager txManager = configuration.getTransactionManager();
- txManager.commit(txStatus);
- return;
- }
-}
BGBM BDI Projects / cdmlib.git / commitdiff