// $Id$\r
/**\r
* Copyright (C) 2007 EDIT\r
-* European Distributed Institute of Taxonomy \r
+* European Distributed Institute of Taxonomy\r
* http://www.e-taxonomy.eu\r
-* \r
+*\r
* The contents of this file are subject to the Mozilla Public License Version 1.1\r
* See LICENSE.TXT at the top of this package for the full license terms.\r
*/\r
\r
/**\r
* TODO write controller documentation\r
- * \r
+ *\r
* @author a.kohlbecker\r
* @date 20.07.2009\r
*\r
@RequestMapping(value = {"/taxon/{uuid}"})\r
public class TaxonController extends AnnotatableController<TaxonBase, ITaxonService>\r
{\r
- public static final Logger logger = Logger.getLogger(TaxonController.class);\r
- \r
- @Autowired\r
- private IOccurrenceService occurrenceService;\r
- @Autowired\r
- private INameService nameService;\r
- \r
- protected static final List<String> TAXONNODE_INIT_STRATEGY = Arrays.asList(new String []{\r
- "taxonNodes"\r
- });\r
- \r
- public TaxonController(){\r
- super();\r
- setInitializationStrategy(Arrays.asList(new String[]{"$","name.nomenclaturalReference"}));\r
- }\r
- \r
-\r
- @Autowired\r
- public void setService(ITaxonService service) {\r
- this.service = service;\r
- }\r
- \r
-\r
- /**\r
- * Get the set of accepted {@link Taxon} entities for a given\r
- * {@link TaxonBase} entity identified by the <code>{taxon-uuid}</code>.\r
- * <p>\r
- * URI: <b>/{datasource-name}/taxon/{taxon-uuid}/accepted</b>\r
- * \r
- * @param request\r
- * @param response\r
- * @return a set on a list of {@link Taxon} entities which are initialized\r
- * using the following initialization strategy:\r
- * {@link #DEFAULT_INIT_STRATEGY}\r
- * @throws IOException\r
- */\r
- @RequestMapping(value = "accepted", method = RequestMethod.GET)\r
- public Set<TaxonBase> doGetAccepted(\r
- @PathVariable("uuid") UUID uuid,\r
- HttpServletRequest request, \r
- HttpServletResponse response) throws IOException {\r
- logger.info("getAccepted() " + request.getServletPath());\r
- TaxonBase tb = service.load(uuid);\r
- HashSet<TaxonBase> resultset = new HashSet<TaxonBase>();\r
- if(tb instanceof Taxon){\r
- //the taxon already is accepted\r
- //FIXME take the current view into account once views are implemented!!!\r
- resultset.add((Taxon)tb);\r
- } else {\r
- Synonym syn = (Synonym)tb;\r
- resultset.addAll(syn.getAcceptedTaxa());\r
- //TODO init Synonyms\r
- }\r
- return resultset;\r
- }\r
- \r
- @RequestMapping(value = "taxonNodes", method = RequestMethod.GET)\r
- public Set<TaxonNode> doGetTaxonNodes(\r
- @PathVariable("uuid") UUID uuid,\r
- HttpServletRequest request, \r
- HttpServletResponse response) throws IOException {\r
- TaxonBase tb = service.load(uuid, TAXONNODE_INIT_STRATEGY);\r
- if(tb instanceof Taxon){\r
- return ((Taxon)tb).getTaxonNodes();\r
- } else {\r
- HttpStatusMessage.UUID_REFERENCES_WRONG_TYPE.send(response);\r
- return null;\r
- }\r
- }\r
- \r
- @RequestMapping(value = "specimensOrObersvations", method = RequestMethod.GET)\r
- public ModelAndView doListSpecimensOrObersvations(\r
- @PathVariable("uuid") UUID uuid,\r
- HttpServletRequest request, \r
- HttpServletResponse response) throws IOException {\r
- logger.info("doListSpecimensOrObersvations() - " + request.getServletPath());\r
- \r
- ModelAndView mv = new ModelAndView();\r
-\r
- TaxonBase tb = service.load(uuid);\r
- \r
- List<OrderHint> orderHints = new ArrayList<OrderHint>();\r
- orderHints.add(new OrderHint("titleCache", SortOrder.DESCENDING));\r
- \r
- if(tb instanceof Taxon){\r
- List<SpecimenOrObservationBase> specimensOrObersvations = occurrenceService.listByAnyAssociation(\r
- null, (Taxon)tb, null, 0, orderHints, null);\r
- mv.addObject(specimensOrObersvations);\r
- } else {\r
- HttpStatusMessage.UUID_REFERENCES_WRONG_TYPE.send(response);\r
- return null;\r
- }\r
- \r
- return mv;\r
- }\r
- \r
- @RequestMapping(value = "taggedName", method = RequestMethod.GET)\r
- public ModelAndView doGetTaggedName(\r
- @PathVariable("uuid") UUID uuid,\r
- HttpServletRequest request, \r
- HttpServletResponse response) throws IOException {\r
- logger.info("doGetDescriptionElementsByType() - " + request.getServletPath());\r
- \r
- ModelAndView mv = new ModelAndView();\r
- \r
- TaxonBase tb = service.load(uuid, Arrays.asList(new String[] {"name"}));\r
- mv.addObject(nameService.getTaggedName(tb.getName().getUuid()));\r
- return mv;\r
- }\r
- \r
+ public static final Logger logger = Logger.getLogger(TaxonController.class);\r
+\r
+ @Autowired\r
+ private IOccurrenceService occurrenceService;\r
+ @Autowired\r
+ private INameService nameService;\r
+\r
+ protected static final List<String> TAXONNODE_INIT_STRATEGY = Arrays.asList(new String []{\r
