<parent>
<groupId>eu.etaxonomy</groupId>
<artifactId>cdmlib-parent</artifactId>
- <version>3.0.9-SNAPSHOT</version>
+ <version>3.0.10-SNAPSHOT</version>
- <relativePath>../pom.xml</relativePath>
+ <relativePath>../pom.xml</relativePath>
</parent>
-
+
<modelVersion>4.0.0</modelVersion>
<artifactId>cdmlib-io</artifactId>
<name>CDM Import/Export</name>
*/\r
\r
@Ignore // we ignore this test at the moment because it does not run with maven\r
+ //org.hibernate.PropertyAccessException: Null value was assigned to a property of primitive type setter of eu.etaxonomy.cdm.model.common.Language.protectedTitleCache\r
+ //...at eu.etaxonomy.cdm.persistence.dao.hibernate.common.DefinedTermDaoImpl.getLanguageByIso(DefinedTermDaoImpl.java:286) \r
public class SDDImportTest extends CdmTransactionalIntegrationTest {\r
- \r
- @SpringBeanByType\r
- SDDImport sddImport;\r
- \r
- @SpringBeanByType\r
- INameService nameService;\r
- \r
- private SDDImportConfigurator configurator;\r
- \r
- @Before\r
- public void setUp() throws URISyntaxException {\r
- URL url = this.getClass().getResource("/eu/etaxonomy/cdm/io/sdd/SDDImportTest-input.xml");\r
+\r
+ @SpringBeanByType\r
+ SDDImport sddImport;\r
+\r
+ @SpringBeanByType\r
+ INameService nameService;\r
+\r
+ private SDDImportConfigurator configurator;\r
+\r
+ @Before\r
+ public void setUp() throws URISyntaxException {\r
+ URL url = this.getClass().getResource("/eu/etaxonomy/cdm/io/sdd/SDDImportTest-input.xml");\r
+ URI uri = url.toURI();\r
+ // URI uri = URI.create("file:///C:/localCopy/Data/xper/Cichorieae-DA2.sdd.xml");\r
- Assert.assertNotNull(url);\r
+ Assert.assertNotNull(url);\r
- configurator = SDDImportConfigurator.NewInstance(url.toURI(), null);\r
+ configurator = SDDImportConfigurator.NewInstance(uri, null);\r
- }\r
- \r
- @Test\r
- public void testInit() {\r
- assertNotNull("sddImport should not be null", sddImport);\r
- assertNotNull("nameService should not be null", nameService);\r
- }\r
- \r
- @Test\r
- public void testDoInvoke() {\r
- sddImport.doInvoke(new SDDImportState(configurator));\r
- this.setComplete();\r
- this.endTransaction();\r
- assertEquals("Number of TaxonNames should be 1", 1, nameService.count(null));\r
- }\r
+ }\r
+\r
+ @Test\r
+ public void testInit() {\r
+ assertNotNull("sddImport should not be null", sddImport);\r
+ assertNotNull("nameService should not be null", nameService);\r
+ }\r
+\r
+ @Test\r
+ public void testDoInvoke() {\r
+ sddImport.doInvoke(new SDDImportState(configurator));\r
+ this.setComplete();\r
+ this.endTransaction();\r
+ assertEquals("Number of TaxonNames should be 1", 1, nameService.count(null));\r
+ }\r
\r
}\r
<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
- <groupId>eu.etaxonomy</groupId>
-
<artifactId>cdmlib-parent</artifactId>
+ <parent>
+ <groupId>eu.etaxonomy</groupId>
+ <artifactId>cdmlib-parent</artifactId>
- <version>3.0.9-SNAPSHOT</version>
+ <version>3.0.10-SNAPSHOT</version>
- <relativePath>../pom.xml</relativePath>
- </parent>
-
+ <relativePath>../pom.xml</relativePath>
+ </parent>
+
<modelVersion>4.0.0</modelVersion>
<artifactId>cdmlib-persistence</artifactId>
<name>CDM Persistence</name>
see also org.springframework.orm.hibernate3.AbstractSessionFactoryBean.setDataSource(DataSource dataSource)
-->
- <property name="dataSource" ref="dataSource"/>
- <property name="hibernateProperties" ref="hibernateProperties"/>
- </bean>
+
<property name="dataSource" ref="dataSource"/>
+
<property name="hibernateProperties" ref="hibernateProperties"/>
+ </bean>
- <!--
- Configuration for the BeanInitialization
- -->
- <bean id="titleCacheAutoInitializer" class="eu.etaxonomy.cdm.persistence.dao.TitleCacheAutoInitializer"></bean>
- <bean id="annotationTypeAutoInitializer" class="eu.etaxonomy.cdm.persistence.dao.AnnotationTypeAutoInitializer"></bean>
- <bean id="defaultBeanInitializer" class="eu.etaxonomy.cdm.persistence.dao.hibernate.HibernateBeanInitializer">
- <property name="beanAutoInitializers">
- <map>
- <entry key="eu.etaxonomy.cdm.model.common.IdentifiableEntity" value-ref="titleCacheAutoInitializer" />
- <entry key="eu.etaxonomy.cdm.model.common.Annotation" value-ref="annotationTypeAutoInitializer" />
- </map>
- </property>
- </bean>
+ <!--
+ Configuration for the BeanInitialization
+ -->
+ <bean id="titleCacheAutoInitializer" class="eu.etaxonomy.cdm.persistence.dao.TitleCacheAutoInitializer"></bean>
++ <bean id="annotationTypeAutoInitializer" class="eu.etaxonomy.cdm.persistence.dao.AnnotationTypeAutoInitializer"></bean>
+ <bean id="defaultBeanInitializer" class="eu.etaxonomy.cdm.persistence.dao.hibernate.HibernateBeanInitializer">
+ <property name="beanAutoInitializers">
+ <map>
+ <entry key="eu.etaxonomy.cdm.model.common.IdentifiableEntity" value-ref="titleCacheAutoInitializer" />
++ <entry key="eu.etaxonomy.cdm.model.common.Annotation" value-ref="annotationTypeAutoInitializer" />
+ </map>
+ </property>
+ </bean>
</beans>
int numberOfPartOf = dao.countPartOf(namedAreas);
assertEquals("countPartOf should return 2",2,numberOfPartOf);
}
-
+
@Test
++ // NOTE: if this test is failing see
++ // http://dev.e-taxonomy.eu/trac/changeset/13291/trunk/cdmlib/cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate/dataset.dtd
public void testListInitialization() {
AuditEventContextHolder.getContext().setAuditEvent(auditEvent);
List<OrderHint> orderHints = new ArrayList<OrderHint>();
this.taxonDao.save(taxon);
int n2 = this.descriptionDao.count();
Assert.assertEquals(1, n2-n1);
-
+
Sex scope = Sex.FEMALE();
description.addScope(scope);
-
+
this.descriptionDao.saveOrUpdate(description);
-
+
}
-
+
+ @Test
+ public void testListTaxonDescriptionWithMarker(){
+ Taxon taxon = (Taxon)this.taxonDao.findByUuid(UUID.fromString("b04cc9cb-2b4a-4cc4-a94a-3c93a2158b06"));
+ Set<Scope> scopes = null;
+ Set<NamedArea> geographicalScope = null;
+ Integer pageSize = null;
+ Integer pageNumber = null;
+ List<String> propertyPaths = null;
+
+ //complete
+ MarkerType completeMarkerType = (MarkerType)this.definedTermDao.findByUuid(UUID.fromString("b4b1b2ab-89a8-4ce6-8110-d60b8b1bc433")); //Marker "complete"
+ Assert.assertNotNull("MarkerType for 'complete' should exist", completeMarkerType);
+ Set<MarkerType> markerTypes = new HashSet<MarkerType>();
+ markerTypes.add(completeMarkerType);
+ int n1 = this.descriptionDao.countTaxonDescriptions(taxon, scopes, geographicalScope, markerTypes);
+ Assert.assertEquals("There should be 1 description marked 'complete'", 1, n1);
+ List<TaxonDescription> descriptions = this.descriptionDao.getTaxonDescriptions(taxon, scopes, geographicalScope, markerTypes, pageSize, pageNumber, propertyPaths);
+ Assert.assertEquals("There should be 1 description marked 'complete'", 1, descriptions.size());
+
+ //doubtful
+ MarkerType isDoubtfulMarkerType = (MarkerType)this.definedTermDao.findByUuid(UUID.fromString("b51325c8-05fe-421a-832b-d86fc249ef6e")); //Marker "doubtful"
+ Assert.assertNotNull("MarkerType for 'doubtful' should exist", isDoubtfulMarkerType);
+ markerTypes = new HashSet<MarkerType>(); //reset
+ markerTypes.add(isDoubtfulMarkerType);
+ int n2 = this.descriptionDao.countTaxonDescriptions(taxon, scopes, geographicalScope, markerTypes);
+ Assert.assertEquals("There should be no description marked 'doubtful'", 0, n2);
+ descriptions = this.descriptionDao.getTaxonDescriptions(taxon, scopes, geographicalScope, markerTypes, pageSize, pageNumber, propertyPaths);
