cdmlib.git
6 years agocleanup
Andreas Müller [Fri, 30 Mar 2018 09:31:49 +0000 (11:31 +0200)]
cleanup

6 years agonew PreferencePredicate for publish flag preference
Katja Luther [Fri, 20 Apr 2018 05:44:36 +0000 (07:44 +0200)]
new PreferencePredicate for publish flag preference

6 years agofix #7354 reducing log level
Andreas Kohlbecker [Thu, 19 Apr 2018 12:23:29 +0000 (14:23 +0200)]
fix #7354 reducing log level

6 years agofix #7354 DerivedUnitConverter handled typeDesignations correctly and abstains from...
Andreas Kohlbecker [Thu, 19 Apr 2018 12:10:32 +0000 (14:10 +0200)]
fix #7354 DerivedUnitConverter handled typeDesignations correctly and abstains from persising anything

6 years agowhitespace
Andreas Kohlbecker [Thu, 19 Apr 2018 11:44:33 +0000 (13:44 +0200)]
whitespace

6 years agoremoving non java doc method comment
Andreas Kohlbecker [Thu, 19 Apr 2018 11:43:58 +0000 (13:43 +0200)]
removing non java doc method comment

6 years agoRemove unused occurrence service method (2)
Patrick Plitzner [Wed, 18 Apr 2018 12:35:23 +0000 (14:35 +0200)]
Remove unused occurrence service method (2)

6 years agoRemove unused occurrence service method
Patrick Plitzner [Wed, 18 Apr 2018 12:16:51 +0000 (14:16 +0200)]
Remove unused occurrence service method

6 years agoref #7095 Fix NPE in specimen selection dialog
Patrick Plitzner [Wed, 18 Apr 2018 08:26:16 +0000 (10:26 +0200)]
ref #7095 Fix NPE in specimen selection dialog

6 years agoref #7095 Add property paths to some methods
Patrick Plitzner [Wed, 18 Apr 2018 07:10:57 +0000 (09:10 +0200)]
ref #7095 Add property paths to some methods

6 years agoref #7095 Add progress monitor to working set service (unstable)
Patrick Plitzner [Wed, 18 Apr 2018 04:33:37 +0000 (06:33 +0200)]
ref #7095 Add progress monitor to working set service (unstable)

6 years agoref #7095 Move specimen and description loading to service layer
Patrick Plitzner [Tue, 17 Apr 2018 12:55:40 +0000 (14:55 +0200)]
ref #7095 Move specimen and description loading to service layer

6 years agoref #7348 moving RegistrationDTO related classes from cdm-vaadin to cdmlib-services
Andreas Kohlbecker [Wed, 11 Apr 2018 14:53:22 +0000 (16:53 +0200)]
ref #7348 moving RegistrationDTO related classes from cdm-vaadin to cdmlib-services

6 years agoref #7086 Add getter for structure and property
Patrick Plitzner [Wed, 11 Apr 2018 07:51:37 +0000 (09:51 +0200)]
ref #7086 Add getter for structure and property

6 years agominor
Andreas Müller [Wed, 28 Mar 2018 19:50:07 +0000 (21:50 +0200)]
minor

6 years agofix failing clone tests
Andreas Müller [Wed, 28 Mar 2018 18:02:28 +0000 (20:02 +0200)]
fix failing clone tests

6 years agoref #7095 Fix convenience method for CategoricalData
Patrick Plitzner [Wed, 28 Mar 2018 14:02:11 +0000 (16:02 +0200)]
ref #7095 Fix convenience method for CategoricalData

6 years agoref #7336, ref #7334 add pro parte synonym, partial synonym and partial misapplied...
Andreas Müller [Wed, 28 Mar 2018 12:39:39 +0000 (14:39 +0200)]
ref #7336, ref #7334 add pro parte synonym, partial synonym and partial misapplied name as taxon relationship types

6 years agofix clone method for TaxonBase
Andreas Müller [Wed, 28 Mar 2018 12:05:27 +0000 (14:05 +0200)]
fix clone method for TaxonBase

6 years agoref #5762 adapt clone method in IdentifiableEntity as rights are reusable now
Andreas Müller [Wed, 28 Mar 2018 12:04:46 +0000 (14:04 +0200)]
ref #5762 adapt clone method in IdentifiableEntity as rights are reusable now