+ "taxonNodes"\r
+ });\r
+\r
+ public TaxonController(){\r
+ super();\r
+ setInitializationStrategy(Arrays.asList(new String[]{"$","name.nomenclaturalReference"}));\r
+ }\r
+\r
+\r
+ @Autowired\r
+ public void setService(ITaxonService service) {\r
+ this.service = service;\r
+ }\r
+\r
+\r
+ /**\r
+ * Get the set of accepted {@link Taxon} entities for a given\r
+ * {@link TaxonBase} entity identified by the <code>{taxon-uuid}</code>.\r
+ * <p>\r
+ * URI: <b>/{datasource-name}/taxon/{taxon-uuid}/accepted</b>\r
+ *\r
+ * @param request\r
+ * @param response\r
+ * @return a set on a list of {@link Taxon} entities which are initialized\r
+ * using the following initialization strategy:\r
+ * {@link #DEFAULT_INIT_STRATEGY}\r
+ * @throws IOException\r
+ */\r
+ @RequestMapping(value = "accepted", method = RequestMethod.GET)\r
+ public Set<TaxonBase> doGetAccepted(\r
+ @PathVariable("uuid") UUID uuid,\r
+ HttpServletRequest request,\r
+ HttpServletResponse response) throws IOException {\r
+ logger.info("getAccepted() " + request.getServletPath());\r
+ TaxonBase tb = service.load(uuid);\r
+ HashSet<TaxonBase> resultset = new HashSet<TaxonBase>();\r
+ if(tb instanceof Taxon){\r
+ //the taxon already is accepted\r
+ //FIXME take the current view into account once views are implemented!!!\r
+ resultset.add((Taxon)tb);\r
+ } else {\r
+ Synonym syn = (Synonym)tb;\r
+ resultset.addAll(syn.getAcceptedTaxa());\r
+ //TODO init Synonyms\r
+ }\r
+ return resultset;\r
+ }\r
+\r
+ @RequestMapping(value = "taxonNodes", method = RequestMethod.GET)\r
+ public Set<TaxonNode> doGetTaxonNodes(\r
+ @PathVariable("uuid") UUID uuid,\r
+ HttpServletRequest request,\r
+ HttpServletResponse response) throws IOException {\r
+ TaxonBase tb = service.load(uuid, TAXONNODE_INIT_STRATEGY);\r
+ if(tb instanceof Taxon){\r
+ return ((Taxon)tb).getTaxonNodes();\r
+ } else {\r
+ HttpStatusMessage.UUID_REFERENCES_WRONG_TYPE.send(response);\r
+ return null;\r
+ }\r
+ }\r
+\r
+ @RequestMapping(value = "specimensOrObersvations", method = RequestMethod.GET)\r
+ public ModelAndView doListSpecimensOrObersvations(\r
+ @PathVariable("uuid") UUID uuid,\r
+ HttpServletRequest request,\r
+ HttpServletResponse response) throws IOException {\r
+ logger.info("doListSpecimensOrObersvations() - " + request.getServletPath());\r
+\r
+ ModelAndView mv = new ModelAndView();\r
+\r
+ TaxonBase tb = service.load(uuid);\r
+\r
+ List<OrderHint> orderHints = new ArrayList<OrderHint>();\r
+ orderHints.add(new OrderHint("titleCache", SortOrder.DESCENDING));\r
+\r
+ if(tb instanceof Taxon){\r
+ List<SpecimenOrObservationBase> specimensOrObersvations = occurrenceService.listByAnyAssociation(\r
+ null, (Taxon)tb, null, 0, orderHints, null);\r
+ mv.addObject(specimensOrObersvations);\r
+ } else {\r
+ HttpStatusMessage.UUID_REFERENCES_WRONG_TYPE.send(response);\r
+ return null;\r
+ }\r
+\r
+ return mv;\r
+ }\r
+\r
+ @RequestMapping(value = "taggedName", method = RequestMethod.GET)\r
+ public ModelAndView doGetTaggedName(\r
+ @PathVariable("uuid") UUID uuid,\r
+ HttpServletRequest request,\r
+ HttpServletResponse response) throws IOException {\r
+ logger.info("doGetDescriptionElementsByType() - " + request.getServletPath());\r
+\r
+ ModelAndView mv = new ModelAndView();\r
+\r
+ TaxonBase tb = service.load(uuid, Arrays.asList(new String[] {"name"}));\r
+ mv.addObject(nameService.getTaggedName(tb.getName().getUuid()));\r
+ return mv;\r
+ }\r
+\r
}
\ No newline at end of file
// $Id$\r
/**\r
* Copyright (C) 2007 EDIT\r
-* European Distributed Institute of Taxonomy \r
+* European Distributed Institute of Taxonomy\r
* http://www.e-taxonomy.eu\r
-* \r
+*\r
* The contents of this file are subject to the Mozilla Public License Version 1.1\r
* See LICENSE.TXT at the top of this package for the full license terms.\r
*/\r
@Service\r
@Transactional(propagation = Propagation.SUPPORTS, readOnly = true)\r
public class NameServiceImpl extends IdentifiableServiceBase<TaxonNameBase,ITaxonNameDao> implements INameService {\r
- static private final Logger logger = Logger.getLogger(NameServiceImpl.class);\r
- \r
- @Autowired\r
- protected ITermVocabularyDao vocabularyDao;\r
- @Autowired\r
- protected IOrderedTermVocabularyDao orderedVocabularyDao;\r
- @Autowired\r
- @Qualifier("refEntDao")\r
+ static private final Logger logger = Logger.getLogger(NameServiceImpl.class);\r
+\r
+ @Autowired\r
+ protected ITermVocabularyDao vocabularyDao;\r
+ @Autowired\r
+ protected IOrderedTermVocabularyDao orderedVocabularyDao;\r
+ @Autowired\r
+ @Qualifier("refEntDao")\r
protected IReferencedEntityDao<ReferencedEntityBase> referencedEntityDao;\r
- @Autowired\r