+ Assert.assertEquals("There should be 0 description marked 'doubtful'", 0, descriptions.size());
+
+ //imported = false
+ UUID uuidImported = UUID.fromString("96878790-4ceb-42a2-9738-a2242079b679");
+ MarkerType importedMarkerType = (MarkerType)this.definedTermDao.findByUuid(uuidImported);
+ Assert.assertNotNull("MarkerType for 'imported' should exist", completeMarkerType);
+ markerTypes = new HashSet<MarkerType>();
+ markerTypes.add(importedMarkerType);
+ int n3 = this.descriptionDao.countTaxonDescriptions(taxon, scopes, geographicalScope, markerTypes);
+ Assert.assertEquals("There should be no description marked 'imported' as true", 0, n3);
+ descriptions = this.descriptionDao.getTaxonDescriptions(taxon, scopes, geographicalScope, markerTypes, pageSize, pageNumber, propertyPaths);
+ Assert.assertEquals("There should be no description marked 'imported' as true", 0, descriptions.size());
+ markerTypes = null;
+ descriptions = this.descriptionDao.getTaxonDescriptions(taxon, scopes, geographicalScope, markerTypes, pageSize, pageNumber, propertyPaths);
+ Assert.assertEquals("There should be 1 description", 1, descriptions.size());
+ TaxonDescription desc = descriptions.iterator().next();
+ boolean hasMarkerImportedAsFalse = desc.hasMarker(importedMarkerType, false);
+ Assert.assertTrue("The only description should have a negative marker on 'imported'", hasMarkerImportedAsFalse);
+
+ }
+
-
+
}
*/\r
public class TaxonDaoHibernateImplTest extends CdmTransactionalIntegrationTest {\r
\r
- @SpringBeanByType\r
- private ITaxonDao taxonDao;\r
+ @SpringBeanByType\r
+ private ITaxonDao taxonDao;\r
\r
- @SpringBeanByType\r
- private IClassificationDao classificationDao;\r
+ @SpringBeanByType\r
+ private IClassificationDao classificationDao;\r
\r
- @SpringBeanByType\r
- private IReferenceDao referenceDao;\r
+ @SpringBeanByType\r
+ private IReferenceDao referenceDao;\r
\r
- @SpringBeanByType\r
- IDefinedTermDao definedTermDao;\r
+ @SpringBeanByType\r
+ IDefinedTermDao definedTermDao;\r
\r
- private UUID uuid;\r
- private UUID sphingidae;\r
- private UUID acherontia;\r
- private UUID mimas;\r
- private UUID rethera;\r
- private UUID retheraSecCdmtest;\r
- private UUID atroposAgassiz;\r
- private UUID atroposLeach;\r
- private UUID acherontiaLachesis;\r
- private AuditEvent previousAuditEvent;\r
- private AuditEvent mostRecentAuditEvent;\r
+ private UUID uuid;\r
+ private UUID sphingidae;\r
+ private UUID acherontia;\r
+ private UUID mimas;\r
+ private UUID rethera;\r
+ private UUID retheraSecCdmtest;\r
+ private UUID atroposAgassiz;\r
+ private UUID atroposLeach;\r
+ private UUID acherontiaLachesis;\r
+ private AuditEvent previousAuditEvent;\r
+ private AuditEvent mostRecentAuditEvent;\r
\r
- private UUID northernAmericaUuid;\r
- private UUID southernAmericaUuid;\r
- private UUID antarcticaUuid;\r
+ private UUID northernAmericaUuid;\r
+ private UUID southernAmericaUuid;\r
+ private UUID antarcticaUuid;\r
\r
- private UUID classificationUuid;\r
+ private UUID classificationUuid;\r
\r
+ private static final String[] TABLE_NAMES = new String[] {\r
+ "HOMOTYPICALGROUP", "HOMOTYPICALGROUP_AUD", "REFERENCE", "REFERENCE_AUD", "SYNONYMRELATIONSHIP", "SYNONYMRELATIONSHIP_AUD", "TAXONBASE", "TAXONBASE_AUD"\r
+ , "TAXONNAMEBASE", "TAXONNAMEBASE_AUD", "TAXONRELATIONSHIP", "TAXONRELATIONSHIP_AUD" };\r
\r
- @Before\r
- public void setUp() {\r
\r
- uuid = UUID.fromString("496b1325-be50-4b0a-9aa2-3ecd610215f2");\r
- sphingidae = UUID.fromString("54e767ee-894e-4540-a758-f906ecb4e2d9");\r
- acherontia = UUID.fromString("c5cc8674-4242-49a4-aada-72d63194f5fa");\r
- acherontiaLachesis = UUID.fromString("b04cc9cb-2b4a-4cc4-a94a-3c93a2158b06");\r
- atroposAgassiz = UUID.fromString("d75b2e3d-7394-4ada-b6a5-93175b8751c1");\r
- atroposLeach = UUID.fromString("3da4ab34-6c50-4586-801e-732615899b07");\r
- rethera = UUID.fromString("a9f42927-e507-4fda-9629-62073a908aae");\r
- retheraSecCdmtest = UUID.fromString("a9f42927-e507-4fda-9629-62073a908aae");\r
-\r
-\r
- mimas = UUID.fromString("900052b7-b69c-4e26-a8f0-01c215214c40");\r
- previousAuditEvent = new AuditEvent();\r
- previousAuditEvent.setRevisionNumber(1025);\r
- previousAuditEvent.setUuid(UUID.fromString("a680fab4-365e-4765-b49e-768f2ee30cda"));\r
- mostRecentAuditEvent = new AuditEvent();\r
- mostRecentAuditEvent.setRevisionNumber(1026);\r
- mostRecentAuditEvent.setUuid(UUID.fromString("afe8e761-8545-497b-9134-6a6791fc0b0d"));\r
- AuditEventContextHolder.clearContext(); // By default we're in the current view (i.e. view == null)\r
-\r
- northernAmericaUuid = UUID.fromString("2757e726-d897-4546-93bd-7951d203bf6f");\r
- southernAmericaUuid = UUID.fromString("6310b3ba-96f4-4855-bb5b-326e7af188ea");\r
- antarcticaUuid = UUID.fromString("791b3aa0-54dd-4bed-9b68-56b4680aad0c");\r
-\r
- classificationUuid = UUID.fromString("aeee7448-5298-4991-b724-8d5b75a0a7a9");\r
- }\r
+ @Before\r
+ public void setUp() {\r
\r
- @After\r
- public void tearDown() {\r
- AuditEventContextHolder.clearContext();\r
- }\r
+ uuid = UUID.fromString("496b1325-be50-4b0a-9aa2-3ecd610215f2");\r
+ sphingidae = UUID.fromString("54e767ee-894e-4540-a758-f906ecb4e2d9");\r
+ acherontia = UUID.fromString("c5cc8674-4242-49a4-aada-72d63194f5fa");\r
+ acherontiaLachesis = UUID.fromString("b04cc9cb-2b4a-4cc4-a94a-3c93a2158b06");\r
+ atroposAgassiz = UUID.fromString("d75b2e3d-7394-4ada-b6a5-93175b8751c1");\r
+ atroposLeach = UUID.fromString("3da4ab34-6c50-4586-801e-732615899b07");\r
+ rethera = UUID.fromString("a9f42927-e507-4fda-9629-62073a908aae");\r
- retheraSecCdmtest = UUID.fromString("a9f42927-e507-433a-9629-62073a908aae");\r
++ retheraSecCdmtest = UUID.fromString("a9f42927-e507-4fda-9629-62073a908aae");\r
\r
- /**\r
- * Test method for {@link eu.etaxonomy.cdm.persistence.dao.hibernate.taxon.TaxonDaoHibernateImpl#TaxonDaoHibernateImpl()}.\r
- */\r
- @Test\r
- @DataSet\r
- public void testInit() {\r
- logger.warn("testInit()");\r
- assertNotNull("Instance of ITaxonDao expected",taxonDao);\r
- assertNotNull("Instance of IReferenceDao expected",referenceDao);\r
- }\r
\r
- /**\r
- * Test method for\r
- * {@link eu.etaxonomy.cdm.persistence.dao.hibernate.taxon.TaxonDaoHibernateImpl#getRootTaxa(eu.etaxonomy.cdm.model.reference.Reference)}\r
- * .\r
- */\r
- @Test\r
- @DataSet\r
- public void testGetRootTaxa() {\r
- Reference sec1 = referenceDao.findById(1);\r
- assert sec1 != null : "sec1 must exist";\r
- Reference sec2 = referenceDao.findById(2);\r
- assert sec2 != null : "sec2 must exist";\r
-\r
- List<Taxon> rootTaxa = taxonDao.getRootTaxa(sec1);\r
- assertNotNull("getRootTaxa should return a List", rootTaxa);\r
- assertFalse("The list should not be empty", rootTaxa.isEmpty());\r
- assertEquals("There should be one root taxon", 1, rootTaxa.size());\r
-\r
- rootTaxa = taxonDao.getRootTaxa(sec1, CdmFetch.FETCH_CHILDTAXA(), true, false);\r
- assertNotNull("getRootTaxa should return a List", rootTaxa);\r
- assertFalse("The list should not be empty", rootTaxa.isEmpty());\r
- assertEquals("There should be one root taxon", 1, rootTaxa.size());\r
-\r
- rootTaxa = taxonDao.getRootTaxa(Rank.GENUS(), sec1, CdmFetch.FETCH_CHILDTAXA(), true, false, null);\r
- assertNotNull("getRootTaxa should return a List", rootTaxa);\r
- assertFalse("The list should not be empty", rootTaxa.isEmpty());\r
- assertEquals("There should be one root taxon", 1, rootTaxa.size());\r
-\r
- rootTaxa = taxonDao.getRootTaxa(Rank.FAMILY(), sec2, CdmFetch.FETCH_CHILDTAXA(), true, false, null);\r
