cdmlib.git
2 years agocreate taxonnodeDto directly with taxonUuid
Katja Luther [Wed, 1 Jun 2022 11:43:33 +0000 (13:43 +0200)]
create taxonnodeDto directly with taxonUuid

2 years agoref #10067, ref #3722 add parent.childNodes to taxonNode property path to allow sorti...
Andreas Müller [Wed, 1 Jun 2022 11:20:52 +0000 (13:20 +0200)]
ref #10067, ref #3722 add parent.childNodes to taxonNode property path to allow sortindex computation

* should be preliminary

2 years agoref #9359 removed duplicated manage version of jcl-over-slf4j in cdmlib
Andreas Müller [Wed, 1 Jun 2022 10:54:03 +0000 (12:54 +0200)]
ref #9359 removed duplicated manage version of jcl-over-slf4j in cdmlib

2 years agoref #10067 remove direct dependencies to javassist and hibernate-jpa-2.1 from cdmlib...
Andreas Müller [Wed, 1 Jun 2022 10:53:19 +0000 (12:53 +0200)]
ref #10067 remove direct dependencies to javassist and hibernate-jpa-2.1 from cdmlib-persistence

2 years agoref #10067 add byte-buddy dependency management
Andreas Müller [Wed, 1 Jun 2022 09:55:56 +0000 (11:55 +0200)]
ref #10067 add byte-buddy dependency management

2 years agoref #9359 manage version of jcl-over-slf4j in cdmlib
Andreas Müller [Wed, 1 Jun 2022 08:24:55 +0000 (10:24 +0200)]
ref #9359 manage version of jcl-over-slf4j in cdmlib

2 years agoref #9359 upgrade xmlgraphics-fop and -commons to latest version in cdmlib
Andreas Müller [Wed, 1 Jun 2022 08:20:22 +0000 (10:20 +0200)]
ref #9359 upgrade xmlgraphics-fop and -commons to latest version in cdmlib

2 years agoref #9359 upgrade slf4j-xxx, commons-imaging, xercesImpl, hibernate-commons-annotatio...
Andreas Müller [Wed, 1 Jun 2022 08:10:56 +0000 (10:10 +0200)]
ref #9359 upgrade slf4j-xxx, commons-imaging, xercesImpl, hibernate-commons-annotations, javassist and jakarta.validation-api to latest version in cdmlib

2 years agocleanup
Andreas Müller [Tue, 31 May 2022 22:53:32 +0000 (00:53 +0200)]
cleanup

2 years agoref #9359 javadoc
Andreas Müller [Tue, 31 May 2022 20:55:24 +0000 (22:55 +0200)]
ref #9359 javadoc

2 years agoref #9359 downgrade jboss-logging version to 3.4.3 as 3.5.0 requires java11 in cdmlib
Andreas Müller [Tue, 31 May 2022 20:53:26 +0000 (22:53 +0200)]
ref #9359 downgrade jboss-logging version to 3.4.3 as 3.5.0 requires java11 in cdmlib

2 years agoref #9359 add dependency management for jboss-logging-processor in cdmlib
Andreas Müller [Tue, 31 May 2022 20:40:45 +0000 (22:40 +0200)]
ref #9359 add dependency management for jboss-logging-processor in cdmlib

2 years agoref #9359 revert removing jboss-logging-annotations in cdmlib
Andreas Müller [Tue, 31 May 2022 20:35:51 +0000 (22:35 +0200)]
ref #9359 revert removing jboss-logging-annotations in cdmlib

2 years agoref #9359 upgrade jboss-logging to latest version and remove jboss-logging-annotation...
Andreas Müller [Tue, 31 May 2022 20:21:09 +0000 (22:21 +0200)]
ref #9359 upgrade jboss-logging to latest version and remove jboss-logging-annotations in cdmlib

2 years agoref #9359 javadoc
Andreas Müller [Tue, 31 May 2022 19:25:29 +0000 (21:25 +0200)]
ref #9359 javadoc

2 years agoref #9359 upgrade net.sf.ehcache/ehcache and org.json/json to latest version in cdmlib
Andreas Müller [Tue, 31 May 2022 19:25:12 +0000 (21:25 +0200)]
ref #9359 upgrade net.sf.ehcache/ehcache and org.json/json to latest version in cdmlib