6 years agocleanup
Andreas Müller [Wed, 28 Mar 2018 11:45:21 +0000 (13:45 +0200)]
cleanup

6 years agoalso revert the test changes
Katja Luther [Wed, 28 Mar 2018 12:15:29 +0000 (14:15 +0200)]
also revert the test changes

6 years agorevert null check in merge
Katja Luther [Wed, 28 Mar 2018 11:59:52 +0000 (13:59 +0200)]
revert null check in merge

6 years agominor
Katja Luther [Wed, 28 Mar 2018 10:46:23 +0000 (12:46 +0200)]
minor

6 years agoavoid potential NPE
Katja Luther [Wed, 28 Mar 2018 10:43:26 +0000 (12:43 +0200)]
avoid potential NPE

6 years agosmaller changes and code cleaning
Katja Luther [Wed, 28 Mar 2018 10:36:01 +0000 (12:36 +0200)]
smaller changes and code cleaning

6 years agomoving AlternativeUnitilsJUnit4TestClassRunner to org.unitils
Andreas Kohlbecker [Tue, 27 Mar 2018 13:48:34 +0000 (15:48 +0200)]
moving AlternativeUnitilsJUnit4TestClassRunner to org.unitils

6 years agomoving AlternativeUnitilsJUnit4TestClassRunner to org.unitils
Andreas Kohlbecker [Tue, 27 Mar 2018 13:47:32 +0000 (15:47 +0200)]
moving AlternativeUnitilsJUnit4TestClassRunner to org.unitils

6 years agoref #7331 test created and loging more details at level TRACE
Andreas Kohlbecker [Tue, 27 Mar 2018 12:43:57 +0000 (14:43 +0200)]
ref #7331 test created and loging more details at level TRACE

6 years agocleanup
Andreas Müller [Fri, 23 Mar 2018 14:11:30 +0000 (15:11 +0100)]
cleanup

6 years agoref #7328 make distanceString method static and public
Andreas Müller [Fri, 23 Mar 2018 14:11:17 +0000 (15:11 +0100)]
ref  #7328 make distanceString method static and public

6 years agoref #6484 Adjust count method to find method to return the same number
Patrick Plitzner [Fri, 23 Mar 2018 11:00:50 +0000 (12:00 +0100)]
ref #6484 Adjust count method to find method to return the same number

 - performance can still be improved by integrating AssignmentStatus
and/or indirectlyAssociatedSpecimen into the HQL query

6 years agoref #6484 Move enum AssignmentStatus to cdm-persistence
Patrick Plitzner [Fri, 23 Mar 2018 09:41:37 +0000 (10:41 +0100)]
ref #6484 Move enum AssignmentStatus to cdm-persistence

6 years agoref #7325 applying taxeditor changeset (98baf5f ref #6389) onto cdmlib-cache
Andreas Kohlbecker [Thu, 22 Mar 2018 14:47:57 +0000 (15:47 +0100)]
ref #7325 applying taxeditor changeset (98baf5f ref #6389) onto cdmlib-cache

6 years agofix #7209 removing scm entries from maven submodules
Andreas Kohlbecker [Thu, 22 Mar 2018 14:18:17 +0000 (15:18 +0100)]
fix #7209 removing scm entries from maven submodules

6 years agoref #7324 Add new service method getFieldUnitsForGatheringEvent()
Patrick Plitzner [Wed, 21 Mar 2018 18:10:28 +0000 (19:10 +0100)]
ref #7324 Add new service method getFieldUnitsForGatheringEvent()

6 years agofix #7323 adding missing uuid match check in furtherVotingDescissions()
Andreas Kohlbecker [Wed, 21 Mar 2018 17:18:46 +0000 (18:18 +0100)]
fix #7323 adding missing uuid match check in furtherVotingDescissions()

6 years agoref #7269 workaround for redmine bug https://www.redmine.org/issues/28383
Andreas Kohlbecker [Tue, 20 Mar 2018 15:37:28 +0000 (16:37 +0100)]
ref #7269  workaround for redmine bug https://redmine.org/issues/28383

