Patrick Plitzner [Mon, 30 Jul 2018 07:05:54 +0000 (09:05 +0200)]
ref #7597 Refactor aggregation method + add taxon aggregation method
Andreas Kohlbecker [Fri, 27 Jul 2018 19:08:32 +0000 (21:08 +0200)]
fix #7591 ReferencePropertyDefinitions adding 'General' and using 'all' as default
Patrick Plitzner [Fri, 27 Jul 2018 14:09:00 +0000 (16:09 +0200)]
ref #7597 Refactor aggregation method
Patrick Plitzner [Fri, 27 Jul 2018 12:18:53 +0000 (14:18 +0200)]
ref #7509 Add "computed" flag to description
Patrick Plitzner [Fri, 27 Jul 2018 09:31:48 +0000 (11:31 +0200)]
ref #7589 Improve description search when adding specimens to the matrix
Andreas Kohlbecker [Fri, 27 Jul 2018 09:15:08 +0000 (11:15 +0200)]
ref #7590 documentation
Andreas Kohlbecker [Fri, 27 Jul 2018 06:49:53 +0000 (08:49 +0200)]
ref #7590 replacing not flag in restrictions by AND_NOT and OR_NOT operators
Andreas Kohlbecker [Fri, 27 Jul 2018 06:41:52 +0000 (08:41 +0200)]
ref #7590 implementing AND and OR operator for restrictions and harmonizing code
Patrick Plitzner [Thu, 26 Jul 2018 15:09:53 +0000 (17:09 +0200)]
ref #7589 Delete taxon node from descriptive data set
Patrick Plitzner [Thu, 26 Jul 2018 15:09:21 +0000 (17:09 +0200)]
Fix possible NoSuchElementException
Katja Luther [Thu, 26 Jul 2018 11:02:17 +0000 (13:02 +0200)]
minor
Katja Luther [Thu, 26 Jul 2018 10:54:34 +0000 (12:54 +0200)]
move getFieldUnits to findFieldUnits
Katja Luther [Thu, 26 Jul 2018 10:19:56 +0000 (12:19 +0200)]
adding new SpecimenOrObservationType and smaller changes
Katja Luther [Thu, 26 Jul 2018 09:15:42 +0000 (11:15 +0200)]
smaller changes in ABCD import
Patrick Plitzner [Thu, 26 Jul 2018 08:02:31 +0000 (10:02 +0200)]
Remove description from DescriptiveDataSet during deletion
Patrick Plitzner [Thu, 26 Jul 2018 08:00:49 +0000 (10:00 +0200)]
Fix dataset removal method (possibly copy&paste error)
Andreas Kohlbecker [Wed, 25 Jul 2018 17:15:03 +0000 (19:15 +0200)]
ref #7573 adding AGTENTBASE to CdmPermissionClass and creating generic RoleProber
Katja Luther [Tue, 24 Jul 2018 13:58:31 +0000 (15:58 +0200)]
fix #7542: first remove synoným then add it to new accepted taxon to avoid orphan synonyms
Andreas Kohlbecker [Tue, 24 Jul 2018 12:38:36 +0000 (14:38 +0200)]
fix #7578 DefaultValueProcessor to serialize all null numbers as null
Andreas Kohlbecker [Tue, 24 Jul 2018 07:10:49 +0000 (09:10 +0200)]
ref #7223 add in null case to ReferencePropertyDefinitions to provide all possible fields
Patrick Plitzner [Mon, 23 Jul 2018 16:02:16 +0000 (18:02 +0200)]
Add service method to find a description for a dataset
Andreas Kohlbecker [Thu, 19 Jul 2018 08:54:59 +0000 (10:54 +0200)]
ref #7348 implementing registrationWorkingSet service endpoint and harmonizing logging
Andreas Kohlbecker [Thu, 19 Jul 2018 06:29:20 +0000 (08:29 +0200)]
ref #7561 removing associated name and protologue from OccurrencePortalController and FieldUnitDTO
Andreas Kohlbecker [Thu, 19 Jul 2018 06:28:08 +0000 (08:28 +0200)]
ref #7348 ordering registrations by identifier
Andreas Kohlbecker [Thu, 19 Jul 2018 06:26:54 +0000 (08:26 +0200)]