2 years agoref #9359 upgrade xtream version 1.4.14->1.4.19 and remove xmlpull
Andreas Müller [Tue, 31 May 2022 13:26:52 +0000 (15:26 +0200)]
ref #9359 upgrade xtream version 1.4.14->1.4.19 and remove xmlpull

2 years agoref #9359 downgrade xmlpull:xmlpull to 1.1.3.1 as 1.2.0 is only available in the...
Andreas Müller [Tue, 31 May 2022 13:17:55 +0000 (15:17 +0200)]
ref #9359  downgrade xmlpull:xmlpull to 1.1.3.1 as 1.2.0 is only available in the JBoss repo which is currently switched off

2 years agoupdate metadata in parent pom
Andreas Müller [Tue, 31 May 2022 13:16:31 +0000 (15:16 +0200)]
update metadata in parent pom

2 years agoref #10067 replace deprecated hibernate validation NotEmpty by JPA version
Andreas Müller [Tue, 31 May 2022 12:12:11 +0000 (14:12 +0200)]
ref #10067 replace deprecated hibernate validation NotEmpty by JPA version

2 years agocleanup
Andreas Müller [Tue, 31 May 2022 11:19:59 +0000 (13:19 +0200)]
cleanup

2 years agocleanup some base DAOs (rename, remove @Repository, ...)
Andreas Müller [Tue, 31 May 2022 10:37:00 +0000 (12:37 +0200)]
cleanup some base DAOs (rename, remove @Repository, ...)

2 years agocleanup
Andreas Müller [Tue, 31 May 2022 10:14:00 +0000 (12:14 +0200)]
cleanup

2 years agocleanup
Andreas Müller [Tue, 31 May 2022 09:57:34 +0000 (11:57 +0200)]
cleanup

2 years agoref #9359 update joda-time, mariadb-java-client and mysql-connector-java to latest...
Andreas Müller [Tue, 31 May 2022 09:56:45 +0000 (11:56 +0200)]
ref #9359 update joda-time, mariadb-java-client and mysql-connector-java to latest version in cdmlib

2 years agoref #9359 update itextpdf to latest version in cdmlib
Andreas Müller [Tue, 31 May 2022 09:36:22 +0000 (11:36 +0200)]
ref #9359 update itextpdf to latest version in cdmlib

2 years agoref #9359 update jackson and guava to latest version in cdmlib
Andreas Müller [Tue, 31 May 2022 09:31:15 +0000 (11:31 +0200)]
ref #9359 update jackson and guava to latest version in cdmlib

2 years agoref #10067 adapt getAllPersistedClasses() to new hibernate metadata handling
Andreas Müller [Tue, 31 May 2022 09:12:30 +0000 (11:12 +0200)]
ref #10067 adapt getAllPersistedClasses() to new hibernate metadata handling

2 years agoref #9359 remove JBoss and apache incubating repository
Andreas Müller [Tue, 31 May 2022 08:16:29 +0000 (10:16 +0200)]
ref #9359 remove JBoss and apache incubating repository

2 years agoref #9359, #10067 upgrade pom to hibernate 5.4.33,hibernate-validator 6.2.3 and hiber...
Andreas Müller [Tue, 31 May 2022 00:55:18 +0000 (02:55 +0200)]
ref #9359, #10067 upgrade pom to hibernate 5.4.33,hibernate-validator 6.2.3 and hibernate-search 5.11.10

2 years agoref #9359, #10067 add lucene-sandbox
Andreas Müller [Tue, 31 May 2022 00:54:00 +0000 (02:54 +0200)]
ref #9359, #10067 add lucene-sandbox

2 years agoref #9359, #10067 prepare Lucene6+ double queries
Andreas Müller [Tue, 31 May 2022 00:52:37 +0000 (02:52 +0200)]
ref #9359, #10067 prepare Lucene6+ double queries

2 years agoref #9359, #10067 remove SortFieldOptions
Andreas Müller [Tue, 31 May 2022 00:47:11 +0000 (02:47 +0200)]
ref #9359, #10067 remove SortFieldOptions

2 years agoref #9359, #10067 remove most index boosts
Andreas Müller [Tue, 31 May 2022 00:46:30 +0000 (02:46 +0200)]
ref #9359, #10067 remove most index boosts

2 years agocleanup
Andreas Müller [Mon, 30 May 2022 21:39:01 +0000 (23:39 +0200)]
cleanup

2 years agoref #7487 fix fulltext search for proparten MAN and partial MAN+synonyms
Andreas Müller [Mon, 30 May 2022 20:56:28 +0000 (22:56 +0200)]
ref #7487 fix fulltext search for proparten MAN and partial MAN+synonyms