6 years agoref #7269 fixing bug regarding Curator field and extending test
Andreas Kohlbecker [Mon, 19 Mar 2018 17:00:08 +0000 (18:00 +0100)]
ref #7269 fixing bug regarding Curator field and extending test

6 years agoref #7269 ExternalServiceException more detailed information
Andreas Kohlbecker [Mon, 19 Mar 2018 14:19:27 +0000 (15:19 +0100)]
ref #7269 ExternalServiceException more detailed information

6 years agoref #7269 setting curator when posting messages (not yet working)
Andreas Kohlbecker [Mon, 19 Mar 2018 14:18:44 +0000 (15:18 +0100)]
ref #7269 setting curator when posting messages (not yet working)

6 years agoavoid NPE in TaxonNodeDtoComparator
Katja Luther [Thu, 15 Mar 2018 11:15:55 +0000 (12:15 +0100)]
avoid NPE in TaxonNodeDtoComparator

6 years agoadd some more CdmPermissionClasses
Andreas Müller [Thu, 15 Mar 2018 10:40:08 +0000 (11:40 +0100)]
add some more CdmPermissionClasses

6 years agoadd some more CdmPermissionClasses
Andreas Müller [Wed, 14 Mar 2018 10:30:20 +0000 (11:30 +0100)]
add some more CdmPermissionClasses

6 years agoerror handling for term compare with missing vocabularies
Andreas Müller [Wed, 14 Mar 2018 10:29:51 +0000 (11:29 +0100)]
error handling for term compare with missing vocabularies

6 years agominor
Katja Luther [Tue, 13 Mar 2018 11:42:01 +0000 (12:42 +0100)]
minor

6 years agoref #4347 Allow DOIs for IArticle
Andreas Müller [Mon, 12 Mar 2018 15:07:47 +0000 (16:07 +0100)]
ref #4347 Allow DOIs for IArticle

6 years agocleanup
Andreas Müller [Fri, 9 Mar 2018 18:56:12 +0000 (19:56 +0100)]
cleanup

6 years agofix #7308 Add nomen oblitum to zoological taxon name status
Andreas Müller [Fri, 9 Mar 2018 18:50:07 +0000 (19:50 +0100)]
fix #7308 Add nomen oblitum to zoological taxon name status

6 years agoref #6158 avoid URL redirects
Patrick Plitzner [Fri, 9 Mar 2018 14:44:16 +0000 (15:44 +0100)]
ref #6158 avoid URL redirects

6 years agoref #2380: improve implementation of Dto for use in taxonnavigator
Katja Luther [Fri, 9 Mar 2018 12:04:25 +0000 (13:04 +0100)]
ref #2380: improve implementation of Dto for use in taxonnavigator

6 years agocleanup CdmPermissionClass
Andreas Müller [Thu, 8 Mar 2018 11:32:07 +0000 (12:32 +0100)]
cleanup CdmPermissionClass

6 years agodoc
Andreas Müller [Wed, 7 Mar 2018 15:54:47 +0000 (16:54 +0100)]
doc

6 years agominor
Katja Luther [Wed, 7 Mar 2018 12:29:34 +0000 (13:29 +0100)]
minor

6 years agorevert test changes
Katja Luther [Wed, 7 Mar 2018 12:15:33 +0000 (13:15 +0100)]
revert test changes

6 years agorevert changes in listChildNodesAsUuidAndTitleCache
Katja Luther [Wed, 7 Mar 2018 12:04:17 +0000 (13:04 +0100)]
revert changes in listChildNodesAsUuidAndTitleCache

6 years agorevert accidently commited changes
Katja Luther [Wed, 7 Mar 2018 11:36:51 +0000 (12:36 +0100)]
revert accidently commited changes

6 years agominor
Katja Luther [Wed, 7 Mar 2018 11:32:46 +0000 (12:32 +0100)]
minor

6 years agosimple taxon list import
Katja Luther [Wed, 7 Mar 2018 11:30:00 +0000 (12:30 +0100)]
simple taxon list import

6 years agoadapted deleteResult
Katja Luther [Wed, 7 Mar 2018 11:02:52 +0000 (12:02 +0100)]
adapted deleteResult