- private INomenclaturalStatusDao nomStatusDao;\r
- @Autowired\r
- private ITypeDesignationDao typeDesignationDao;\r
- @Autowired\r
- private IHomotypicalGroupDao homotypicalGroupDao;\r
-\r
- /**\r
- * Constructor\r
- */\r
- public NameServiceImpl(){\r
- if (logger.isDebugEnabled()) { logger.debug("Load NameService Bean"); }\r
- }\r
-\r
-//********************* METHODS ****************************************************************// \r
- \r
- public List getNamesByName(String name){\r
- return super.findCdmObjectsByTitle(name);\r
- }\r
- \r
- public List<NonViralName> getNamesByNameCache(String nameCache){\r
- List result = dao.findByName(nameCache, MatchMode.EXACT, null, null, null, null);\r
- return result;\r
- }\r
- \r
- public List getNamesByName(String name, CdmBase sessionObject){\r
- return super.findCdmObjectsByTitle(name, sessionObject);\r
- }\r
-\r
- public List findNamesByTitle(String title){\r
- return super.findCdmObjectsByTitle(title);\r
- }\r
- \r
- public List findNamesByTitle(String title, CdmBase sessionObject){\r
- return super.findCdmObjectsByTitle(title, sessionObject);\r
- }\r
- \r
- @Transactional(readOnly = false)\r
- public Map<UUID, HomotypicalGroup> saveAllHomotypicalGroups(Collection<HomotypicalGroup> homotypicalGroups){\r
- return homotypicalGroupDao.saveAll(homotypicalGroups);\r
- }\r
- \r
- @Transactional(readOnly = false)\r
- public Map<UUID, TypeDesignationBase> saveTypeDesignationAll(Collection<TypeDesignationBase> typeDesignationCollection){\r
- return typeDesignationDao.saveAll(typeDesignationCollection);\r
- }\r
-\r
- @Transactional(readOnly = false)\r
- public Map<UUID, ReferencedEntityBase> saveReferencedEntitiesAll(Collection<ReferencedEntityBase> referencedEntityCollection){\r
- return referencedEntityDao.saveAll(referencedEntityCollection);\r
- }\r
-\r
- public List<TaxonNameBase> getAllNames(int limit, int start){\r
- return dao.list(limit, start);\r
- }\r
-\r
- public List<NomenclaturalStatus> getAllNomenclaturalStatus(int limit, int start){\r
- return nomStatusDao.list(limit, start);\r
- }\r
- \r
- public List<TypeDesignationBase> getAllTypeDesignations(int limit, int start){\r
- return typeDesignationDao.getAllTypeDesignations(limit, start);\r
- }\r
- /**\r
- * FIXME Candidate for harmonization\r
- * homotypicalGroupService.list\r
- */\r
- public List<HomotypicalGroup> getAllHomotypicalGroups(int limit, int start){\r
- return homotypicalGroupDao.list(limit, start);\r
- }\r
- \r
- /**\r
- * FIXME Candidate for harmonization\r
- * remove\r
- */\r
- @Deprecated\r
- public List<RelationshipBase> getAllRelationships(int limit, int start){\r
- return dao.getRelationships(limit, start);\r
- }\r
- \r
- /**\r
- * FIXME Candidate for harmonization\r
- * is this the same as termService.getVocabulary(VocabularyEnum.Rank) \r
- * (non-Javadoc)\r
- * @see eu.etaxonomy.cdm.api.service.INameService#getRankVocabulary()\r
- */\r
- public OrderedTermVocabulary<Rank> getRankVocabulary() {\r
- String uuidString = "ef0d1ce1-26e3-4e83-b47b-ca74eed40b1b";\r
- UUID uuid = UUID.fromString(uuidString);\r
- OrderedTermVocabulary<Rank> rankVocabulary = \r
- (OrderedTermVocabulary)orderedVocabularyDao.findByUuid(uuid);\r
- return rankVocabulary;\r
- }\r
-\r
- /**\r
- * FIXME Candidate for harmonization\r
- * is this the same as termService.getVocabulary(VocabularyEnum.NameRelationshipType) \r
- * (non-Javadoc)\r
- * @see eu.etaxonomy.cdm.api.service.INameService#getNameRelationshipTypeVocabulary()\r
- */\r
- public TermVocabulary<NameRelationshipType> getNameRelationshipTypeVocabulary() {\r
- String uuidString = "6878cb82-c1a4-4613-b012-7e73b413c8cd";\r
- UUID uuid = UUID.fromString(uuidString);\r
- TermVocabulary<NameRelationshipType> nameRelTypeVocabulary = \r
- (TermVocabulary)vocabularyDao.findByUuid(uuid);\r
- return nameRelTypeVocabulary;\r
- }\r
-\r
- /**\r
- * FIXME Candidate for harmonization\r
- * is this the same as termService.getVocabulary(VocabularyEnum.StatusType) \r
- * (non-Javadoc)\r
- * @see eu.etaxonomy.cdm.api.service.INameService#getStatusTypeVocabulary()\r
- */\r
- public TermVocabulary<NomenclaturalStatusType> getStatusTypeVocabulary() {\r
- String uuidString = "bb28cdca-2f8a-4f11-9c21-517e9ae87f1f";\r
- UUID uuid = UUID.fromString(uuidString);\r
- TermVocabulary<NomenclaturalStatusType> nomStatusTypeVocabulary = \r
- (TermVocabulary)vocabularyDao.findByUuid(uuid);\r
- return nomStatusTypeVocabulary;\r
- }\r
-\r
- /**\r
- * FIXME Candidate for harmonization\r
- * is this the same as termService.getVocabulary(VocabularyEnum.SpecimenTypeDesignationStatus) \r
- * (non-Javadoc)\r
- * @see eu.etaxonomy.cdm.api.service.INameService#getTypeDesignationStatusVocabulary()\r