2 years agocleanup
Andreas Müller [Mon, 30 May 2022 20:51:45 +0000 (22:51 +0200)]
cleanup

2 years agoref #7487 adapt test
Andreas Müller [Mon, 30 May 2022 20:01:19 +0000 (22:01 +0200)]
ref #7487 adapt test

2 years agoref #10067, ref #5477 add containedIn to relatedFrom and relatedTo to adapt to hibern...
Andreas Müller [Mon, 30 May 2022 19:59:47 +0000 (21:59 +0200)]
ref #10067, ref #5477 add containedIn to relatedFrom and relatedTo to adapt to hibernate search 5.7.3

2 years agocleanup
Andreas Müller [Mon, 30 May 2022 19:56:27 +0000 (21:56 +0200)]
cleanup

2 years agominor
Andreas Müller [Mon, 30 May 2022 11:55:54 +0000 (13:55 +0200)]
minor

2 years agocleanup
Andreas Müller [Sun, 29 May 2022 20:47:49 +0000 (22:47 +0200)]
cleanup

2 years agoref #9359 update postgresql version to 42.3.6 in cdmlib
Andreas Müller [Wed, 25 May 2022 13:05:04 +0000 (15:05 +0200)]
ref #9359 update postgresql version to 42.3.6 in cdmlib

2 years agoref #10067 update to hibernate 5.3 (cont.)
Andreas Müller [Wed, 25 May 2022 11:39:09 +0000 (13:39 +0200)]
ref #10067 update to hibernate 5.3 (cont.)

2 years agoref #10067 update to hibernate-search 5.9
Andreas Müller [Wed, 25 May 2022 11:38:33 +0000 (13:38 +0200)]
ref #10067 update to hibernate-search 5.9

2 years agoref #10067 update to hibernate 5.3
Andreas Müller [Wed, 25 May 2022 11:37:49 +0000 (13:37 +0200)]
ref #10067 update to hibernate 5.3

2 years agocleanup
Andreas Müller [Wed, 25 May 2022 09:34:28 +0000 (11:34 +0200)]
cleanup

2 years agocleanup
Andreas Müller [Wed, 25 May 2022 08:39:59 +0000 (10:39 +0200)]
cleanup

2 years agoref #10067 improve handling of CdmPreferenceLookup (now ...Cache) to allow running...
Andreas Müller [Wed, 25 May 2022 07:56:52 +0000 (09:56 +0200)]
ref #10067 improve handling of CdmPreferenceLookup (now ...Cache) to allow running with >1 entity managers (e.g. during maven tests)

2 years agoref #10067, ref #3722, ref #8127 adapt handling of sortIndex after upgrade to hiberna...
Andreas Müller [Tue, 24 May 2022 17:44:07 +0000 (19:44 +0200)]
ref #10067, ref #3722, ref #8127 adapt handling of sortIndex after upgrade to hibernate5.2

2 years agocleanup
Andreas Müller [Tue, 24 May 2022 17:06:22 +0000 (19:06 +0200)]
cleanup

2 years agocleanup
Andreas Müller [Mon, 23 May 2022 20:38:05 +0000 (22:38 +0200)]
cleanup

2 years agoref #10067 fix query type in UserDaoImpl
Andreas Müller [Mon, 23 May 2022 09:36:23 +0000 (11:36 +0200)]
ref #10067 fix query type in UserDaoImpl

2 years agoref #10067 adapt SortIndexUpdaterWrapperTest to new sortIndex handling
Andreas Müller [Mon, 23 May 2022 09:22:35 +0000 (11:22 +0200)]
ref #10067 adapt SortIndexUpdaterWrapperTest to new sortIndex handling

2 years agoref #10067 remove hibernate-entitymanager from pom
Andreas Müller [Mon, 23 May 2022 08:37:21 +0000 (10:37 +0200)]
ref #10067 remove hibernate-entitymanager from pom

2 years agocleanup
Andreas Müller [Mon, 23 May 2022 07:22:13 +0000 (09:22 +0200)]
cleanup

2 years agoref #10067 change to new hibernate Query class, adapt generics and use set Parameter...
Andreas Müller [Sat, 21 May 2022 22:43:57 +0000 (00:43 +0200)]
ref #10067 change to new hibernate Query class, adapt generics and use set Parameter instead old setXXX (cont.)