6 years agoDeleteResult should contain a list of deleted objects, update delete methods
Katja Luther [Wed, 7 Mar 2018 10:58:19 +0000 (11:58 +0100)]
DeleteResult should contain a list of deleted objects, update delete methods

6 years agocleanup
Andreas Müller [Wed, 7 Mar 2018 10:27:16 +0000 (11:27 +0100)]
cleanup

6 years agofix UTF8 issue in NonViralNameParserImplTest
Andreas Müller [Wed, 7 Mar 2018 10:17:12 +0000 (11:17 +0100)]
fix UTF8 issue in NonViralNameParserImplTest

6 years agooverride includeResult in deleteResult
Katja Luther [Wed, 7 Mar 2018 09:00:58 +0000 (10:00 +0100)]
override includeResult in deleteResult

6 years agoref #7285 add uuids for cohort and hyporder
Andreas Müller [Wed, 7 Mar 2018 08:59:23 +0000 (09:59 +0100)]
ref #7285 add uuids for cohort and hyporder

6 years agoref #7304 reduce author part in booksections to 2 words in name parser
Andreas Müller [Wed, 7 Mar 2018 08:58:15 +0000 (09:58 +0100)]
ref #7304 reduce author part in booksections to 2 words in name parser

6 years agocleanup
Andreas Müller [Wed, 7 Mar 2018 08:57:12 +0000 (09:57 +0100)]
cleanup

6 years agoFix NPE in occurrence test
Patrick Plitzner [Tue, 6 Mar 2018 15:02:57 +0000 (16:02 +0100)]
Fix NPE in occurrence test

6 years agominor
Katja Luther [Tue, 6 Mar 2018 08:22:56 +0000 (09:22 +0100)]
minor

6 years agofix 7292: fix Exception when searching for all taxa
Katja Luther [Mon, 5 Mar 2018 12:44:41 +0000 (13:44 +0100)]
fix 7292: fix Exception when searching for all taxa

6 years agoref #6668 Include deleted derivatives recursively into DeleteResult
Patrick Plitzner [Fri, 2 Mar 2018 08:39:54 +0000 (09:39 +0100)]
ref #6668 Include deleted derivatives recursively into DeleteResult

6 years agocleanup
Andreas Müller [Wed, 21 Feb 2018 13:41:44 +0000 (14:41 +0100)]
cleanup

6 years agoref #7280 moving redmine integration server to edit-int
Andreas Kohlbecker [Mon, 26 Feb 2018 16:46:31 +0000 (17:46 +0100)]
ref #7280 moving redmine integration server to edit-int

6 years agoref #7269 improving performance by factor 1.3
Andreas Kohlbecker [Mon, 26 Feb 2018 12:10:46 +0000 (13:10 +0100)]
ref #7269 improving performance by factor 1.3

6 years agoref #7269 redmine issues made private and public methods in interface
Andreas Kohlbecker [Mon, 26 Feb 2018 09:56:16 +0000 (10:56 +0100)]
ref #7269 redmine issues made private and public methods in interface

6 years agoref #7269 making redmine issues private
Andreas Kohlbecker [Thu, 22 Feb 2018 17:18:00 +0000 (18:18 +0100)]
ref #7269 making redmine issues private

6 years agoref #7269 pulling public service methods into service interface
Andreas Kohlbecker [Thu, 22 Feb 2018 16:46:59 +0000 (17:46 +0100)]
ref #7269 pulling public service methods into service interface

6 years agoextending CdmPermissionClass
Andreas Kohlbecker [Thu, 22 Feb 2018 15:43:45 +0000 (16:43 +0100)]
extending CdmPermissionClass

6 years agoextending CdmPermissionClass
Andreas Kohlbecker [Thu, 22 Feb 2018 14:42:07 +0000 (15:42 +0100)]
extending CdmPermissionClass

6 years agoextending CdmPermissionClass
Andreas Kohlbecker [Thu, 22 Feb 2018 14:38:34 +0000 (15:38 +0100)]
extending CdmPermissionClass

