Andreas Müller [Fri, 22 Jun 2018 07:54:43 +0000 (09:54 +0200)]
ref #3560 unpublished exception handling for TaxonController.doGetAcceptedFor
Andreas Müller [Fri, 22 Jun 2018 07:53:41 +0000 (09:53 +0200)]
cleanup
Katja Luther [Thu, 21 Jun 2018 14:32:24 +0000 (16:32 +0200)]
ref #7463:add subtask for saving and reindexing in moveTaxonNodes
Andreas Müller [Thu, 21 Jun 2018 13:48:56 +0000 (15:48 +0200)]
ref #3560 secured TaxonPortalController.doGetFromNameRelations and doGetToNameRelations
Andreas Müller [Thu, 21 Jun 2018 13:38:57 +0000 (15:38 +0200)]
ref #3560 secured TaxonPortalController.doGetMedia and doGetSubtreeMedia
Andreas Müller [Thu, 21 Jun 2018 12:26:12 +0000 (14:26 +0200)]
cleanup
Andreas Müller [Wed, 20 Jun 2018 22:35:56 +0000 (00:35 +0200)]
try to fix tests
Andreas Müller [Wed, 20 Jun 2018 22:35:42 +0000 (00:35 +0200)]
cleanup
Andreas Müller [Wed, 20 Jun 2018 22:17:57 +0000 (00:17 +0200)]
cleanup
Andreas Müller [Wed, 20 Jun 2018 22:04:11 +0000 (00:04 +0200)]
cleanup
Andreas Müller [Wed, 20 Jun 2018 21:54:19 +0000 (23:54 +0200)]
fix incorrect handling of null lists and boolean operator in NameCatalogueController
Andreas Müller [Wed, 20 Jun 2018 21:53:44 +0000 (23:53 +0200)]
cleanup
Andreas Müller [Wed, 20 Jun 2018 20:46:18 +0000 (22:46 +0200)]
ref #7478 add test to pro parte hql search
Andreas Müller [Wed, 20 Jun 2018 20:43:02 +0000 (22:43 +0200)]
cleanup
Andreas Müller [Wed, 20 Jun 2018 20:32:51 +0000 (22:32 +0200)]
remove harmonization candidates in TaxonDao and NameService
Andreas Müller [Wed, 20 Jun 2018 20:26:15 +0000 (22:26 +0200)]
cleanup
Andreas Müller [Wed, 20 Jun 2018 12:35:21 +0000 (14:35 +0200)]
ref #3547 cleanup and remove size of TaxonDaoHibernateImplTest.testGetTaxaByNameAndArea.xml
Andreas Müller [Wed, 20 Jun 2018 12:16:03 +0000 (14:16 +0200)]
improve readability of test and fix test for common names
Andreas Kohlbecker [Wed, 20 Jun 2018 12:04:12 +0000 (14:04 +0200)]
fixing minor logging issues in catalogue controllers
Andreas Kohlbecker [Wed, 20 Jun 2018 11:45:11 +0000 (13:45 +0200)]
fixing minor logging issues in controllers
Andreas Müller [Wed, 20 Jun 2018 11:41:49 +0000 (13:41 +0200)]
ref #7478 simplify taxon hql search code
Andreas Müller [Wed, 20 Jun 2018 11:41:22 +0000 (13:41 +0200)]
cleanup
Andreas Kohlbecker [Wed, 20 Jun 2018 11:21:21 +0000 (13:21 +0200)]
dedicated private loggers per controller class for more useful logs
Andreas Kohlbecker [Wed, 20 Jun 2018 11:19:44 +0000 (13:19 +0200)]
dedicated private loggers per controller class for more useful logs
Andreas Müller [Wed, 20 Jun 2018 10:38:17 +0000 (12:38 +0200)]
ref #7478 some cleanup and renaming for taxon hql search
Andreas Müller [Wed, 20 Jun 2018 10:05:34 +0000 (12:05 +0200)]
ref #7478 fix pro parte synonym search in taxon hql search (still untested)
Andreas Müller [Wed, 20 Jun 2018 10:01:58 +0000 (12:01 +0200)]
cleanup
Andreas Müller [Tue, 19 Jun 2018 15:59:01 +0000 (17:59 +0200)]
corretly handle exception in ClassificationPortalListController
Andreas Müller [Tue, 19 Jun 2018 15:58:17 +0000 (17:58 +0200)]
ref #4101 change ICNB and ICNAFP in order of enum to get a more alphabetically oriented order.