2 years agoimprove paging handling in multiple DAOs
Andreas Müller [Sat, 21 May 2022 22:43:02 +0000 (00:43 +0200)]
improve paging handling in multiple DAOs

2 years agocleanup
Andreas Müller [Sat, 21 May 2022 22:40:01 +0000 (00:40 +0200)]
cleanup

2 years agoref #10067 change to new hibernate Query class, adapt generics and use set Parameter...
Andreas Müller [Sat, 21 May 2022 22:30:50 +0000 (00:30 +0200)]
ref #10067 change to new hibernate Query class, adapt generics and use set Parameter instead old setXXX

2 years agoref #10067 fix incorrect pageSize/number handling in findTaxaByName
Andreas Müller [Sat, 21 May 2022 13:29:04 +0000 (15:29 +0200)]
ref #10067 fix incorrect pageSize/number handling in findTaxaByName

2 years agoref #10067 adapt test to new LIE message format
Andreas Müller [Sat, 21 May 2022 13:28:15 +0000 (15:28 +0200)]
ref #10067 adapt test to new LIE message format

2 years agoref #10067 adapt getFlushMode() to getHibernateFlushMode()
Andreas Müller [Sat, 21 May 2022 13:27:33 +0000 (15:27 +0200)]
ref #10067 adapt getFlushMode() to getHibernateFlushMode()

2 years agoref #10067 adapt IdFieldOptions and SortFieldOptions to updated lucene/hibernate...
Andreas Müller [Sat, 21 May 2022 13:26:38 +0000 (15:26 +0200)]
ref #10067 adapt IdFieldOptions and SortFieldOptions to updated lucene/hibernate search version

2 years agoref #10067 adapt IdentifiableEntity.cacheStrategy handling to avoid problem with...
Andreas Müller [Sat, 21 May 2022 13:25:09 +0000 (15:25 +0200)]
ref #10067 adapt IdentifiableEntity.cacheStrategy handling to avoid problem with unhandled generic handling and transient getter

2 years agoref #10067 update to hibernate 5.2.18 and jadira usertypes 7.0.0.CR1
Andreas Müller [Sat, 21 May 2022 13:21:10 +0000 (15:21 +0200)]
ref #10067 update to hibernate 5.2.18 and jadira usertypes 7.0.0.CR1

2 years agocleanup
Andreas Müller [Sat, 21 May 2022 12:34:20 +0000 (14:34 +0200)]
cleanup

2 years agocleanup
Andreas Müller [Fri, 20 May 2022 19:18:52 +0000 (21:18 +0200)]
cleanup

2 years agocleanup
Andreas Müller [Fri, 20 May 2022 19:18:52 +0000 (21:18 +0200)]
cleanup

2 years agoref #9497 fix some issues in PasswordResetServiceTest to make it more stable
Andreas Müller [Fri, 20 May 2022 15:50:57 +0000 (17:50 +0200)]
ref #9497 fix some issues  in PasswordResetServiceTest to make it more stable

2 years agocleanup
Andreas Müller [Fri, 20 May 2022 15:32:22 +0000 (17:32 +0200)]
cleanup

2 years agofix BibliographicAuthorParserTest encoding
Andreas Müller [Fri, 20 May 2022 15:30:06 +0000 (17:30 +0200)]
fix BibliographicAuthorParserTest encoding

2 years agominor
Andreas Müller [Tue, 10 May 2022 09:33:39 +0000 (11:33 +0200)]
minor

2 years agominor
Andreas Müller [Tue, 10 May 2022 07:11:59 +0000 (09:11 +0200)]
minor

2 years agoref #10003: new statusDto and add status to derivedUnitDTO
Katja Luther [Thu, 5 May 2022 11:20:46 +0000 (13:20 +0200)]
ref  #10003: new statusDto and add status to derivedUnitDTO

2 years agominor
Katja Luther [Thu, 28 Apr 2022 10:03:21 +0000 (12:03 +0200)]
minor

2 years agocleanup
Andreas Müller [Thu, 7 Apr 2022 13:32:49 +0000 (15:32 +0200)]
cleanup

2 years agocleanup
Andreas Müller [Thu, 7 Apr 2022 08:48:59 +0000 (10:48 +0200)]
cleanup

2 years agoUpdating develop poms back to pre merge state
jenkins [Wed, 6 Apr 2022 15:25:13 +0000 (17:25 +0200)]
Updating develop poms back to pre merge state