6 years agoref #7269 fixing test environment to allow running RedmineRegistrationMessageServiceT...
Andreas Kohlbecker [Thu, 22 Feb 2018 11:55:39 +0000 (12:55 +0100)]
ref #7269 fixing test environment to allow running RedmineRegistrationMessageServiceTest in the surefire test suite:
  - fixing cdmlib-ext test application context
  - avoiding CdmRepository as autowired spring bean

6 years agolowering loglevel in test
Andreas Kohlbecker [Thu, 22 Feb 2018 11:43:43 +0000 (12:43 +0100)]
lowering loglevel in test

6 years agoref #7287 reverting DerivedUnitFacade test back to using tests
Andreas Kohlbecker [Thu, 22 Feb 2018 11:41:29 +0000 (12:41 +0100)]
ref #7287 reverting DerivedUnitFacade test back to using tests

6 years agoref #7287 fixing bug
Andreas Kohlbecker [Thu, 22 Feb 2018 11:31:31 +0000 (12:31 +0100)]
ref #7287 fixing bug

6 years agoref #7289 suppressing HHH90000003
Andreas Kohlbecker [Thu, 22 Feb 2018 11:08:52 +0000 (12:08 +0100)]
ref #7289 suppressing HHH90000003

6 years agoref #7287 base test class for all unit tests which need terms being initialized
Andreas Kohlbecker [Thu, 22 Feb 2018 10:30:51 +0000 (11:30 +0100)]
ref #7287 base test class for all unit tests which need terms being initialized

6 years agosilencing chatty test
Andreas Kohlbecker [Thu, 22 Feb 2018 10:00:18 +0000 (11:00 +0100)]
silencing chatty test

6 years agosilencing chatty test
Andreas Kohlbecker [Thu, 22 Feb 2018 07:39:04 +0000 (08:39 +0100)]
silencing chatty test

6 years agosilencing chatty test
Andreas Kohlbecker [Wed, 21 Feb 2018 14:44:20 +0000 (15:44 +0100)]
silencing chatty test

6 years agoref #7269 comment
Andreas Kohlbecker [Tue, 20 Feb 2018 18:04:21 +0000 (19:04 +0100)]
ref #7269 comment

6 years agofix #7269 implementing RedmineRegistrationMessageService
Andreas Kohlbecker [Tue, 20 Feb 2018 18:00:01 +0000 (19:00 +0100)]
fix #7269 implementing RedmineRegistrationMessageService

6 years agotypo
Andreas Kohlbecker [Tue, 20 Feb 2018 17:57:32 +0000 (18:57 +0100)]
typo

6 years agofixing test application context for cdmlib-ext
Andreas Kohlbecker [Fri, 16 Feb 2018 14:43:31 +0000 (15:43 +0100)]
fixing test application context for cdmlib-ext

6 years agocreating parent directories if missing
Andreas Kohlbecker [Fri, 16 Feb 2018 13:50:41 +0000 (14:50 +0100)]
creating parent directories if missing

6 years agomoving AlternativeUnitilsJUnit4TestClassRunner from cdm-vaadin to cdmlib-test
Andreas Kohlbecker [Fri, 16 Feb 2018 12:58:06 +0000 (13:58 +0100)]
moving AlternativeUnitilsJUnit4TestClassRunner from cdm-vaadin to cdmlib-test

6 years agofix #7277 add µm to MeasurementUnit
Andreas Müller [Mon, 19 Feb 2018 15:04:38 +0000 (16:04 +0100)]
fix #7277 add µm to MeasurementUnit

6 years agocleanup
Andreas Müller [Mon, 19 Feb 2018 15:03:12 +0000 (16:03 +0100)]
cleanup

6 years agofix #6547: implement unplaced/excluded comparison also for TaxonNodeByNameComparator
Katja Luther [Mon, 19 Feb 2018 12:46:52 +0000 (13:46 +0100)]
fix #6547: implement unplaced/excluded comparison also for TaxonNodeByNameComparator

6 years agocleanup
Andreas Müller [Mon, 19 Feb 2018 09:45:08 +0000 (10:45 +0100)]
cleanup

6 years agofix #7249: deleteTypeDesignation for uuids needs to be transactional
Katja Luther [Fri, 16 Feb 2018 12:55:28 +0000 (13:55 +0100)]
fix  #7249: deleteTypeDesignation for uuids needs to be transactional