ref #7348 stripping .json and .xml from reguest urls
Andreas Kohlbecker [Mon, 16 Jul 2018 12:57:32 +0000 (14:57 +0200)]
ref #7550 pluggable Role tests for the UserHelper
Andreas Kohlbecker [Fri, 13 Jul 2018 11:09:59 +0000 (13:09 +0200)]
ref #7348 preliminar swagger documentation on RegistrationDTOController and RegistrationController
Andreas Kohlbecker [Fri, 13 Jul 2018 10:35:55 +0000 (12:35 +0200)]
ref #7348 implementing find service for registrations with user, typeDesignationStatus, registrationStatus, identifier and taxonname filters
Andreas Kohlbecker [Fri, 13 Jul 2018 05:57:14 +0000 (07:57 +0200)]
ref #7348 typeDesignations as non bean property to supress it for RegistrationDTO serializations
Andreas Kohlbecker [Thu, 12 Jul 2018 20:08:44 +0000 (22:08 +0200)]
ref #7348 TypeDesignationSetManager provides TaggedText representation
Andreas Kohlbecker [Thu, 12 Jul 2018 19:17:19 +0000 (21:17 +0200)]
removing bug which was introduced in
7dcfc77
Andreas Kohlbecker [Thu, 12 Jul 2018 15:31:55 +0000 (17:31 +0200)]
ref #7552 adding TypedEntityReference data to TaggedText
Andreas Kohlbecker [Thu, 12 Jul 2018 15:13:56 +0000 (17:13 +0200)]
removing almost unused type check methods from TaggedText
Andreas Kohlbecker [Thu, 12 Jul 2018 14:58:07 +0000 (16:58 +0200)]
fix #6967 implementing registration/identifier endpoints for domain entity and DTO api
Andreas Kohlbecker [Thu, 12 Jul 2018 13:41:41 +0000 (15:41 +0200)]
typo
Andreas Kohlbecker [Thu, 12 Jul 2018 13:40:22 +0000 (15:40 +0200)]
ref #7527 adding missing @Transactional to new service methods
Andreas Kohlbecker [Thu, 12 Jul 2018 13:38:19 +0000 (15:38 +0200)]
ref #7550 relaxing bean dependencies for tests without security context
Andreas Kohlbecker [Thu, 12 Jul 2018 12:29:04 +0000 (14:29 +0200)]
ref #7550 adding CdmUserHelper and interfaces in cdmlib (commit also contains a new conroller helper method)
Patrick Plitzner [Thu, 12 Jul 2018 10:46:15 +0000 (12:46 +0200)]
Specify return value for data value
Andreas Kohlbecker [Wed, 11 Jul 2018 13:47:14 +0000 (15:47 +0200)]
ref #6967 implementing /registration/{identifier} in RegistrationController
Andreas Kohlbecker [Wed, 11 Jul 2018 13:46:28 +0000 (15:46 +0200)]
fix #7527 making page by parameter with criteria and restrictions available in the service layer
Andreas Kohlbecker [Wed, 11 Jul 2018 11:15:41 +0000 (13:15 +0200)]
ref #7546 RegistrationIdentifierMinter can check for matching identifiers
Patrick Plitzner [Tue, 10 Jul 2018 16:26:50 +0000 (18:26 +0200)]
ref #7509 aggregate quant. and categorical data (simple concatenation)
Patrick Plitzner [Tue, 10 Jul 2018 14:51:08 +0000 (16:51 +0200)]
ref #7509 Adapt aggregation method parameter list
Patrick Plitzner [Tue, 10 Jul 2018 11:14:26 +0000 (13:14 +0200)]
ref #7509 Generalize method parameter to List
Patrick Plitzner [Tue, 10 Jul 2018 10:54:40 +0000 (12:54 +0200)]
Merge branch 'develop' into aggregation
# Conflicts:
# cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/TaxonNodeServiceImpl.java
Andreas Kohlbecker [Fri, 6 Jul 2018 13:14:54 +0000 (15:14 +0200)]
