+/**
+* Copyright (C) 2007 EDIT
+* European Distributed Institute of Taxonomy
+* http://www.e-taxonomy.eu
+*
+* The contents of this file are subject to the Mozilla Public License Version 1.1
+* See LICENSE.TXT at the top of this package for the full license terms.
+*/
+
+package eu.etaxonomy.cdm.io.specimen.excel.in;
+
+import java.util.HashMap;
+import java.util.Set;
+import java.util.UUID;
+
+import org.apache.commons.lang.StringUtils;
+import org.apache.log4j.Logger;
+import org.springframework.stereotype.Component;
+
+import eu.etaxonomy.cdm.common.CdmUtils;
+import eu.etaxonomy.cdm.io.common.ICdmIO;
+import eu.etaxonomy.cdm.io.excel.common.ExcelImporterBase;
+import eu.etaxonomy.cdm.model.common.ExtensionType;
+
+/**
+ * @author p.kelbert
+ * @created 29.10.2008
+ * @version 1.0
+ */
+@Component
+public class ExtensionTypeExcelImport extends ExcelImporterBase<SpecimenCdmExcelImportState> implements ICdmIO<SpecimenCdmExcelImportState> {
+ private static final Logger logger = Logger.getLogger(ExtensionTypeExcelImport.class);
+
+ private static final String WORKSHEET_NAME = "ExtensionTypes";
+
+ private static final String UUID_COLUMN = "UUID";
+ private static final String LABEL_COLUMN = "Label";
+ private static final String ABBREVIATION_COLUMN = "Abbreviation";
+ private static final String DESCRIPTION_COLUMN = "Description";
+ private static final String POSTFIX_COLUMN = "Postfix";
+
+
+ public ExtensionTypeExcelImport() {
+ super();
+ }
+
+ @Override
+ protected boolean analyzeRecord(HashMap<String, String> record, SpecimenCdmExcelImportState state) {
+ boolean success = true;
+ Set<String> keys = record.keySet();
+
+ NamedAreaLevellRow row = new NamedAreaLevellRow();
+ state.setNamedAreaLabelRow(row);
+
+ for (String originalKey: keys) {
+ Integer index = 0;
+ String indexedKey = CdmUtils.removeDuplicateWhitespace(originalKey.trim()).toString();
+ String[] split = indexedKey.split("_");
+ String key = split[0];
+ if (split.length > 1){
+ String indexString = split[split.length - 1];
+ try {
+ index = Integer.valueOf(indexString);
+ } catch (NumberFormatException e) {
+ String message = "Index must be integer";
+ logger.error(message);
+ continue;
+ }
+ }
+
+ String value = (String) record.get(indexedKey);
+ if (! StringUtils.isBlank(value)) {
+ if (logger.isDebugEnabled()) { logger.debug(key + ": " + value); }
+ value = CdmUtils.removeDuplicateWhitespace(value.trim()).toString();
+ }else{
+ continue;
+ }
+
+ if (key.equalsIgnoreCase(UUID_COLUMN)) {
+ row.setUuid(UUID.fromString(value)); //VALIDATE UUID
+ } else if(key.equalsIgnoreCase(LABEL_COLUMN)) {
+ row.setLabel(value);
+ } else if(key.equalsIgnoreCase(ABBREVIATION_COLUMN)) {
+ row.setAbbreviation(value);
+ } else if(key.equalsIgnoreCase(DESCRIPTION_COLUMN)) {
+ row.setDescription(value);
+ } else if(key.equalsIgnoreCase(POSTFIX_COLUMN)) {
+ row.setPostfix(value);
+ }else {
+ success = false;
+ logger.error("Unexpected column header " + key);
+ }
+ }
+ return success;
+ }
+
+
+ @Override
+ protected boolean firstPass(SpecimenCdmExcelImportState state) {
+ NamedAreaLevellRow row = state.getNamedAreaLabelRow();
+
+ //level
+ UUID uuid = row.getUuid();
+ String label = row.getAbbreviation();
+ String text = row.getDescription();
+ String labelAbbrev = row.getAbbreviation();
+
+ ExtensionType term = getExtensionType(state, uuid, label, text, labelAbbrev);
+
+ if (StringUtils.isNotBlank(row.getPostfix())){
+ state.putPostfixExtensionType(row.getPostfix(), term);
+ }
+
+ //save
+ getTermService().save(term);
+ return true;
+ }
+
+
+
+ @Override
+ protected boolean secondPass(SpecimenCdmExcelImportState state) {
+ //no second path defined yet
+ return true;
+ }
+
+ /* (non-Javadoc)
+ * @see eu.etaxonomy.cdm.io.common.CdmIoBase#doCheck(eu.etaxonomy.cdm.io.common.IoStateBase)
+ */
+ @Override
+ protected boolean doCheck(SpecimenCdmExcelImportState state) {
+ logger.warn("Validation not yet implemented for " + this.getClass().getSimpleName());
+ return true;
+ }
+
+ protected String getWorksheetName() {
+ return WORKSHEET_NAME;
+ }
+
+ @Override
+ protected boolean needsNomenclaturalCode() {
+ return false;
+ }
+
+
+ @Override
+ protected boolean isIgnore(SpecimenCdmExcelImportState state) {
+ return !state.getConfig().isDoExtensionTypes();
+ }
+
+
+}
BGBM BDI Projects / cdmlib.git / commitdiff