- */\r
- public TermVocabulary<SpecimenTypeDesignationStatus> getSpecimenTypeDesignationStatusVocabulary() {\r
- String uuidString = "ab177bd7-d3c8-4e58-a388-226fff6ba3c2";\r
- UUID uuid = UUID.fromString(uuidString);\r
- TermVocabulary<SpecimenTypeDesignationStatus> typeDesigStatusVocabulary = \r
- (TermVocabulary)vocabularyDao.findByUuid(uuid);\r
- return typeDesigStatusVocabulary;\r
- }\r
- \r
- /**\r
- * FIXME Candidate for harmonization\r
- * is this the same as termService.getVocabulary(VocabularyEnum.SpecimenTypeDesignationStatus)\r
- * and also seems to duplicate the above method, differing only in the DAO used and the return type \r
- * (non-Javadoc)\r
- * @see eu.etaxonomy.cdm.api.service.INameService#getTypeDesignationStatusVocabulary()\r
- */\r
- public OrderedTermVocabulary<SpecimenTypeDesignationStatus> getSpecimenTypeDesignationVocabulary() {\r
- String uuidString = "ab177bd7-d3c8-4e58-a388-226fff6ba3c2";\r
- UUID uuid = UUID.fromString(uuidString);\r
- OrderedTermVocabulary<SpecimenTypeDesignationStatus> typeDesignationVocabulary = \r
- (OrderedTermVocabulary)orderedVocabularyDao.findByUuid(uuid);\r
- return typeDesignationVocabulary;\r
- }\r
-\r
-\r
- @Autowired\r
- protected void setDao(ITaxonNameDao dao) {\r
- this.dao = dao;\r
- }\r
-\r
- public Pager<HybridRelationship> getHybridNames(NonViralName name, HybridRelationshipType type, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {\r
+ @Autowired\r
+ private INomenclaturalStatusDao nomStatusDao;\r
+ @Autowired\r
+ private ITypeDesignationDao typeDesignationDao;\r
+ @Autowired\r
+ private IHomotypicalGroupDao homotypicalGroupDao;\r
+\r
+ /**\r
+ * Constructor\r
+ */\r
+ public NameServiceImpl(){\r
+ if (logger.isDebugEnabled()) { logger.debug("Load NameService Bean"); }\r
+ }\r
+\r
+//********************* METHODS ****************************************************************//\r
+\r
+ public List getNamesByName(String name){\r
+ return super.findCdmObjectsByTitle(name);\r
+ }\r
+\r
+ public List<NonViralName> getNamesByNameCache(String nameCache){\r
+ List result = dao.findByName(nameCache, MatchMode.EXACT, null, null, null, null);\r
+ return result;\r
+ }\r
+\r
+ public List getNamesByName(String name, CdmBase sessionObject){\r
+ return super.findCdmObjectsByTitle(name, sessionObject);\r
+ }\r
+\r
+ public List findNamesByTitle(String title){\r
+ return super.findCdmObjectsByTitle(title);\r
+ }\r
+\r
+ public List findNamesByTitle(String title, CdmBase sessionObject){\r
+ return super.findCdmObjectsByTitle(title, sessionObject);\r
+ }\r
+\r
+ @Transactional(readOnly = false)\r
+ public Map<UUID, HomotypicalGroup> saveAllHomotypicalGroups(Collection<HomotypicalGroup> homotypicalGroups){\r
+ return homotypicalGroupDao.saveAll(homotypicalGroups);\r
+ }\r
+\r
+ @Transactional(readOnly = false)\r
+ public Map<UUID, TypeDesignationBase> saveTypeDesignationAll(Collection<TypeDesignationBase> typeDesignationCollection){\r
+ return typeDesignationDao.saveAll(typeDesignationCollection);\r
+ }\r
+\r
+ @Transactional(readOnly = false)\r
+ public Map<UUID, ReferencedEntityBase> saveReferencedEntitiesAll(Collection<ReferencedEntityBase> referencedEntityCollection){\r
+ return referencedEntityDao.saveAll(referencedEntityCollection);\r
+ }\r
+\r
+ public List<TaxonNameBase> getAllNames(int limit, int start){\r
+ return dao.list(limit, start);\r
+ }\r
+\r
+ public List<NomenclaturalStatus> getAllNomenclaturalStatus(int limit, int start){\r
+ return nomStatusDao.list(limit, start);\r
+ }\r
+\r
+ public List<TypeDesignationBase> getAllTypeDesignations(int limit, int start){\r
+ return typeDesignationDao.getAllTypeDesignations(limit, start);\r
+ }\r
+ /**\r
+ * FIXME Candidate for harmonization\r
+ * homotypicalGroupService.list\r
+ */\r
+ public List<HomotypicalGroup> getAllHomotypicalGroups(int limit, int start){\r
+ return homotypicalGroupDao.list(limit, start);\r
+ }\r
+\r
+ /**\r
+ * FIXME Candidate for harmonization\r
+ * remove\r
+ */\r
+ @Deprecated\r
+ public List<RelationshipBase> getAllRelationships(int limit, int start){\r
+ return dao.getRelationships(limit, start);\r
+ }\r
+\r
+ /**\r
+ * FIXME Candidate for harmonization\r
+ * is this the same as termService.getVocabulary(VocabularyEnum.Rank)\r
+ * (non-Javadoc)\r
+ * @see eu.etaxonomy.cdm.api.service.INameService#getRankVocabulary()\r
+ */\r
+ public OrderedTermVocabulary<Rank> getRankVocabulary() {\r
+ String uuidString = "ef0d1ce1-26e3-4e83-b47b-ca74eed40b1b";\r
+ UUID uuid = UUID.fromString(uuidString);\r
+ OrderedTermVocabulary<Rank> rankVocabulary =\r