- if (logger.isDebugEnabled()) {\r
- logger.debug("Root taxa rank Family (" + rootTaxa.size() + "):");\r
- for (Taxon taxon : rootTaxa) {\r
- logger.debug(taxon.getTitleCache());\r
- }\r
- }\r
- assertEquals("There should be one root taxon rank Family", 1, rootTaxa.size());\r
- rootTaxa = taxonDao.getRootTaxa(Rank.GENUS(), sec2, CdmFetch.FETCH_CHILDTAXA(), true, false, null);\r
- assertNotNull("getRootTaxa should return a List", rootTaxa);\r
- assertFalse("The list should not be empty", rootTaxa.isEmpty());\r
- if (logger.isDebugEnabled()) {\r
- logger.debug("Root taxa rank Genus (" + rootTaxa.size() + "):");\r
- for (Taxon taxon : rootTaxa) {\r
- logger.debug(taxon.getTitleCache());\r
- }\r
- }\r
- assertEquals("There should be 22 root taxa rank Genus", 22, rootTaxa.size());\r
-\r
- rootTaxa = taxonDao.getRootTaxa(Rank.SPECIES(), sec2, CdmFetch.FETCH_CHILDTAXA(), true, false, null);\r
- if (logger.isDebugEnabled()) {\r
- logger.debug("Root taxa rank Species (" + rootTaxa.size() + "):");\r
- for (Taxon taxon : rootTaxa) {\r
- logger.debug(taxon.getTitleCache());\r
- }\r
- }\r
- assertEquals("There should be 4 root taxa rank Species", 3, rootTaxa.size());\r
- }\r
+ mimas = UUID.fromString("900052b7-b69c-4e26-a8f0-01c215214c40");\r
+ previousAuditEvent = new AuditEvent();\r
+ previousAuditEvent.setRevisionNumber(1025);\r
+ previousAuditEvent.setUuid(UUID.fromString("a680fab4-365e-4765-b49e-768f2ee30cda"));\r
+ mostRecentAuditEvent = new AuditEvent();\r
+ mostRecentAuditEvent.setRevisionNumber(1026);\r
+ mostRecentAuditEvent.setUuid(UUID.fromString("afe8e761-8545-497b-9134-6a6791fc0b0d"));\r
+ AuditEventContextHolder.clearContext(); // By default we're in the current view (i.e. view == null)\r
+\r
+ northernAmericaUuid = UUID.fromString("2757e726-d897-4546-93bd-7951d203bf6f");\r
+ southernAmericaUuid = UUID.fromString("6310b3ba-96f4-4855-bb5b-326e7af188ea");\r
+ antarcticaUuid = UUID.fromString("791b3aa0-54dd-4bed-9b68-56b4680aad0c");\r
+\r
+ classificationUuid = UUID.fromString("aeee7448-5298-4991-b724-8d5b75a0a7a9");\r
+ }\r
+\r
+ @After\r
+ public void tearDown() {\r
+ AuditEventContextHolder.clearContext();\r
+ }\r
+\r
+ /**\r
+ * Test method for {@link eu.etaxonomy.cdm.persistence.dao.hibernate.taxon.TaxonDaoHibernateImpl#TaxonDaoHibernateImpl()}.\r
+ */\r
+ @Test\r
+ @DataSet\r
+ public void testInit() {\r
+ logger.warn("testInit()");\r
+ assertNotNull("Instance of ITaxonDao expected",taxonDao);\r
+ assertNotNull("Instance of IReferenceDao expected",referenceDao);\r
+ }\r
+\r
+ /**\r
+ * Test method for\r
+ * {@link eu.etaxonomy.cdm.persistence.dao.hibernate.taxon.TaxonDaoHibernateImpl#getRootTaxa(eu.etaxonomy.cdm.model.reference.Reference)}\r
+ * .\r
+ */\r
+ @Test\r
+ @DataSet\r
+ public void testGetRootTaxa() {\r
+ Reference sec1 = referenceDao.findById(1);\r
+ assert sec1 != null : "sec1 must exist";\r
+ Reference sec2 = referenceDao.findById(2);\r
+ assert sec2 != null : "sec2 must exist";\r
+\r
+ List<Taxon> rootTaxa = taxonDao.getRootTaxa(sec1);\r
+ assertNotNull("getRootTaxa should return a List", rootTaxa);\r
+ assertFalse("The list should not be empty", rootTaxa.isEmpty());\r
+ assertEquals("There should be one root taxon", 1, rootTaxa.size());\r
+\r
+ rootTaxa = taxonDao.getRootTaxa(sec1, CdmFetch.FETCH_CHILDTAXA(), true, false);\r
+ assertNotNull("getRootTaxa should return a List", rootTaxa);\r
+ assertFalse("The list should not be empty", rootTaxa.isEmpty());\r
+ assertEquals("There should be one root taxon", 1, rootTaxa.size());\r
+\r
+ rootTaxa = taxonDao.getRootTaxa(Rank.GENUS(), sec1, CdmFetch.FETCH_CHILDTAXA(), true, false, null);\r
+ assertNotNull("getRootTaxa should return a List", rootTaxa);\r
+ assertFalse("The list should not be empty", rootTaxa.isEmpty());\r
+ assertEquals("There should be one root taxon", 1, rootTaxa.size());\r
+\r
+ rootTaxa = taxonDao.getRootTaxa(Rank.FAMILY(), sec2, CdmFetch.FETCH_CHILDTAXA(), true, false, null);\r
+ if (logger.isDebugEnabled()) {\r
+ logger.debug("Root taxa rank Family (" + rootTaxa.size() + "):");\r
+ for (Taxon taxon : rootTaxa) {\r
+ logger.debug(taxon.getTitleCache());\r
+ }\r
+ }\r
+ assertEquals("There should be one root taxon rank Family", 1, rootTaxa.size());\r
+ rootTaxa = taxonDao.getRootTaxa(Rank.GENUS(), sec2, CdmFetch.FETCH_CHILDTAXA(), true, false, null);\r
+ assertNotNull("getRootTaxa should return a List", rootTaxa);\r
+ assertFalse("The list should not be empty", rootTaxa.isEmpty());\r
+ if (logger.isDebugEnabled()) {\r
+ logger.debug("Root taxa rank Genus (" + rootTaxa.size() + "):");\r
+ for (Taxon taxon : rootTaxa) {\r
+ logger.debug(taxon.getTitleCache());\r
+ }\r
+ }\r
+ assertEquals("There should be 22 root taxa rank Genus", 22, rootTaxa.size());\r
+\r
+ rootTaxa = taxonDao.getRootTaxa(Rank.SPECIES(), sec2, CdmFetch.FETCH_CHILDTAXA(), true, false, null);\r
+ if (logger.isDebugEnabled()) {\r
+ logger.debug("Root taxa rank Species (" + rootTaxa.size() + "):");\r
+ for (Taxon taxon : rootTaxa) {\r
+ logger.debug(taxon.getTitleCache());\r
+ }\r
+ }\r
+ assertEquals("There should be 4 root taxa rank Species", 3, rootTaxa.size());\r
+ }\r
+\r
+ /**\r
+ * Test method for {@link eu.etaxonomy.cdm.persistence.dao.hibernate.taxon.TaxonDaoHibernateImpl#getTaxaByName(java.lang.String, eu.etaxonomy.cdm.model.reference.Reference)}.\r
+ */\r
+ @Test\r
+ @DataSet\r
+ public void testGetTaxaByName() {\r
+ Reference sec = referenceDao.findById(1);\r
+ assert sec != null : "sec must exist";\r
+\r
+ List<TaxonBase> results = taxonDao.getTaxaByName("Aus", sec);\r
+ assertNotNull("getTaxaByName should return a List", results);\r
+ //assertFalse("The list should not be empty", results.isEmpty());\r
+ assertTrue(results.size() == 1);\r
+\r
+ results = taxonDao.getTaxaByName("A*", MatchMode.BEGINNING,\r
+ true, null, null);\r
+ assertNotNull("getTaxaByName should return a List", results);\r
- assertTrue(results.size() == 9);\r
+ \r
- /**\r
- * Test method for {@link eu.etaxonomy.cdm.persistence.dao.hibernate.taxon.TaxonDaoHibernateImpl#getTaxaByName(java.lang.String, eu.etaxonomy.cdm.model.reference.Reference)}.\r
- */\r
- @Test\r
- @DataSet\r
- public void testGetTaxaByName() {\r
- Reference sec = referenceDao.findById(1);\r
- assert sec != null : "sec must exist";\r
-\r
- List<TaxonBase> results = taxonDao.getTaxaByName("Aus", sec);\r
- assertNotNull("getTaxaByName should return a List", results);\r
- //assertFalse("The list should not be empty", results.isEmpty());\r
- assertTrue(results.size() == 1);\r
-\r
- results = taxonDao.getTaxaByName("A*", MatchMode.BEGINNING,\r
- true, null, null);\r
- assertNotNull("getTaxaByName should return a List", results);\r
- \r
+ assertTrue(results.size() == 12);\r
+ \r
+ \r
+ //System.err.println("Species group: " + Rank.SPECIESGROUP().getId() + "Species: " + Rank.SPECIES().getId() + "Section Botany: "+ Rank.SECTION_BOTANY());\r
\r
- if (logger.isDebugEnabled()) {\r
- for (int i = 0; i < results.size(); i++) {\r
- String nameCache = "";\r
- TaxonNameBase<?,?> taxonNameBase= ((TaxonBase)results.get(i)).getName();\r
- nameCache = ((NonViralName)taxonNameBase).getNameCache();\r
- logger.debug(results.get(i).getClass() + "(" + i +")" +\r
- ": Name Cache = " + nameCache + ", Title Cache = " + results.get(i).getTitleCache());\r
- }\r
- }\r
+ if (logger.isDebugEnabled()) {\r
+ for (int i = 0; i < results.size(); i++) {\r
+ String nameCache = "";\r
+ TaxonNameBase<?,?> taxonNameBase= ((TaxonBase)results.get(i)).getName();\r