Katja Luther [Tue, 19 Jun 2018 15:32:11 +0000 (17:32 +0200)]
smaller changes for longrunning tasks and progress monitor
Katja Luther [Tue, 19 Jun 2018 15:00:43 +0000 (17:00 +0200)]
cancel the longrunning thread cancels moveTaxonNode and set it to rollbackOnly
Katja Luther [Tue, 19 Jun 2018 14:06:55 +0000 (16:06 +0200)]
check in done() in remotingProgressMonitor whether result is already set
Andreas Müller [Tue, 19 Jun 2018 13:25:55 +0000 (15:25 +0200)]
cleanup
Patrick Plitzner [Mon, 18 Jun 2018 14:35:09 +0000 (16:35 +0200)]
ref #6321 Make OrderHint serializable
Katja Luther [Tue, 19 Jun 2018 11:21:47 +0000 (13:21 +0200)]
progressmonitor should be set to done by progressMonitorThread not in service methods
Katja Luther [Tue, 19 Jun 2018 09:32:57 +0000 (11:32 +0200)]
fix problems with progress monitor
Katja Luther [Tue, 19 Jun 2018 08:41:04 +0000 (10:41 +0200)]
remove progress monitor thread from progress monitor
Katja Luther [Tue, 19 Jun 2018 07:06:54 +0000 (09:06 +0200)]
revert changes in cleanupThread of progressMOnitorManager
Katja Luther [Mon, 18 Jun 2018 12:12:39 +0000 (14:12 +0200)]
remove monitorThread from monitor and handle it in progressMonitorManager
Katja Luther [Mon, 18 Jun 2018 08:00:45 +0000 (10:00 +0200)]
ref #7463: do not move children of a moved node to the new parent but keep it as children
Katja Luther [Mon, 18 Jun 2018 07:45:56 +0000 (09:45 +0200)]
ref #7463: add only moved nodes to resultSet of moveTaxonNodes
Andreas Müller [Sat, 16 Jun 2018 20:21:04 +0000 (22:21 +0200)]
ref #7487 set test to ignore
Andreas Müller [Sat, 16 Jun 2018 20:17:33 +0000 (22:17 +0200)]
ref #7487 fix ticket number 7486->7487
Andreas Müller [Sat, 16 Jun 2018 20:14:19 +0000 (22:14 +0200)]
ref #7486 create test for pro parte search issue
Andreas Müller [Sat, 16 Jun 2018 20:13:19 +0000 (22:13 +0200)]
cleanup
Andreas Müller [Sat, 16 Jun 2018 20:11:52 +0000 (22:11 +0200)]
fix pro parte/partial test data labels
Andreas Müller [Sat, 16 Jun 2018 17:41:47 +0000 (19:41 +0200)]
rel #7478 implement pro parte synonym search in free text taxon and name search
Andreas Müller [Sat, 16 Jun 2018 16:15:19 +0000 (18:15 +0200)]
cleanup
Andreas Müller [Sat, 16 Jun 2018 15:49:42 +0000 (17:49 +0200)]
fix #7486 fix taxon full text search if doTaxon is missing
Andreas Müller [Sat, 16 Jun 2018 15:10:44 +0000 (17:10 +0200)]
Unignore tests
Andreas Müller [Sat, 16 Jun 2018 15:05:08 +0000 (17:05 +0200)]
cleanup
Andreas Müller [Sat, 16 Jun 2018 14:58:02 +0000 (16:58 +0200)]
ref #7334 add pro parte and partial synonym to test terms
Andreas Kohlbecker [Fri, 15 Jun 2018 14:50:27 +0000 (16:50 +0200)]
ref #7223 ReferencePropertyDefinitions adding Journal which has been lost in last commit