+ (OrderedTermVocabulary)orderedVocabularyDao.findByUuid(uuid);\r
+ return rankVocabulary;\r
+ }\r
+\r
+ /**\r
+ * FIXME Candidate for harmonization\r
+ * is this the same as termService.getVocabulary(VocabularyEnum.NameRelationshipType)\r
+ * (non-Javadoc)\r
+ * @see eu.etaxonomy.cdm.api.service.INameService#getNameRelationshipTypeVocabulary()\r
+ */\r
+ public TermVocabulary<NameRelationshipType> getNameRelationshipTypeVocabulary() {\r
+ String uuidString = "6878cb82-c1a4-4613-b012-7e73b413c8cd";\r
+ UUID uuid = UUID.fromString(uuidString);\r
+ TermVocabulary<NameRelationshipType> nameRelTypeVocabulary =\r
+ (TermVocabulary)vocabularyDao.findByUuid(uuid);\r
+ return nameRelTypeVocabulary;\r
+ }\r
+\r
+ /**\r
+ * FIXME Candidate for harmonization\r
+ * is this the same as termService.getVocabulary(VocabularyEnum.StatusType)\r
+ * (non-Javadoc)\r
+ * @see eu.etaxonomy.cdm.api.service.INameService#getStatusTypeVocabulary()\r
+ */\r
+ public TermVocabulary<NomenclaturalStatusType> getStatusTypeVocabulary() {\r
+ String uuidString = "bb28cdca-2f8a-4f11-9c21-517e9ae87f1f";\r
+ UUID uuid = UUID.fromString(uuidString);\r
+ TermVocabulary<NomenclaturalStatusType> nomStatusTypeVocabulary =\r
+ (TermVocabulary)vocabularyDao.findByUuid(uuid);\r
+ return nomStatusTypeVocabulary;\r
+ }\r
+\r
+ /**\r
+ * FIXME Candidate for harmonization\r
+ * is this the same as termService.getVocabulary(VocabularyEnum.SpecimenTypeDesignationStatus)\r
+ * (non-Javadoc)\r
+ * @see eu.etaxonomy.cdm.api.service.INameService#getTypeDesignationStatusVocabulary()\r
+ */\r
+ public TermVocabulary<SpecimenTypeDesignationStatus> getSpecimenTypeDesignationStatusVocabulary() {\r
+ String uuidString = "ab177bd7-d3c8-4e58-a388-226fff6ba3c2";\r
+ UUID uuid = UUID.fromString(uuidString);\r
+ TermVocabulary<SpecimenTypeDesignationStatus> typeDesigStatusVocabulary =\r
+ (TermVocabulary)vocabularyDao.findByUuid(uuid);\r
+ return typeDesigStatusVocabulary;\r
+ }\r
+\r
+ /**\r
+ * FIXME Candidate for harmonization\r
+ * is this the same as termService.getVocabulary(VocabularyEnum.SpecimenTypeDesignationStatus)\r
+ * and also seems to duplicate the above method, differing only in the DAO used and the return type\r
+ * (non-Javadoc)\r
+ * @see eu.etaxonomy.cdm.api.service.INameService#getTypeDesignationStatusVocabulary()\r
+ */\r
+ public OrderedTermVocabulary<SpecimenTypeDesignationStatus> getSpecimenTypeDesignationVocabulary() {\r
+ String uuidString = "ab177bd7-d3c8-4e58-a388-226fff6ba3c2";\r
+ UUID uuid = UUID.fromString(uuidString);\r
+ OrderedTermVocabulary<SpecimenTypeDesignationStatus> typeDesignationVocabulary =\r
+ (OrderedTermVocabulary)orderedVocabularyDao.findByUuid(uuid);\r
+ return typeDesignationVocabulary;\r
+ }\r
+\r
+\r
+ @Autowired\r
+ protected void setDao(ITaxonNameDao dao) {\r
+ this.dao = dao;\r
+ }\r
+\r
+ public Pager<HybridRelationship> getHybridNames(NonViralName name, HybridRelationshipType type, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {\r
Integer numberOfResults = dao.countHybridNames(name, type);\r
- \r
- List<HybridRelationship> results = new ArrayList<HybridRelationship>();\r
- if(AbstractPagerImpl.hasResultsInRange(numberOfResults, pageNumber, pageSize)) { // no point checking again\r
- results = dao.getHybridNames(name, type, pageSize, pageNumber,orderHints,propertyPaths); \r
- }\r
- \r
- return new DefaultPagerImpl<HybridRelationship>(pageNumber, numberOfResults, pageSize, results);\r
- }\r
- \r
- /* (non-Javadoc)\r
- * @see eu.etaxonomy.cdm.api.service.INameService#listNameRelationships(eu.etaxonomy.cdm.model.name.TaxonNameBase, eu.etaxonomy.cdm.model.common.RelationshipBase.Direction, eu.etaxonomy.cdm.model.name.NameRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)\r
- */\r
- @Override\r
- public List<NameRelationship> listNameRelationships(TaxonNameBase name, Direction direction, NameRelationshipType type, Integer pageSize,\r
- Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {\r
- \r
- Integer numberOfResults = dao.countNameRelationships(name, NameRelationship.Direction.relatedFrom, type);\r
-\r
- List<NameRelationship> results = new ArrayList<NameRelationship>();\r
- if (AbstractPagerImpl.hasResultsInRange(numberOfResults, pageNumber, pageSize)) { // no point checking again\r
- results = dao.getNameRelationships(name, direction, type, pageSize, pageNumber, orderHints, propertyPaths);\r
- }\r
- return results;\r
- }\r
-\r
- /* (non-Javadoc)\r
- * @see eu.etaxonomy.cdm.api.service.INameService#pageNameRelationships(eu.etaxonomy.cdm.model.name.TaxonNameBase, eu.etaxonomy.cdm.model.common.RelationshipBase.Direction, eu.etaxonomy.cdm.model.name.NameRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)\r