+ nameCache = ((NonViralName)taxonNameBase).getNameCache();\r
+ logger.debug(results.get(i).getClass() + "(" + i +")" +\r
+ ": Name Cache = " + nameCache + ", Title Cache = " + results.get(i).getTitleCache());\r
+ }\r
+ }\r
// assertEquals(results.get(0).getTitleCache(), "Abies sec. ???");\r
// assertEquals(results.get(1).getTitleCache(), "Abies Mill.");\r
// assertEquals(results.get(2).getTitleCache(), "Abies mill. sec. ???");\r
// assertEquals(results.get(4).getTitleCache(), "Abies alba Michx. sec. ???");\r
// assertEquals(results.get(5).getTitleCache(), "Abies alba Mill. sec. ???");\r
\r
- results = taxonDao.getTaxaByName("A", MatchMode.BEGINNING, true, null, null);\r
- assertNotNull("getTaxaByName should return a List", results);\r
+ results = taxonDao.getTaxaByName("A", MatchMode.BEGINNING, true, null, null);\r
+ assertNotNull("getTaxaByName should return a List", results);\r
- assertTrue(results.size() == 9);\r
+ assertTrue(results.size() == 12);\r
\r
- results = taxonDao.getTaxaByName("Aus", MatchMode.EXACT, true, null, null);\r
- assertNotNull("getTaxaByName should return a List", results);\r
- assertEquals("Results list should contain one entity",1,results.size());\r
- }\r
+ results = taxonDao.getTaxaByName("Aus", MatchMode.EXACT, true, null, null);\r
+ assertNotNull("getTaxaByName should return a List", results);\r
+ assertEquals("Results list should contain one entity",1,results.size());\r
+ }\r
\r
- /**\r
- * Test method for {@link eu.etaxonomy.cdm.persistence.dao.hibernate.taxon.TaxonDaoHibernateImpl#getTaxaByName(java.lang.String, eu.etaxonomy.cdm.model.reference.Reference)}.\r
- */\r
- @Test\r
- @DataSet\r
- public void testGetTaxaByNameForEditor() {\r
- Reference sec = referenceDao.findById(1);\r
- assert sec != null : "sec must exist";\r
+ \r
+ @Test\r
+ //@Ignore\r
+ @DataSet ("TaxonDaoHibernateImplTest.testGetTaxaByNameAndArea.xml")\r
+ public void testGetTaxaByNameWithMisappliedNames(){\r
+ \r
+ Classification classification = classificationDao.load(classificationUuid);\r
+ \r
+ /* NOTE:\r
+ * The testdata contains 3 misapplied names (1. nameCache = Aus, 2. nameCache = Rethera, 3. nameCache = Daphnis), two contained in the classification used in this test,\r
+ * the other one is not contained in any classification. This latter case is the more general situation.\r
+ * Misapplied names should be found regardless of whether they are contained in a classification or not.\r
+ */\r
+ //two accepted taxa starting with R in classification "TestBaum"\r
+ List<TaxonBase> results = taxonDao.getTaxaByName(true, false, false, "R*", classification, MatchMode.BEGINNING, null, null, null, null);\r
+ Assert.assertEquals("There should be 2 Taxa", 2, results.size());\r
+ \r
+ //three taxa, 2 accepted and 1 misapplied name starting with R\r
+ results = taxonDao.getTaxaByName(true, false, true, "R*", null, MatchMode.BEGINNING, null, null, null, null);\r
+ Assert.assertEquals("There should be 3 Taxa", 3, results.size());\r
+ \r
+ //\r
+ results = taxonDao.getTaxaByName(true, true, true, "A*", null, MatchMode.BEGINNING, null, null, null, null);\r
+ Assert.assertEquals("There should be 12 Taxa",12, results.size());\r
+ \r
+ //two accepted taxa in classification and 1 misapplied name with accepted name in classification\r
+ results = taxonDao.getTaxaByName(true, true, true, "R*", classification, MatchMode.BEGINNING, null, null, null, null);\r
+ Assert.assertEquals("There should be 3 Taxa", 3, results.size());\r
+ \r
+ //same as above because all taxa, synonyms and misapplied names starting with R are in the classification\r
+ results = taxonDao.getTaxaByName(true, true, true, "R*", null, MatchMode.BEGINNING, null, null, null, null);\r
+ Assert.assertEquals("There should be 3 Taxa", 3, results.size());\r
+ \r
+ //find misapplied names with accepted taxon in the classification, the accepted taxa of two misapplied names are in the classification\r
+ results = taxonDao.getTaxaByName(false, false, true, "*", classification, MatchMode.BEGINNING, null, null, null, null);\r
+ Assert.assertEquals("There should be 2 Taxa", 2, results.size());\r
+ \r
+ //find misapplied names beginning with R\r
+ results = taxonDao.getTaxaByName(false, false, true, "R*", null, MatchMode.BEGINNING, null, null, null, null);\r
+ Assert.assertEquals("There should be 1 Taxa", 1, results.size());\r
+ \r
+ //find all three misapplied names \r
+ results = taxonDao.getTaxaByName(false, false, true, "*", null, MatchMode.BEGINNING, null, null, null, null);\r
+ Assert.assertEquals("There should be 3 Taxa", 3, results.size());\r
+ \r
+ }\r
+ \r
+ /**\r
+ * Test method for {@link eu.etaxonomy.cdm.persistence.dao.hibernate.taxon.TaxonDaoHibernateImpl#getTaxaByName(java.lang.String, eu.etaxonomy.cdm.model.reference.Reference)}.\r
+ */\r
+ @Test\r
+ @DataSet\r
+ public void testGetTaxaByNameForEditor() {\r
+ Reference sec = referenceDao.findById(1);\r
+ assert sec != null : "sec must exist";\r
\r
- List<UuidAndTitleCache<TaxonBase>> results = taxonDao.getTaxaByNameForEditor(TaxonBase.class, "Mand*", null, MatchMode.BEGINNING, null);\r
+ List<UuidAndTitleCache<TaxonBase>> results = taxonDao.getTaxaByNameForEditor(true, true, "Mand*", null, MatchMode.BEGINNING, null);\r
- assertNotNull("getTaxaByName should return a List", results);\r
- //assertFalse("The list should not be empty", results.isEmpty());\r
- assertTrue(results.size() == 5);\r
+ assertNotNull("getTaxaByName should return a List", results);\r
+ //assertFalse("The list should not be empty", results.isEmpty());\r
+ assertTrue(results.size() == 5);\r
\r
\r
- results = taxonDao.getTaxaByNameForEditor(TaxonBase.class,"A*",null, MatchMode.BEGINNING, null);\r
+ results = taxonDao.getTaxaByNameForEditor(true, true,"A*",null, MatchMode.BEGINNING, null);\r
- assertNotNull("getTaxaByName should return a List", results);\r
+ assertNotNull("getTaxaByName should return a List", results);\r
- assertTrue(results.size() == 12);\r
+ assertTrue(results.size() == 15);\r
\r
\r
- results = taxonDao.getTaxaByNameForEditor(Taxon.class,"A", null,MatchMode.BEGINNING, null);\r
+ results = taxonDao.getTaxaByNameForEditor(true, false,"A", null,MatchMode.BEGINNING, null);\r
- assertNotNull("getTaxaByName should return a List", results);\r
+ assertNotNull("getTaxaByName should return a List", results);\r
- assertTrue(results.size() == 9);\r
+ assertTrue(results.size() == 12);\r
- assertEquals(results.get(0).getType(), Taxon.class);\r
+ assertEquals(results.get(0).getType(), Taxon.class);\r
\r
- results = taxonDao.getTaxaByNameForEditor(Synonym.class,"A", null,MatchMode.BEGINNING, null);\r
+ results = taxonDao.getTaxaByNameForEditor(false, true,"A", null,MatchMode.BEGINNING, null);\r
- assertNotNull("getTaxaByName should return a List", results);\r
- assertTrue(results.size() == 3);\r
- assertEquals(results.get(0).getType(), Synonym.class);\r
+ assertNotNull("getTaxaByName should return a List", results);\r
+ assertTrue(results.size() == 3);\r
+ assertEquals(results.get(0).getType(), Synonym.class);\r
\r
- results = taxonDao.getTaxaByNameForEditor(TaxonBase.class,"Aus", null,MatchMode.EXACT, null);\r
+ results = taxonDao.getTaxaByNameForEditor(true, true,"Aus", null,MatchMode.EXACT, null);\r
- assertNotNull("getTaxaByName should return a List", results);\r
- assertEquals("Results list should contain one entity",1,results.size());\r
- }\r
-\r
-\r
- /**\r