Merge branch 'feature/#7531' into develop
Andreas Kohlbecker [Fri, 6 Jul 2018 13:10:37 +0000 (15:10 +0200)]
ref #7531 CdmPermissionEvaluator.hasPermission() wraps cdm entities in TargetEntityStates
Andreas Kohlbecker [Fri, 6 Jul 2018 12:28:59 +0000 (14:28 +0200)]
ref #7531 RegistrationVoter evaluates previous state on Registration.status changes
Andreas Kohlbecker [Fri, 6 Jul 2018 11:27:59 +0000 (13:27 +0200)]
ref #7531 intoducing TargetEntityStates to replace plain cdm enities in the permission voting process
Andreas Kohlbecker [Thu, 5 Jul 2018 15:21:03 +0000 (17:21 +0200)]
ref #7533 RegistrationService with typeStatus filter
Andreas Kohlbecker [Thu, 5 Jul 2018 13:42:41 +0000 (15:42 +0200)]
renaming variable
Andreas Kohlbecker [Wed, 4 Jul 2018 12:53:55 +0000 (14:53 +0200)]
ref #7528 ref #6655 introducing RegistrationStatusTransitions to provide a matrix of allowed RegistrationStatus transitions
Andreas Kohlbecker [Mon, 2 Jul 2018 13:18:12 +0000 (15:18 +0200)]
TeamAutoInitializer only loads members for Teams
Andreas Kohlbecker [Mon, 2 Jul 2018 13:16:56 +0000 (15:16 +0200)]
removing unnecessary casts
Andreas Kohlbecker [Mon, 2 Jul 2018 13:15:31 +0000 (15:15 +0200)]
java doc and formatting
Andreas Müller [Tue, 3 Jul 2018 10:33:23 +0000 (12:33 +0200)]
cleanup
Andreas Müller [Tue, 3 Jul 2018 10:23:56 +0000 (12:23 +0200)]
ref #7530 3 families and dianthus import (WFO Access Import)
Andreas Müller [Wed, 27 Jun 2018 13:08:54 +0000 (15:08 +0200)]
cleanup
Andreas Kohlbecker [Mon, 2 Jul 2018 10:50:25 +0000 (12:50 +0200)]
ref #7525 ref #7523 allowing to use Restriction as exclude filter
Andreas Kohlbecker [Mon, 2 Jul 2018 07:13:47 +0000 (09:13 +0200)]
ref #7525 restoring all previously removed Criteria methods
Andreas Kohlbecker [Fri, 29 Jun 2018 21:05:28 +0000 (23:05 +0200)]
Revert "ref #7527 renaming CdmEntityDaoBase.*ByParam* methods"
This reverts commit
13ec97dbc071864563698e422a15ad725e28a55b.
Andreas Kohlbecker [Fri, 29 Jun 2018 15:24:52 +0000 (17:24 +0200)]
ref #7527 renaming CdmEntityDaoBase.*ByParam* methods
Andreas Kohlbecker [Fri, 29 Jun 2018 12:45:29 +0000 (14:45 +0200)]
fix #7525 replacing Criteria lists by cdm Restrictions in CdmEntityDaoBase.*ByTitle() methods
jenkins [Wed, 27 Jun 2018 14:02:25 +0000 (16:02 +0200)]
Updating develop poms back to pre merge state
jenkins [Wed, 27 Jun 2018 14:02:24 +0000 (16:02 +0200)]
Merge branch 'master' into develop
jenkins [Wed, 27 Jun 2018 14:02:23 +0000 (16:02 +0200)]
updating develop poms to master versions to avoid merge conflicts
jenkins [Wed, 27 Jun 2018 14:02:19 +0000 (16:02 +0200)]
Merge branch 'release/5.1.0'
jenkins [Wed, 27 Jun 2018 13:43:44 +0000 (15:43 +0200)]
updating poms for branch'release/5.1.0' with non-snapshot versions
jenkins [Wed, 27 Jun 2018 13:36:46 +0000 (15:36 +0200)]
Updating develop poms back to pre merge state
jenkins [Wed, 27 Jun 2018 13:36:45 +0000 (15:36 +0200)]
Merge branch 'master' into develop
jenkins [Wed, 27 Jun 2018 13:36:45 +0000 (15:36 +0200)]
updating develop poms to master versions to avoid merge conflicts