- */\r
- @Override\r
- public Pager<NameRelationship> pageNameRelationships(TaxonNameBase name, Direction direction, NameRelationshipType type, Integer pageSize,\r
- Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {\r
- List<NameRelationship> results = listNameRelationships(name, direction, type, pageSize, pageNumber, orderHints, propertyPaths);\r
- return new DefaultPagerImpl<NameRelationship>(pageNumber, results.size(), pageSize, results);\r
- }\r
-\r
- public List<NameRelationship> listFromNameRelationships(TaxonNameBase name, NameRelationshipType type, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {\r
- return listNameRelationships(name, Direction.relatedFrom, type, pageSize, pageNumber, orderHints, propertyPaths);\r
- }\r
-\r
- public Pager<NameRelationship> pageFromNameRelationships(TaxonNameBase name, NameRelationshipType type, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {\r
- List<NameRelationship> results = listNameRelationships(name, Direction.relatedFrom, type, pageSize, pageNumber, orderHints, propertyPaths);\r
- return new DefaultPagerImpl<NameRelationship>(pageNumber, results.size(), pageSize, results);\r
- }\r
- \r
- public List<NameRelationship> listToNameRelationships(TaxonNameBase name, NameRelationshipType type, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {\r
- return listNameRelationships(name, Direction.relatedTo, type, pageSize, pageNumber, orderHints, propertyPaths);\r
- }\r
- \r
- public Pager<NameRelationship> pageToNameRelationships(TaxonNameBase name, NameRelationshipType type, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {\r
- List<NameRelationship> results = listNameRelationships(name, Direction.relatedTo, type, pageSize, pageNumber, orderHints, propertyPaths);\r
- return new DefaultPagerImpl<NameRelationship>(pageNumber, results.size(), pageSize, results);\r
- }\r
- \r
- public Pager<TypeDesignationBase> getTypeDesignations(TaxonNameBase name, SpecimenTypeDesignationStatus status, \r
- Integer pageSize, Integer pageNumber) { \r
- return getTypeDesignations(name, status, pageSize, pageNumber, null);\r
- }\r
- \r
- public Pager<TypeDesignationBase> getTypeDesignations(TaxonNameBase name, SpecimenTypeDesignationStatus status, \r
- Integer pageSize, Integer pageNumber, List<String> propertyPaths){\r
+\r
+ List<HybridRelationship> results = new ArrayList<HybridRelationship>();\r
+ if(AbstractPagerImpl.hasResultsInRange(numberOfResults, pageNumber, pageSize)) { // no point checking again\r
+ results = dao.getHybridNames(name, type, pageSize, pageNumber,orderHints,propertyPaths);\r
+ }\r
+\r
+ return new DefaultPagerImpl<HybridRelationship>(pageNumber, numberOfResults, pageSize, results);\r
+ }\r
+\r
+ /* (non-Javadoc)\r
+ * @see eu.etaxonomy.cdm.api.service.INameService#listNameRelationships(eu.etaxonomy.cdm.model.name.TaxonNameBase, eu.etaxonomy.cdm.model.common.RelationshipBase.Direction, eu.etaxonomy.cdm.model.name.NameRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)\r
+ */\r
+ @Override\r
+ public List<NameRelationship> listNameRelationships(TaxonNameBase name, Direction direction, NameRelationshipType type, Integer pageSize,\r
+ Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {\r
+\r
+ Integer numberOfResults = dao.countNameRelationships(name, NameRelationship.Direction.relatedFrom, type);\r
+\r
+ List<NameRelationship> results = new ArrayList<NameRelationship>();\r
+ if (AbstractPagerImpl.hasResultsInRange(numberOfResults, pageNumber, pageSize)) { // no point checking again\r
+ results = dao.getNameRelationships(name, direction, type, pageSize, pageNumber, orderHints, propertyPaths);\r
+ }\r
+ return results;\r
+ }\r
+\r
+ /* (non-Javadoc)\r
+ * @see eu.etaxonomy.cdm.api.service.INameService#pageNameRelationships(eu.etaxonomy.cdm.model.name.TaxonNameBase, eu.etaxonomy.cdm.model.common.RelationshipBase.Direction, eu.etaxonomy.cdm.model.name.NameRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)\r
+ */\r
+ @Override\r
+ public Pager<NameRelationship> pageNameRelationships(TaxonNameBase name, Direction direction, NameRelationshipType type, Integer pageSize,\r
+ Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {\r
+ List<NameRelationship> results = listNameRelationships(name, direction, type, pageSize, pageNumber, orderHints, propertyPaths);\r
+ return new DefaultPagerImpl<NameRelationship>(pageNumber, results.size(), pageSize, results);\r
+ }\r
+\r
+ public List<NameRelationship> listFromNameRelationships(TaxonNameBase name, NameRelationshipType type, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {\r