- * Test method for {@link eu.etaxonomy.cdm.persistence.dao.hibernate.taxon.TaxonDaoHibernateImpl#getTaxaByName(java.lang.String, eu.etaxonomy.cdm.model.reference.Reference)}\r
- * restricting the search by a set of Areas.\r
- */\r
- @SuppressWarnings("unchecked")\r
- @Test\r
- @DataSet("TaxonDaoHibernateImplTest.testGetTaxaByNameAndArea.xml")\r
- public void testGetTaxaByNameAndArea() {\r
-\r
- Set<NamedArea> namedAreas = new HashSet<NamedArea>();\r
- namedAreas.add((NamedArea)definedTermDao.load(northernAmericaUuid));\r
- //namedAreas.add((NamedArea)definedTermDao.load(southernAmericaUuid));\r
- //namedAreas.add((NamedArea)definedTermDao.load(antarcticaUuid));\r
-\r
- Classification taxonmicTree = classificationDao.findByUuid(classificationUuid);\r
-\r
- // prepare some synonym relation ships for some tests\r
- Synonym synAtroposAgassiz = (Synonym)taxonDao.findByUuid(atroposAgassiz);\r
- Taxon taxonRethera = (Taxon)taxonDao.findByUuid(rethera);\r
- taxonRethera.addSynonym(synAtroposAgassiz, SynonymRelationshipType.SYNONYM_OF());\r
-\r
- logger.warn("addSynonym(..)");\r
+ assertNotNull("getTaxaByName should return a List", results);\r
+ assertEquals("Results list should contain one entity",1,results.size());\r
+ }\r
+\r
+\r
+ /**\r
+ * Test method for {@link eu.etaxonomy.cdm.persistence.dao.hibernate.taxon.TaxonDaoHibernateImpl#getTaxaByName(java.lang.String, eu.etaxonomy.cdm.model.reference.Reference)}\r
+ * restricting the search by a set of Areas.\r
+ */\r
+ @SuppressWarnings("unchecked")\r
+ @Test\r
+ @DataSet("TaxonDaoHibernateImplTest.testGetTaxaByNameAndArea.xml")\r
+ public void testGetTaxaByNameAndArea() {\r
+\r
+ Set<NamedArea> namedAreas = new HashSet<NamedArea>();\r
+ namedAreas.add((NamedArea)definedTermDao.load(northernAmericaUuid));\r
+ //namedAreas.add((NamedArea)definedTermDao.load(southernAmericaUuid));\r
+ //namedAreas.add((NamedArea)definedTermDao.load(antarcticaUuid));\r
+\r
+ Classification taxonmicTree = classificationDao.findByUuid(classificationUuid);\r
+\r
+ // prepare some synonym relation ships for some tests\r
+ Synonym synAtroposAgassiz = (Synonym)taxonDao.findByUuid(atroposAgassiz);\r
+ Taxon taxonRethera = (Taxon)taxonDao.findByUuid(rethera);\r
+ taxonRethera.addSynonym(synAtroposAgassiz, SynonymRelationshipType.SYNONYM_OF());\r
+ logger.warn("addSynonym(..)");\r
- this.taxonDao.clear();\r
+ //this.taxonDao.clear();\r
- Synonym synAtroposLeach = (Synonym)taxonDao.findByUuid(atroposLeach);\r
- Taxon taxonRetheraSecCdmtest = (Taxon)taxonDao.findByUuid(retheraSecCdmtest);\r
- taxonRetheraSecCdmtest.addSynonym(synAtroposLeach, SynonymRelationshipType.SYNONYM_OF());\r
+ Synonym synAtroposLeach = (Synonym)taxonDao.findByUuid(atroposLeach);\r
+ Taxon taxonRetheraSecCdmtest = (Taxon)taxonDao.findByUuid(retheraSecCdmtest);\r
+ taxonRetheraSecCdmtest.addSynonym(synAtroposLeach, SynonymRelationshipType.SYNONYM_OF());\r
- this.taxonDao.clear();\r
+ this.taxonDao.save(taxonRetheraSecCdmtest);\r
+ //this.taxonDao.clear();\r
+ Taxon test = (Taxon)this.taxonDao.findByUuid(retheraSecCdmtest);\r
+ Set<Synonym> synonyms = test.getSynonyms();\r
- // 1. searching for a taxon (Rethera)\r
- //long numberOfTaxa = taxonDao.countTaxaByName(Taxon.class, "Rethera", null, MatchMode.BEGINNING, namedAreas);\r
+ // 1. searching for a taxon (Rethera)\r
+ //long numberOfTaxa = taxonDao.countTaxaByName(Taxon.class, "Rethera", null, MatchMode.BEGINNING, namedAreas);\r
\r
- List<TaxonBase> results = taxonDao.getTaxaByName(Taxon.class, "Rethera", null, MatchMode.BEGINNING, namedAreas,\r
+ List<TaxonBase> results = taxonDao.getTaxaByName(true,false, false, "Rethera", null, MatchMode.BEGINNING, namedAreas,\r
- null, null, null);\r
- assertNotNull("getTaxaByName should return a List", results);\r
- assertTrue("expected to find two taxa but found "+results.size(), results.size() == 2);\r
+ null, null, null);\r
+ assertNotNull("getTaxaByName should return a List", results);\r
+ assertTrue("expected to find two taxa but found "+results.size(), results.size() == 2);\r
\r
- // 2. searching for a taxon (Rethera) contained in a specific classification\r
+ // 2. searching for a taxon (Rethera) contained in a specific classification\r
- results = taxonDao.getTaxaByName(Taxon.class, "Rethera", taxonmicTree, MatchMode.BEGINNING, namedAreas,\r
+ results = taxonDao.getTaxaByName(true, false, false, "Rethera", taxonmicTree, MatchMode.BEGINNING, namedAreas,\r
- null, null, null);\r
- assertNotNull("getTaxaByName should return a List", results);\r
- assertTrue("expected to find one taxon but found "+results.size(), results.size() == 1);\r
+ null, null, null);\r
+ assertNotNull("getTaxaByName should return a List", results);\r
+ assertTrue("expected to find one taxon but found "+results.size(), results.size() == 1);\r
\r
\r
- // 3. searching for Synonyms\r
+ // 3. searching for Synonyms\r
- results = taxonDao.getTaxaByName(Synonym.class, "Atropo", null, MatchMode.ANYWHERE, null,\r
+ results = taxonDao.getTaxaByName(false, true, false, "Atropo", null, MatchMode.ANYWHERE, null,\r
- null, null, null);\r
- assertNotNull("getTaxaByName should return a List", results);\r
+ null, null, null);\r
+ assertNotNull("getTaxaByName should return a List", results);\r
+ /*System.err.println(results.get(0).getTitleCache() + " - " +results.get(1).getTitleCache() + " - " +results.get(2).getTitleCache() );\r
- \r
- \r
+\r
- assertTrue("expected to find two taxa but found "+results.size(), results.size() == 3);\r
++\r
+ System.err.println(((Synonym)results.get(0)).getAcceptedTaxa().contains(taxonRethera)+ " - " +((Synonym)results.get(1)).getAcceptedTaxa().contains(taxonRethera)+ " - " +((Synonym)results.get(2)).getAcceptedTaxa().contains(taxonRethera)+ " - " );\r
+ */\r
+ assertTrue("expected to find three taxa but found "+results.size(), results.size() == 3);\r
\r
- // 4. searching for Synonyms\r
+ // 4. searching for Synonyms\r
- results = taxonDao.getTaxaByName(Synonym.class, "Atropo", null, MatchMode.BEGINNING, null,\r
+ results = taxonDao.getTaxaByName(false, true, false, "Atropo", null, MatchMode.BEGINNING, null,\r
- null, null, null);\r
- assertNotNull("getTaxaByName should return a List", results);\r
+ null, null, null);\r
+ assertNotNull("getTaxaByName should return a List", results);\r
- assertTrue("expected to find two taxa but found "+results.size(), results.size() == 3);\r
+ assertTrue("expected to find three taxa but found "+results.size(), results.size() == 3);\r
\r
\r
- // 5. searching for a Synonyms and Taxa\r
- // create a synonym relationship first\r
+ // 5. searching for a Synonyms and Taxa\r
+ // create a synonym relationship first\r
- results = taxonDao.getTaxaByName(TaxonBase.class, "A", null, MatchMode.BEGINNING, namedAreas,\r
+ results = taxonDao.getTaxaByName(true, true, false, "A", null, MatchMode.BEGINNING, namedAreas,\r
- null, null, null);\r
+ null, null, null);\r
+ //only five taxa have a distribution \r
- assertNotNull("getTaxaByName should return a List", results);\r
+ assertNotNull("getTaxaByName should return a List", results);\r
- assertTrue("expected to find 8 taxa but found "+results.size(), results.size() == 8);\r
+ assertTrue("expected to find 7 taxa but found "+results.size(), results.size() == 8);\r
- }\r
-\r
-\r
- /**\r
- * Test method for {@link eu.etaxonomy.cdm.persistence.dao.hibernate.taxon.TaxonDaoHibernateImpl#findByNameTitleCache(Class<? extends TaxonBase>clazz, String queryString, Classification classification, MatchMode matchMode, Set<NamedArea> namedAreas, Integer pageNumber, Integer pageSize, List<String> propertyPaths)}\r