jenkins [Wed, 27 Jun 2018 13:36:40 +0000 (15:36 +0200)]
Merge branch 'release/5.1.0'
jenkins [Wed, 27 Jun 2018 13:22:04 +0000 (15:22 +0200)]
updating poms for branch'release/5.1.0' with non-snapshot versions
jenkins [Wed, 27 Jun 2018 12:45:56 +0000 (14:45 +0200)]
updating poms for 5.2.0-SNAPSHOT development
Katja Luther [Tue, 26 Jun 2018 14:19:50 +0000 (16:19 +0200)]
fix NPE in toString of Abcd206ImportConfigurator
Andreas Müller [Tue, 26 Jun 2018 14:04:35 +0000 (16:04 +0200)]
ref #7508 fix lazy loading exception for inverseRepresentations
Andreas Müller [Tue, 26 Jun 2018 13:33:42 +0000 (15:33 +0200)]
ref #7508 fix lazy loading exception for inverseRepresentations
Andreas Müller [Tue, 26 Jun 2018 12:17:16 +0000 (14:17 +0200)]
cleanup
Patrick Plitzner [Tue, 26 Jun 2018 09:13:00 +0000 (11:13 +0200)]
ref #7509 Implement service method for common parent taxon node + test
Andreas Kohlbecker [Tue, 26 Jun 2018 08:53:35 +0000 (10:53 +0200)]
fixing failing suppression of inverseRepresentations
Andreas Kohlbecker [Mon, 25 Jun 2018 07:08:28 +0000 (09:08 +0200)]
harmonizing controller logging
Andreas Müller [Mon, 25 Jun 2018 08:55:31 +0000 (10:55 +0200)]
remove deprecated method TaxonService.getAllMedia
Andreas Müller [Mon, 25 Jun 2018 08:36:38 +0000 (10:36 +0200)]
ref #7508 fix inverse L10n term representation
Patrick Plitzner [Mon, 25 Jun 2018 08:21:04 +0000 (10:21 +0200)]
ref #7509 Add service method for common parent taxon node
Andreas Müller [Fri, 22 Jun 2018 12:34:20 +0000 (14:34 +0200)]
ref #7508 correct handling of UUID in RepresentationBeanProcessor
Andreas Müller [Fri, 22 Jun 2018 12:12:14 +0000 (14:12 +0200)]
exception handling for classification filter in getAcceptedTaxonFor
Andreas Müller [Fri, 22 Jun 2018 12:11:12 +0000 (14:11 +0200)]
HTTPMessage handling in TaxonController
Andreas Müller [Fri, 22 Jun 2018 12:09:38 +0000 (14:09 +0200)]
ref #7508 further fix term representation web service
Andreas Müller [Fri, 22 Jun 2018 11:51:28 +0000 (13:51 +0200)]
cleanup
Andreas Müller [Fri, 22 Jun 2018 10:39:47 +0000 (12:39 +0200)]
fix NPE in IdentifiableServiceBase.getTitleSearchStringSqlized
Andreas Müller [Fri, 22 Jun 2018 10:39:03 +0000 (12:39 +0200)]
cleanup
Andreas Müller [Fri, 22 Jun 2018 10:13:47 +0000 (12:13 +0200)]
ref #3560 fix checkPublished in service base class
Andreas Müller [Fri, 22 Jun 2018 10:12:23 +0000 (12:12 +0200)]
cleanup
Patrick Plitzner [Fri, 22 Jun 2018 08:23:03 +0000 (10:23 +0200)]
ref #7439 SQLize title search for occurrences
Andreas Müller [Fri, 22 Jun 2018 09:33:20 +0000 (11:33 +0200)]
fix #7508 add language information to term representations
Andreas Müller [Fri, 22 Jun 2018 09:32:47 +0000 (11:32 +0200)]
cleanup
Andreas Müller [Fri, 22 Jun 2018 08:18:28 +0000 (10:18 +0200)]
cleanup
Andreas Müller [Fri, 22 Jun 2018 08:13:34 +0000 (10:13 +0200)]
Allow specific messages for HTTPStatusMessage responses
Andreas Müller [Fri, 22 Jun 2018 08:04:10 +0000 (10:04 +0200)]
ref #3560 unpublished exception handling for TaxonController.getPathFromTaxon(ToRank)