+ return listNameRelationships(name, Direction.relatedFrom, type, pageSize, pageNumber, orderHints, propertyPaths);\r
+ }\r
+\r
+ public Pager<NameRelationship> pageFromNameRelationships(TaxonNameBase name, NameRelationshipType type, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {\r
+ List<NameRelationship> results = listNameRelationships(name, Direction.relatedFrom, type, pageSize, pageNumber, orderHints, propertyPaths);\r
+ return new DefaultPagerImpl<NameRelationship>(pageNumber, results.size(), pageSize, results);\r
+ }\r
+\r
+ public List<NameRelationship> listToNameRelationships(TaxonNameBase name, NameRelationshipType type, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {\r
+ return listNameRelationships(name, Direction.relatedTo, type, pageSize, pageNumber, orderHints, propertyPaths);\r
+ }\r
+\r
+ public Pager<NameRelationship> pageToNameRelationships(TaxonNameBase name, NameRelationshipType type, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {\r
+ List<NameRelationship> results = listNameRelationships(name, Direction.relatedTo, type, pageSize, pageNumber, orderHints, propertyPaths);\r
+ return new DefaultPagerImpl<NameRelationship>(pageNumber, results.size(), pageSize, results);\r
+ }\r
+\r
+ public Pager<TypeDesignationBase> getTypeDesignations(TaxonNameBase name, SpecimenTypeDesignationStatus status,\r
+ Integer pageSize, Integer pageNumber) {\r
+ return getTypeDesignations(name, status, pageSize, pageNumber, null);\r
+ }\r
+\r
+ public Pager<TypeDesignationBase> getTypeDesignations(TaxonNameBase name, SpecimenTypeDesignationStatus status,\r
+ Integer pageSize, Integer pageNumber, List<String> propertyPaths){\r
Integer numberOfResults = dao.countTypeDesignations(name, status);\r
- \r
- List<TypeDesignationBase> results = new ArrayList<TypeDesignationBase>();\r
- if(numberOfResults > 0) { // no point checking again //TODO use AbstractPagerImpl.hasResultsInRange(numberOfResults, pageNumber, pageSize)\r
- results = dao.getTypeDesignations(name, status, pageSize, pageNumber, propertyPaths); \r
- }\r
- \r
- return new DefaultPagerImpl<TypeDesignationBase>(pageNumber, numberOfResults, pageSize, results);\r
- }\r
- \r
+\r
+ List<TypeDesignationBase> results = new ArrayList<TypeDesignationBase>();\r
+ if(numberOfResults > 0) { // no point checking again //TODO use AbstractPagerImpl.hasResultsInRange(numberOfResults, pageNumber, pageSize)\r
+ results = dao.getTypeDesignations(name, status, pageSize, pageNumber, propertyPaths);\r
+ }\r
+\r
+ return new DefaultPagerImpl<TypeDesignationBase>(pageNumber, numberOfResults, pageSize, results);\r
+ }\r
+\r
/**\r
* FIXME Candidate for harmonization\r
- * rename search\r
+ * rename search\r
*/\r
- public Pager<TaxonNameBase> searchNames(String uninomial,String infraGenericEpithet, String specificEpithet, String infraspecificEpithet, Rank rank, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints,\r
- List<String> propertyPaths) {\r
+ public Pager<TaxonNameBase> searchNames(String uninomial,String infraGenericEpithet, String specificEpithet, String infraspecificEpithet, Rank rank, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints,\r
+ List<String> propertyPaths) {\r
Integer numberOfResults = dao.countNames(uninomial, infraGenericEpithet, specificEpithet, infraspecificEpithet, rank);\r
- \r
- List<TaxonNameBase> results = new ArrayList<TaxonNameBase>();\r
- if(numberOfResults > 0) { // no point checking again //TODO use AbstractPagerImpl.hasResultsInRange(numberOfResults, pageNumber, pageSize)\r
- results = dao.searchNames(uninomial, infraGenericEpithet, specificEpithet, infraspecificEpithet, rank, pageSize, pageNumber, orderHints, propertyPaths); \r
- }\r
- \r
- return new DefaultPagerImpl<TaxonNameBase>(pageNumber, numberOfResults, pageSize, results);\r
- }\r
-\r
- /* (non-Javadoc)\r
- * @see eu.etaxonomy.cdm.api.service.INameService#getUuidAndTitleCacheOfNames()\r
- */\r
- public List<UuidAndTitleCache> getUuidAndTitleCacheOfNames() {\r
- return dao.getUuidAndTitleCacheOfNames();\r
- }\r
-\r
- public Pager<TaxonNameBase> findByName(Class<? extends TaxonNameBase> clazz, String queryString, MatchMode matchmode, List<Criterion> criteria, Integer pageSize,Integer pageNumber, List<OrderHint> orderHints,List<String> propertyPaths) {\r
- Integer numberOfResults = dao.countByName(clazz, queryString, matchmode, criteria);\r
- \r
- List<TaxonNameBase> results = new ArrayList<TaxonNameBase>();\r
- if(numberOfResults > 0) { // no point checking again //TODO use AbstractPagerImpl.hasResultsInRange(numberOfResults, pageNumber, pageSize)\r
- results = dao.findByName(clazz, queryString, matchmode, criteria, pageSize, pageNumber, orderHints, propertyPaths); \r