- * restricting the search by a set of Areas.\r
- */\r
- @SuppressWarnings("unchecked")\r
- @Test\r
- @DataSet("TaxonDaoHibernateImplTest.testGetTaxaByNameAndArea.xml")\r
- public void testFindByNameTitleCache() {\r
-\r
- Set<NamedArea> namedAreas = new HashSet<NamedArea>();\r
- namedAreas.add((NamedArea)definedTermDao.load(northernAmericaUuid));\r
- //namedAreas.add((NamedArea)definedTermDao.load(southernAmericaUuid));\r
- //namedAreas.add((NamedArea)definedTermDao.load(antarcticaUuid));\r
-\r
- Classification classification = classificationDao.findByUuid(classificationUuid);\r
-\r
- // prepare some synonym relation ships for some tests\r
- Synonym synAtroposAgassiz = (Synonym)taxonDao.findByUuid(atroposAgassiz);\r
- Taxon taxonRethera = (Taxon)taxonDao.findByUuid(rethera);\r
- taxonRethera.addSynonym(synAtroposAgassiz, SynonymRelationshipType.SYNONYM_OF());\r
- logger.warn("addSynonym(..)");\r
- this.taxonDao.clear();\r
- Synonym synAtroposLeach = (Synonym)taxonDao.findByUuid(atroposLeach);\r
- Taxon taxonRetheraSecCdmtest = (Taxon)taxonDao.findByUuid(retheraSecCdmtest);\r
- taxonRetheraSecCdmtest.addSynonym(synAtroposLeach, SynonymRelationshipType.SYNONYM_OF());\r
- this.taxonDao.clear();\r
- // 1. searching for a taxon (Rethera)\r
- //long numberOfTaxa = taxonDao.countTaxaByName(Taxon.class, "Rethera", null, MatchMode.BEGINNING, namedAreas);\r
+ }\r
+\r
+\r
+ /**\r
+ * Test method for {@link eu.etaxonomy.cdm.persistence.dao.hibernate.taxon.TaxonDaoHibernateImpl#findByNameTitleCache(Class<? extends TaxonBase>clazz, String queryString, Classification classification, MatchMode matchMode, Set<NamedArea> namedAreas, Integer pageNumber, Integer pageSize, List<String> propertyPaths)}\r
+ * restricting the search by a set of Areas.\r
+ */\r
+ @SuppressWarnings("unchecked")\r
+ @Test\r
+ @DataSet("TaxonDaoHibernateImplTest.testGetTaxaByNameAndArea.xml")\r
+ public void testFindByNameTitleCache() {\r
+\r
+ Set<NamedArea> namedAreas = new HashSet<NamedArea>();\r
+ namedAreas.add((NamedArea)definedTermDao.load(northernAmericaUuid));\r
+ //namedAreas.add((NamedArea)definedTermDao.load(southernAmericaUuid));\r
+ //namedAreas.add((NamedArea)definedTermDao.load(antarcticaUuid));\r
+\r
+ Classification classification = classificationDao.findByUuid(classificationUuid);\r
+\r
+ // prepare some synonym relation ships for some tests\r
+ Synonym synAtroposAgassiz = (Synonym)taxonDao.findByUuid(atroposAgassiz);\r
+ Taxon taxonRethera = (Taxon)taxonDao.findByUuid(rethera);\r
+ taxonRethera.addSynonym(synAtroposAgassiz, SynonymRelationshipType.SYNONYM_OF());\r
+ logger.warn("addSynonym(..)");\r
+ this.taxonDao.clear();\r
+ Synonym synAtroposLeach = (Synonym)taxonDao.findByUuid(atroposLeach);\r
+ Taxon taxonRetheraSecCdmtest = (Taxon)taxonDao.findByUuid(retheraSecCdmtest);\r
+ taxonRetheraSecCdmtest.addSynonym(synAtroposLeach, SynonymRelationshipType.SYNONYM_OF());\r
+ this.taxonDao.clear();\r
+ // 1. searching for a taxon (Rethera)\r
+ //long numberOfTaxa = taxonDao.countTaxaByName(Taxon.class, "Rethera", null, MatchMode.BEGINNING, namedAreas);\r
\r
- List<TaxonBase> results = taxonDao.findByNameTitleCache(Taxon.class, "Rethera Rothschild & Jordan, 1903", null, MatchMode.EXACT, namedAreas,\r
+ List<TaxonBase> results = taxonDao.findByNameTitleCache(true, false, "Rethera Rothschild & Jordan, 1903", null, MatchMode.EXACT, namedAreas,\r
- null, null, null);\r
- assertNotNull("getTaxaByName should return a List", results);\r
- assertTrue("expected to find two taxa but found "+results.size(), results.size() == 2);\r
+ null, null, null);\r
+ assertNotNull("getTaxaByName should return a List", results);\r
+ assertTrue("expected to find two taxa but found "+results.size(), results.size() == 2);\r
\r
- // 2. searching for a taxon (Rethera) contained in a specific classification\r
+ // 2. searching for a taxon (Rethera) contained in a specific classification\r
- results = taxonDao.findByNameTitleCache(Taxon.class, "Rethera Rothschild & Jordan, 1903", classification, MatchMode.EXACT, namedAreas,\r
+ results = taxonDao.findByNameTitleCache(true, false, "Rethera Rothschild & Jordan, 1903", classification, MatchMode.EXACT, namedAreas,\r
- null, null, null);\r
- assertNotNull("getTaxaByName should return a List", results);\r
- assertTrue("expected to find one taxon but found "+results.size(), results.size() == 1);\r
+ null, null, null);\r
+ assertNotNull("getTaxaByName should return a List", results);\r
+ assertTrue("expected to find one taxon but found "+results.size(), results.size() == 1);\r
\r
\r
- // 3. searching for Synonyms\r
+ // 3. searching for Synonyms\r
- results = taxonDao.findByNameTitleCache(Synonym.class, "Atropo", null, MatchMode.ANYWHERE, null,\r
+ results = taxonDao.findByNameTitleCache(false, true, "Atropo", null, MatchMode.ANYWHERE, null,\r
- null, null, null);\r
- assertNotNull("getTaxaByName should return a List", results);\r
+ null, null, null);\r
+ assertNotNull("getTaxaByName should return a List", results);\r
\r
- assertTrue("expected to find two taxa but found "+results.size(), results.size() == 3);\r
+ assertTrue("expected to find two taxa but found "+results.size(), results.size() == 3);\r
\r
- // 4. searching for Synonyms\r
+ // 4. searching for Synonyms\r
- results = taxonDao.findByNameTitleCache(Synonym.class, "Atropo", null, MatchMode.BEGINNING, null,\r
+ results = taxonDao.findByNameTitleCache(false, true, "Atropo", null, MatchMode.BEGINNING, null,\r
- null, null, null);\r
- assertNotNull("getTaxaByName should return a List", results);\r
- assertTrue("expected to find two taxa but found "+results.size(), results.size() == 3);\r
+ null, null, null);\r
+ assertNotNull("getTaxaByName should return a List", results);\r
+ assertTrue("expected to find two taxa but found "+results.size(), results.size() == 3);\r
\r
\r
- // 5. searching for a Synonyms and Taxa\r
- // create a synonym relationship first\r
+ // 5. searching for a Synonyms and Taxa\r
+ // create a synonym relationship first\r
- results = taxonDao.findByNameTitleCache(TaxonBase.class, "A", null, MatchMode.BEGINNING, namedAreas,\r
+ results = taxonDao.findByNameTitleCache(true, true, "A", null, MatchMode.BEGINNING, namedAreas,\r
- null, null, null);\r
- assertNotNull("getTaxaByName should return a List", results);\r
- assertTrue("expected to find 8 taxa but found "+results.size(), results.size() == 8);\r
- }\r
+ null, null, null);\r
+ assertNotNull("getTaxaByName should return a List", results);\r
+ assertTrue("expected to find 8 taxa but found "+results.size(), results.size() == 8);\r
+ }\r
\r
+ @Test\r
+ @DataSet("TaxonDaoHibernateImplTest.testGetTaxaByNameAndArea.xml")\r
+ public void testTaxonNameInTwoClassifications(){\r
+ int numberOfClassifications = classificationDao.count();\r
+ List<String> propertyPaths = new ArrayList<String>();\r
+ propertyPaths.add("taxonNodes");\r
+ List<TaxonBase> taxa = taxonDao.getTaxaByName(true, true, false, "P*", null, MatchMode.BEGINNING, null, null, null, null);\r
+ Taxon taxon = (Taxon)taxa.get(0);\r
+ Set<TaxonNode> nodes = taxon.getTaxonNodes();\r
+ assertTrue(nodes.size() == 1);\r
+ //assertNotNull(taxa);\r
+ //assertTrue(taxa.size() > 0);\r
+ }\r
\r
-\r
- @Test\r
- @DataSet\r
- public void testFindByUuid() {\r
- Taxon taxon = (Taxon)taxonDao.findByUuid(uuid);\r