Andreas Kohlbecker [Fri, 15 Jun 2018 14:12:46 +0000 (16:12 +0200)]
ref #7223 ReferencePropertyDefinitions adding Proceedings and code cleaning
Andreas Kohlbecker [Fri, 15 Jun 2018 13:26:47 +0000 (15:26 +0200)]
ref #7223 ReferencePropertyDefinitions documentation and fixing field name
Patrick Plitzner [Fri, 15 Jun 2018 13:03:01 +0000 (15:03 +0200)]
Adjust specimen type designation display
Andreas Kohlbecker [Fri, 15 Jun 2018 12:16:48 +0000 (14:16 +0200)]
ref #/7223 ReferencePropertyDefinitions provides field and property name information per reference type
Andreas Müller [Thu, 14 Jun 2018 22:14:46 +0000 (00:14 +0200)]
fix #7445 fix csv reading for uri and isoXXX in terms
Andreas Müller [Thu, 14 Jun 2018 20:35:46 +0000 (22:35 +0200)]
ref #3560 fix includeUnpublished for taxon relationships and correct includePublished->includeUnpublished
Andreas Kohlbecker [Thu, 14 Jun 2018 13:42:26 +0000 (15:42 +0200)]
ref #1080 removing commented @IndexedEmbedded from Reference.inReference
Andreas Kohlbecker [Thu, 14 Jun 2018 13:29:39 +0000 (15:29 +0200)]
re-enabling MobotOpenUrlServiceWrapperTest.testDoResolveAndPage_1()
Andreas Müller [Thu, 14 Jun 2018 11:59:30 +0000 (13:59 +0200)]
use long instead of int (cont.)
Andreas Müller [Thu, 14 Jun 2018 11:15:14 +0000 (13:15 +0200)]
use long instead of int (cont.)
Andreas Müller [Thu, 14 Jun 2018 10:57:11 +0000 (12:57 +0200)]
use long instead of int (cont.)
Andreas Müller [Thu, 14 Jun 2018 08:36:37 +0000 (10:36 +0200)]
use long instead of int in some of the count methods, use base methods for pageSize/number and order for criteria and queries, cleanup
Katja Luther [Thu, 14 Jun 2018 08:02:54 +0000 (10:02 +0200)]
minor
Andreas Müller [Wed, 13 Jun 2018 23:12:52 +0000 (01:12 +0200)]
cleanup
Andreas Müller [Wed, 13 Jun 2018 22:44:00 +0000 (00:44 +0200)]
ref #3560 add includeUnpublished for taxon relationships
Andreas Müller [Wed, 13 Jun 2018 11:36:54 +0000 (13:36 +0200)]
cleanup and remove rows(xxx) method
Andreas Kohlbecker [Wed, 13 Jun 2018 15:40:49 +0000 (17:40 +0200)]
fix #7467 taxon name parts lookup method with support for wildcard searches, TaxonNameParts and filter
Andreas Kohlbecker [Wed, 13 Jun 2018 15:39:46 +0000 (17:39 +0200)]
updating deprecation information on methods using int for hibernare result count which is now long
Andreas Kohlbecker [Wed, 13 Jun 2018 15:35:18 +0000 (17:35 +0200)]
startH2Server documentation
Andreas Kohlbecker [Tue, 12 Jun 2018 12:02:37 +0000 (14:02 +0200)]
fixing problems with startH2Server documentation
Andreas Kohlbecker [Tue, 12 Jun 2018 11:13:44 +0000 (13:13 +0200)]
fixing problems with startH2Server and providing feedback to developers on start up
Andreas Müller [Wed, 13 Jun 2018 11:36:33 +0000 (13:36 +0200)]
ref #3560 fix wrong method call in BaseController