- }\r
- \r
- return new DefaultPagerImpl<TaxonNameBase>(pageNumber, numberOfResults, pageSize, results);\r
- }\r
-\r
- public HomotypicalGroup findHomotypicalGroup(UUID uuid) {\r
- return homotypicalGroupDao.findByUuid(uuid);\r
- }\r
-\r
-\r
- /* (non-Javadoc)\r
- * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#updateTitleCache(java.lang.Integer, eu.etaxonomy.cdm.strategy.cache.common.IIdentifiableEntityCacheStrategy)\r
- */\r
- @Override\r
- public void updateTitleCache(Class<? extends TaxonNameBase> clazz, Integer stepSize, IIdentifiableEntityCacheStrategy<TaxonNameBase> cacheStrategy, IProgressMonitor monitor) {\r
- if (clazz == null){\r
- clazz = TaxonNameBase.class;\r
- }\r
- super.updateTitleCacheImpl(clazz, stepSize, cacheStrategy, monitor);\r
- }\r
-\r
- \r
- @Override\r
- protected void setOtherCachesNull(TaxonNameBase name) {\r
- if (name.isInstanceOf(NonViralName.class)){\r
- NonViralName nvn = CdmBase.deproxy(name, NonViralName.class);\r
- if (! nvn.isProtectedNameCache()){\r
- nvn.setNameCache(null, false);\r
- }\r
- if (! nvn.isProtectedAuthorshipCache()){\r
- nvn.setAuthorshipCache(null, false);\r
- }\r
- if (! nvn.isProtectedFullTitleCache()){\r
- nvn.setFullTitleCache(null, false);\r
- }\r
- }\r
- }\r
-\r
- /* (non-Javadoc)\r
- * @see eu.etaxonomy.cdm.api.service.INameService#getTaggedName(eu.etaxonomy.cdm.model.name.TaxonNameBase)\r
- */\r
- @Override\r
- public List<TaggedText> getTaggedName(UUID uuid) {\r
- TaxonNameBase taxonNameBase = dao.load(uuid);\r
- return TaggedTextGenerator.getTaggedName(taxonNameBase);\r
- }\r
- \r
- \r
+\r
+ List<TaxonNameBase> results = new ArrayList<TaxonNameBase>();\r
+ if(numberOfResults > 0) { // no point checking again //TODO use AbstractPagerImpl.hasResultsInRange(numberOfResults, pageNumber, pageSize)\r
+ results = dao.searchNames(uninomial, infraGenericEpithet, specificEpithet, infraspecificEpithet, rank, pageSize, pageNumber, orderHints, propertyPaths);\r
+ }\r
+\r
+ return new DefaultPagerImpl<TaxonNameBase>(pageNumber, numberOfResults, pageSize, results);\r
+ }\r
+\r
+ /* (non-Javadoc)\r
+ * @see eu.etaxonomy.cdm.api.service.INameService#getUuidAndTitleCacheOfNames()\r
+ */\r
+ public List<UuidAndTitleCache> getUuidAndTitleCacheOfNames() {\r
+ return dao.getUuidAndTitleCacheOfNames();\r
+ }\r
+\r
+ public Pager<TaxonNameBase> findByName(Class<? extends TaxonNameBase> clazz, String queryString, MatchMode matchmode, List<Criterion> criteria, Integer pageSize,Integer pageNumber, List<OrderHint> orderHints,List<String> propertyPaths) {\r
+ Integer numberOfResults = dao.countByName(clazz, queryString, matchmode, criteria);\r
+\r
+ List<TaxonNameBase> results = new ArrayList<TaxonNameBase>();\r
+ if(numberOfResults > 0) { // no point checking again //TODO use AbstractPagerImpl.hasResultsInRange(numberOfResults, pageNumber, pageSize)\r
+ results = dao.findByName(clazz, queryString, matchmode, criteria, pageSize, pageNumber, orderHints, propertyPaths);\r
+ }\r
+\r
+ return new DefaultPagerImpl<TaxonNameBase>(pageNumber, numberOfResults, pageSize, results);\r
+ }\r
+\r
+ public HomotypicalGroup findHomotypicalGroup(UUID uuid) {\r
+ return homotypicalGroupDao.findByUuid(uuid);\r
+ }\r
+\r
+\r
+ /* (non-Javadoc)\r
+ * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#updateTitleCache(java.lang.Integer, eu.etaxonomy.cdm.strategy.cache.common.IIdentifiableEntityCacheStrategy)\r
+ */\r
+ @Override\r
+ public void updateTitleCache(Class<? extends TaxonNameBase> clazz, Integer stepSize, IIdentifiableEntityCacheStrategy<TaxonNameBase> cacheStrategy, IProgressMonitor monitor) {\r
+ if (clazz == null){\r
+ clazz = TaxonNameBase.class;\r
+ }\r
+ super.updateTitleCacheImpl(clazz, stepSize, cacheStrategy, monitor);\r
+ }\r
+\r
+\r
+ @Override\r
+ protected void setOtherCachesNull(TaxonNameBase name) {\r
+ if (name.isInstanceOf(NonViralName.class)){\r
+ NonViralName nvn = CdmBase.deproxy(name, NonViralName.class);\r
+ if (! nvn.isProtectedNameCache()){\r
+ nvn.setNameCache(null, false);\r
+ }\r
+ if (! nvn.isProtectedAuthorshipCache()){\r
+ nvn.setAuthorshipCache(null, false);\r
+ }\r
+ if (! nvn.isProtectedFullTitleCache()){\r
+ nvn.setFullTitleCache(null, false);\r
+ }\r
+ }\r
+ }\r
+\r
+ /* (non-Javadoc)\r
+ * @see eu.etaxonomy.cdm.api.service.INameService#getTaggedName(eu.etaxonomy.cdm.model.name.TaxonNameBase)\r
+ */\r
+ @Override\r
+ public List<TaggedText> getTaggedName(UUID uuid) {\r
+ TaxonNameBase taxonNameBase = dao.load(uuid);\r
+ List taggedName = taxonNameBase.getTaggedName();\r
+ return taggedName;\r
+// return TaggedTextGenerator.getTaggedName(taxonNameBase);\r
+ }\r
+\r
+\r
}\r