- assertNotNull("findByUuid should return a taxon",taxon);\r
- assertFalse("findByUuid should not return a taxon with it's name initialized",Hibernate.isInitialized(taxon.getName()));\r
- }\r
-\r
- @Test\r
- @DataSet\r
- public void testLoad() {\r
- List<String> propertyPaths = new ArrayList<String>();\r
- propertyPaths.add("name");\r
- propertyPaths.add("sec");\r
- Taxon taxon = (Taxon)taxonDao.load(uuid, propertyPaths);\r
- assertNotNull("findByUuid should return a taxon",taxon);\r
- assertTrue("load should return a taxon with it's name initialized, given that the property was specified in the method",Hibernate.isInitialized(taxon.getName()));\r
- assertTrue("load should return a taxon with it's secundum reference initialized, given that the property was specified in the method",Hibernate.isInitialized(taxon.getSec()));\r
- }\r
-\r
- @Test\r
- @DataSet\r
- public void testCountTaxonRelationships() {\r
- Taxon taxon = (Taxon)taxonDao.findByUuid(sphingidae);\r
- assert taxon != null : "taxon must exist";\r
-\r
- int numberOfRelatedTaxa = taxonDao.countTaxonRelationships(taxon,TaxonRelationshipType.TAXONOMICALLY_INCLUDED_IN(), TaxonRelationship.Direction.relatedTo);\r
- assertEquals("countTaxonRelationships should return 23", 23, numberOfRelatedTaxa);\r
- }\r
-\r
- @Test\r
- @DataSet\r
- public void testCountTaxaByName() {\r
+ @Test\r
+ @DataSet\r
+ public void testFindByUuid() {\r
+ Taxon taxon = (Taxon)taxonDao.findByUuid(uuid);\r
+ assertNotNull("findByUuid should return a taxon",taxon);\r
+ assertFalse("findByUuid should not return a taxon with it's name initialized",Hibernate.isInitialized(taxon.getName()));\r
+ }\r
+\r
+ @Test\r
+ @DataSet\r
+ public void testLoad() {\r
+ List<String> propertyPaths = new ArrayList<String>();\r
+ propertyPaths.add("name");\r
+ propertyPaths.add("sec");\r
+ Taxon taxon = (Taxon)taxonDao.load(uuid, propertyPaths);\r
+ assertNotNull("findByUuid should return a taxon",taxon);\r
+ assertTrue("load should return a taxon with it's name initialized, given that the property was specified in the method",Hibernate.isInitialized(taxon.getName()));\r
+ assertTrue("load should return a taxon with it's secundum reference initialized, given that the property was specified in the method",Hibernate.isInitialized(taxon.getSec()));\r
+ }\r
+\r
+ @Test\r
+ @DataSet\r
+ public void testCountTaxonRelationships() {\r
+ Taxon taxon = (Taxon)taxonDao.findByUuid(sphingidae);\r
+ assert taxon != null : "taxon must exist";\r
+\r
+ int numberOfRelatedTaxa = taxonDao.countTaxonRelationships(taxon,TaxonRelationshipType.TAXONOMICALLY_INCLUDED_IN(), TaxonRelationship.Direction.relatedTo);\r
+ assertEquals("countTaxonRelationships should return 23", 23, numberOfRelatedTaxa);\r
+ }\r
+\r
+ @Test\r
+ @DataSet\r
+ public void testCountTaxaByName() {\r
- long numberOfTaxa = taxonDao.countTaxaByName(Taxon.class, "A*", null, MatchMode.BEGINNING, null);\r
- assertEquals(numberOfTaxa, 9);\r
- numberOfTaxa = taxonDao.countTaxaByName(Taxon.class, "A*", null, MatchMode.BEGINNING, null);\r
- assertEquals(numberOfTaxa, 9);\r
- numberOfTaxa = taxonDao.countTaxaByName(Synonym.class, "A*", null, MatchMode.BEGINNING, null);\r
+ long numberOfTaxa = taxonDao.countTaxaByName(true, false, false, "A*", null, MatchMode.BEGINNING, null);\r
+ assertEquals(numberOfTaxa, 12);\r
+ numberOfTaxa = taxonDao.countTaxaByName(true, false, false, "A*", null, MatchMode.BEGINNING, null);\r
+ assertEquals(numberOfTaxa, 12);\r
+ numberOfTaxa = taxonDao.countTaxaByName(false, true, false, "A*", null, MatchMode.BEGINNING, null);\r
- assertEquals(numberOfTaxa, 3);\r
+ assertEquals(numberOfTaxa, 3);\r
- numberOfTaxa = taxonDao.countTaxaByName(TaxonBase.class, "A*", null, MatchMode.BEGINNING, null);\r
- assertEquals(numberOfTaxa, 12);\r
- numberOfTaxa = taxonDao.countTaxaByName(TaxonBase.class, "Aasfwerfwf fffe", null, MatchMode.BEGINNING, null);\r
+ numberOfTaxa = taxonDao.countTaxaByName(true, true, false, "A*", null, MatchMode.BEGINNING, null);\r
+ assertEquals(numberOfTaxa, 15);\r
+ numberOfTaxa = taxonDao.countTaxaByName(true, true, false, "Aasfwerfwf fffe", null, MatchMode.BEGINNING, null);\r
- assertEquals(numberOfTaxa, 0);\r
+ assertEquals(numberOfTaxa, 0);\r
// FIXME implement test for search in specific classification\r
// Reference reference = referenceDao.findByUuid(UUID.fromString("596b1325-be50-4b0a-9aa2-3ecd610215f2"));\r
// numberOfTaxa = taxonDao.countTaxaByName("A*", MatchMode.BEGINNING, SelectMode.ALL, null, null);\r
List<SynonymRelationship> synonyms = taxonDao.getSynonyms(taxon, SynonymRelationshipType.HETEROTYPIC_SYNONYM_OF(), null, null,null,null);\r
\r
assertNotNull("getSynonyms should return a List",synonyms);\r
- assertEquals("getSynonyms should return 4 SynonymRelationship entities",synonyms.size(),4);\r
- }\r
-\r
- @Test\r
- @DataSet\r
- public void testPageSynonymRelationships(){\r
- Taxon taxon = (Taxon)taxonDao.findByUuid(acherontia);\r
- assert taxon != null : "taxon must exist";\r
-\r
- List<SynonymRelationship> firstPage = taxonDao.getSynonyms(taxon, null, 4, 0,null,null);\r
- List<SynonymRelationship> secondPage = taxonDao.getSynonyms(taxon, null, 4, 1,null,null);\r
-\r
- assertNotNull("getSynonyms: 4, 0 should return a List",firstPage);\r
- assertEquals("getSynonyms: 4, 0 should return 4 SynonymRelationships", firstPage.size(),4);\r
- assertNotNull("getSynonyms: 4, 1 should return a List",secondPage);\r
- assertEquals("getSynonyms: 4, 1 should return 1 SynonymRelationship",secondPage.size(),1);\r
- }\r
-\r
- @Test\r
- @DataSet\r
- public void testGetTaxonMatchingUninomial() {\r
- List<TaxonBase> result = taxonDao.findTaxaByName(Taxon.class, "Smerinthus", "*", "*", "*",null,null,null);\r
-\r
- assertNotNull("findTaxaByName should return a List", result);\r
- assertEquals("findTaxaByName should return two Taxa",2,result.size());\r
- assertEquals("findTaxaByName should return a Taxon with id 5",5,result.get(0).getId());\r
- }\r
-\r
- @Test\r
- @DataSet\r
- public void testGetTaxonMatchingSpeciesBinomial() {\r
- List<TaxonBase> result = taxonDao.findTaxaByName(Taxon.class,"Smerinthus", null, "kindermannii", null,null,null,null);\r
-\r
- assertNotNull("findTaxaByName should return a List", result);\r
- assertEquals("findTaxaByName should return one Taxon",1,result.size());\r
- assertEquals("findTaxaByName should return a Taxon with id 8",8,result.get(0).getId());\r
- }\r
-\r
- @Test\r
- @DataSet\r
- public void testGetTaxonMatchingTrinomial() {\r
- List<TaxonBase> result = taxonDao.findTaxaByName(Taxon.class,"Cryptocoryne", null,"purpurea","borneoensis",null,null,null);\r
-\r
- assertNotNull("findTaxaByName should return a List", result);\r
- assertEquals("findTaxaByName should return one Taxon",1,result.size());\r
- assertEquals("findTaxaByName should return a Taxon with id 38",38,result.get(0).getId());\r
- }\r
-\r
- @Test\r
- @DataSet\r
- public void testNegativeMatch() {\r
- List<TaxonBase> result = taxonDao.findTaxaByName(Taxon.class,"Acherontia", null,"atropos","dehli",null,null,null);\r
-\r
- assertNotNull("findTaxaByName should return a List", result);\r
- assertTrue("findTaxaByName should return an empty List",result.isEmpty());\r
- }\r
-\r
- @Test\r
- @DataSet\r
- public void testCountAllTaxa() {\r
- int numberOfTaxa = taxonDao.count(Taxon.class);\r
+ assertEquals("getSynonyms should return 4 SynonymRelationship entities",synonyms.size(),4);\r
+ }\r
+\r
+ @Test\r
+ @DataSet\r
+ public void testPageSynonymRelationships(){\r