2 years agoMerge branch 'master' into develop
jenkins [Wed, 6 Apr 2022 15:25:12 +0000 (17:25 +0200)]
Merge branch 'master' into develop

2 years agoupdating develop poms to master versions to avoid merge conflicts
jenkins [Wed, 6 Apr 2022 15:25:10 +0000 (17:25 +0200)]
updating develop poms to master versions to avoid merge conflicts

2 years agoMerge branch 'release/5.31.0' 5.31.0
jenkins [Wed, 6 Apr 2022 15:25:04 +0000 (17:25 +0200)]
Merge branch 'release/5.31.0'

2 years agoupdating poms for branch'release/5.31.0' with non-snapshot versions
jenkins [Wed, 6 Apr 2022 15:04:42 +0000 (17:04 +0200)]
updating poms for branch'release/5.31.0' with non-snapshot versions

2 years agoupdating poms for 5.32.0-SNAPSHOT development
jenkins [Wed, 6 Apr 2022 13:52:42 +0000 (15:52 +0200)]
updating poms for 5.32.0-SNAPSHOT development

2 years agouse https for kml icons origin/release/5.31.0
Katja Luther [Wed, 6 Apr 2022 12:26:59 +0000 (14:26 +0200)]
use https for kml icons

2 years agoref #9999 NPE fix in referencing object formatting
Andreas Müller [Tue, 5 Apr 2022 17:36:21 +0000 (19:36 +0200)]
ref #9999 NPE fix in referencing object formatting

2 years agoref #9999 add referencing object formatting for quantitative data, temporal data...
Andreas Müller [Tue, 5 Apr 2022 17:34:55 +0000 (19:34 +0200)]
ref #9999 add referencing object formatting for quantitative data, temporal data and individual associations

2 years agofix #10020 add mediahub to metadataservice transformation including tests
Andreas Müller [Mon, 4 Apr 2022 17:38:06 +0000 (19:38 +0200)]
fix #10020 add mediahub to metadataservice transformation including tests

2 years agofix case statement
Katja Luther [Mon, 4 Apr 2022 10:38:50 +0000 (12:38 +0200)]
fix case statement

2 years agofix case statement
Katja Luther [Mon, 4 Apr 2022 09:25:09 +0000 (11:25 +0200)]
fix case statement

2 years agobetter handling of createEmptyTerm with language
Katja Luther [Mon, 4 Apr 2022 08:15:20 +0000 (10:15 +0200)]
better handling of createEmptyTerm with language

2 years agoadapt test to term creation with language
Katja Luther [Fri, 1 Apr 2022 12:35:21 +0000 (14:35 +0200)]
adapt test to term creation with language

2 years agoterm creation with language (cont.)
Andreas Müller [Fri, 1 Apr 2022 12:30:46 +0000 (14:30 +0200)]
term creation with language (cont.)

- remove deprecated method and keep old factory methods
- remove unnessary second constructor

2 years agoterm creation with language
Katja Luther [Fri, 1 Apr 2022 10:34:39 +0000 (12:34 +0200)]
term creation with language

2 years agoref #9965: adapt face cache to specimen status
Katja Luther [Mon, 28 Mar 2022 11:53:46 +0000 (13:53 +0200)]
ref #9965: adapt face cache to specimen status

2 years agoref #9999 improve ReferencingObjectFormatter for CategoricalData, StateData and TextD...
Andreas Müller [Thu, 24 Mar 2022 13:29:50 +0000 (14:29 +0100)]
ref #9999 improve ReferencingObjectFormatter for CategoricalData, StateData and TextData and add test class for ReferencingObjectFormatter

2 years agoref #9932 minor
Andreas Müller [Wed, 23 Mar 2022 13:49:05 +0000 (14:49 +0100)]
ref #9932 minor

2 years agoref #9932 handle status correctly in ImportDeduplicationHelper.reset()
Andreas Müller [Wed, 23 Mar 2022 13:46:07 +0000 (14:46 +0100)]
ref #9932 handle status correctly in ImportDeduplicationHelper.reset()

2 years agoref #9932 improve BibliographicAuthorParser and -Test
Andreas Müller [Wed, 23 Mar 2022 13:45:02 +0000 (14:45 +0100)]
ref #9932 improve BibliographicAuthorParser and -Test

2 years agocleanup
Andreas Müller [Wed, 23 Mar 2022 13:42:30 +0000 (14:42 +0100)]
cleanup