Andreas Müller [Wed, 13 Jun 2018 00:37:48 +0000 (02:37 +0200)]
ref #3560 remove unpublished synonyms from taxon.synonymy (handle homotypic syns correctly)
Andreas Müller [Wed, 13 Jun 2018 00:29:08 +0000 (02:29 +0200)]
cleanup
Andreas Müller [Wed, 13 Jun 2018 00:26:59 +0000 (02:26 +0200)]
ref #3560 handle access denied for unpublished data in BaseController.doGet
Andreas Müller [Wed, 13 Jun 2018 00:03:20 +0000 (02:03 +0200)]
ref #3560 remove unpublished synonyms from taxon.synonymy (fix)
Andreas Müller [Tue, 12 Jun 2018 23:50:11 +0000 (01:50 +0200)]
ref #3560 handle access denied for unpublished data in some TaxonController methods
Andreas Müller [Tue, 12 Jun 2018 23:03:55 +0000 (01:03 +0200)]
cleanup
Andreas Müller [Tue, 12 Jun 2018 23:02:30 +0000 (01:02 +0200)]
ref #3560 remove unpublished synonyms from taxon.synonymy
Andreas Müller [Tue, 12 Jun 2018 19:53:18 +0000 (21:53 +0200)]
ref #3560, ref #5477 fix missing lucene index update for synonyms and misapplied names
Andreas Müller [Tue, 12 Jun 2018 19:48:13 +0000 (21:48 +0200)]
ref #3560 further improve full text taxonAndName search for publish flag, including tests
Andreas Müller [Tue, 12 Jun 2018 18:38:22 +0000 (20:38 +0200)]
cleanup
Andreas Müller [Tue, 12 Jun 2018 18:34:41 +0000 (20:34 +0200)]
potentially fix uuid query factory method
Andreas Müller [Tue, 12 Jun 2018 18:21:37 +0000 (20:21 +0200)]
cleanup
Andreas Müller [Tue, 12 Jun 2018 18:05:09 +0000 (20:05 +0200)]
ref #5974 fully remove multi value field logic from AcceptedTaxonBridge
Katja Luther [Tue, 12 Jun 2018 14:26:24 +0000 (16:26 +0200)]
adapt test
Katja Luther [Tue, 12 Jun 2018 14:21:33 +0000 (16:21 +0200)]
add test for misappliedname problem with type desinations
Andreas Müller [Tue, 12 Jun 2018 12:15:01 +0000 (14:15 +0200)]
ref #3560 try to add publish to synonym search in findTaxaAndNamesByFullText (probably not working yet)
Andreas Müller [Tue, 12 Jun 2018 11:53:45 +0000 (13:53 +0200)]
cleanup
Andreas Müller [Tue, 12 Jun 2018 11:27:33 +0000 (13:27 +0200)]
ref #5974 fully remove multi value field logic from AcceptedTaxonBridge
Andreas Müller [Tue, 12 Jun 2018 11:22:52 +0000 (13:22 +0200)]
cleanup
Katja Luther [Tue, 12 Jun 2018 08:13:36 +0000 (10:13 +0200)]
smaller changes in taxon list import
Katja Luther [Tue, 12 Jun 2018 07:47:03 +0000 (09:47 +0200)]
fix in getUuidAndTitleCache
Andreas Müller [Mon, 11 Jun 2018 18:36:19 +0000 (20:36 +0200)]
cleanup
Andreas Müller [Mon, 11 Jun 2018 16:49:27 +0000 (18:49 +0200)]
minor
Andreas Müller [Mon, 11 Jun 2018 16:48:22 +0000 (18:48 +0200)]
fix #7469 fix column type changer for Postgres
Andreas Müller [Mon, 11 Jun 2018 13:35:50 +0000 (15:35 +0200)]
fix #7468 fix update script for mediaCreated in PostGreSQL