+ Taxon taxon = (Taxon)taxonDao.findByUuid(acherontia);\r
+ assert taxon != null : "taxon must exist";\r
+\r
+ List<SynonymRelationship> firstPage = taxonDao.getSynonyms(taxon, null, 4, 0,null,null);\r
+ List<SynonymRelationship> secondPage = taxonDao.getSynonyms(taxon, null, 4, 1,null,null);\r
+\r
+ assertNotNull("getSynonyms: 4, 0 should return a List",firstPage);\r
+ assertEquals("getSynonyms: 4, 0 should return 4 SynonymRelationships", firstPage.size(),4);\r
+ assertNotNull("getSynonyms: 4, 1 should return a List",secondPage);\r
+ assertEquals("getSynonyms: 4, 1 should return 1 SynonymRelationship",secondPage.size(),1);\r
+ }\r
+\r
+ @Test\r
+ @DataSet\r
+ public void testGetTaxonMatchingUninomial() {\r
+ List<TaxonBase> result = taxonDao.findTaxaByName(Taxon.class, "Smerinthus", "*", "*", "*",null,null,null);\r
+\r
+ assertNotNull("findTaxaByName should return a List", result);\r
+ assertEquals("findTaxaByName should return two Taxa",2,result.size());\r
+ assertEquals("findTaxaByName should return a Taxon with id 5",5,result.get(0).getId());\r
+ }\r
+\r
+ @Test\r
+ @DataSet\r
+ public void testGetTaxonMatchingSpeciesBinomial() {\r
+ List<TaxonBase> result = taxonDao.findTaxaByName(Taxon.class,"Smerinthus", null, "kindermannii", null,null,null,null);\r
+\r
+ assertNotNull("findTaxaByName should return a List", result);\r
+ assertEquals("findTaxaByName should return one Taxon",1,result.size());\r
+ assertEquals("findTaxaByName should return a Taxon with id 8",8,result.get(0).getId());\r
+ }\r
+\r
+ @Test\r
+ @DataSet\r
+ public void testGetTaxonMatchingTrinomial() {\r
+ List<TaxonBase> result = taxonDao.findTaxaByName(Taxon.class,"Cryptocoryne", null,"purpurea","borneoensis",null,null,null);\r
+\r
+ assertNotNull("findTaxaByName should return a List", result);\r
+ assertEquals("findTaxaByName should return one Taxon",1,result.size());\r
+ assertEquals("findTaxaByName should return a Taxon with id 38",38,result.get(0).getId());\r
+ }\r
+\r
+ @Test\r
+ @DataSet\r
+ public void testNegativeMatch() {\r
+ List<TaxonBase> result = taxonDao.findTaxaByName(Taxon.class,"Acherontia", null,"atropos","dehli",null,null,null);\r
+\r
+ assertNotNull("findTaxaByName should return a List", result);\r
+ assertTrue("findTaxaByName should return an empty List",result.isEmpty());\r
+ }\r
+\r
+ @Test\r
+ @DataSet\r
+ public void testCountAllTaxa() {\r
+ int numberOfTaxa = taxonDao.count(Taxon.class);\r
- assertEquals("count should return 33 taxa",33, numberOfTaxa);\r
+ assertEquals("count should return 36 taxa",36, numberOfTaxa);\r
- }\r
+ }\r
\r
- @Test\r
- @DataSet\r
- public void testListAllTaxa() {\r
- List<TaxonBase> taxa = taxonDao.list(Taxon.class,100, 0);\r
- assertNotNull("list should return a List",taxa);\r
+ @Test\r
+ @DataSet\r
+ public void testListAllTaxa() {\r
+ List<TaxonBase> taxa = taxonDao.list(Taxon.class,100, 0);\r
+ assertNotNull("list should return a List",taxa);\r
- assertEquals("list should return 33 taxa",33, taxa.size());\r
+ assertEquals("list should return 36 taxa",36, taxa.size());\r
- }\r
-\r
- @Test\r
- @DataSet\r
- @ExpectedDataSet\r
- public void testDelete() {\r
- Taxon taxon = (Taxon)taxonDao.findByUuid(acherontia);\r
- assert taxon != null : "taxon must exist";\r
- taxonDao.delete(taxon);\r
- setComplete();\r
- endTransaction();\r
- try {printDataSet(new FileOutputStream("test.xml"));} catch(Exception e) { }\r
- }\r
-\r
- @Test\r
- @DataSet\r
- public void testDeleteWithChildren() {\r
- Taxon taxonWithChildren = (Taxon)taxonDao.findByUuid(mimas);\r
- assert taxonWithChildren != null : "taxon must exist";\r
- assertEquals(taxonWithChildren.getTaxonomicChildrenCount(), 2);\r
- Taxon parent = (Taxon)taxonDao.findByUuid(sphingidae);\r
- assertSame(taxonWithChildren.getTaxonomicParent(), parent);\r
- assertEquals(parent.getTaxonomicChildrenCount(), 204);\r
- taxonDao.delete(taxonWithChildren);\r
- assertEquals(parent.getTaxonomicChildrenCount(), 203);\r
- }\r
-\r
- @Test\r
+ }\r
+\r
+ @Test\r
+ @DataSet\r
+ @ExpectedDataSet\r
+ public void testDelete() {\r
+ Taxon taxon = (Taxon)taxonDao.findByUuid(acherontia);\r
+ assert taxon != null : "taxon must exist";\r
+ taxonDao.delete(taxon);\r
+ setComplete();\r
+ endTransaction();\r
+ try {\r
+ printDataSet(new FileOutputStream("test.xml"), TABLE_NAMES);\r
+ } catch (FileNotFoundException e) {\r
+ e.printStackTrace();\r
+ }\r
+ }\r
+\r
+ @Test\r
+ @DataSet\r
+ public void testDeleteWithChildren() {\r
+ Taxon taxonWithChildren = (Taxon)taxonDao.findByUuid(mimas);\r
+ assert taxonWithChildren != null : "taxon must exist";\r
+ assertEquals(taxonWithChildren.getTaxonomicChildrenCount(), 2);\r
+ Taxon parent = (Taxon)taxonDao.findByUuid(sphingidae);\r
+ assertSame(taxonWithChildren.getTaxonomicParent(), parent);\r
+ assertEquals(parent.getTaxonomicChildrenCount(), 204);\r
+ taxonDao.delete(taxonWithChildren);\r
+ assertEquals(parent.getTaxonomicChildrenCount(), 203);\r
+ }\r
+\r
+ @Test\r
@DataSet("TaxonDaoHibernateImplTest.testFindDeleted.xml")\r
public void testFindDeleted() {\r
- TaxonBase taxon = taxonDao.findByUuid(acherontia);\r
- assertNull("findByUuid should return null in this view", taxon);\r
- assertFalse("exist should return false in this view",taxonDao.exists(acherontia));\r
+ TaxonBase taxon = taxonDao.findByUuid(acherontia);\r
+ assertNull("findByUuid should return null in this view", taxon);\r
+ assertFalse("exist should return false in this view",taxonDao.exists(acherontia));\r
}\r
\r
@Test\r
public void testGetCommonName(){\r
\r
\r
- List textData = taxonDao.getTaxaByCommonName("common%", null,\r
+ List<Object[]> commonNameResults = taxonDao.getTaxaByCommonName("common%", null,\r
- MatchMode.BEGINNING, null, null, null, null);\r
+ MatchMode.BEGINNING, null, null, null, null);\r
\r
- assertNotNull("getTaxaByCommonName should return a list", textData);\r
- assertFalse("the list should not be empty", textData.isEmpty());\r
- assertEquals("There should be one Taxon with common name", 1,textData.size());\r
- // System.err.println("Number of common names: " +textData.size());\r
+ assertNotNull("getTaxaByCommonName should return a list", commonNameResults);\r
+ assertFalse("the list should not be empty", commonNameResults.isEmpty());\r
+ assertEquals("There should be one Taxon with common name", 1,commonNameResults.size());\r
+ assertEquals(" sec. ???", ((TaxonBase)commonNameResults.get(0)[0]).getTitleCache());\r
\r
}\r
\r
<?xml version='1.0' encoding='UTF-8'?>\r
<dataset xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:noNamespaceSchemaLocation="../dataset.xsd">
- <DESCRIPTIONBASE DTYPE="TaxonDescription" ID="1" CREATED="2008-12-10 09:56:07.0" UUID="5f3265ed-68ad-4ec3-826f-0d29d25986b9" UPDATED="2008-12-10 09:56:07.253" TITLECACHE=" sec. ???" PROTECTEDTITLECACHE="true" TAXON_ID="1" IMAGEGALLERY="false" />
- <DESCRIPTIONBASE DTYPE="TaxonDescription" ID="2" CREATED="2008-12-10 09:56:07.0" UUID="d69d6d40-eb98-42f9-8d30-fbeb0a7db33b" UPDATED="2008-12-10 09:56:07.253" TITLECACHE=" sec. ???" PROTECTEDTITLECACHE="true" TAXON_ID="2" IMAGEGALLERY="false" />
- <DESCRIPTIONBASE DTYPE="TaxonDescription" ID="3" CREATED="2008-12-10 09:56:07.0" UUID="c6782124-7cf0-4454-880f-c4f16dc03105" UPDATED="2008-12-10 09:56:07.253" TITLECACHE="Sphingidae Linnaeus, 1758 sec. cate-sphingidae.org" PROTECTEDTITLECACHE="true" TAXON_ID="3" IMAGEGALLERY="false" />
- <DESCRIPTIONBASE DTYPE="TaxonDescription" ID="4" CREATED="2008-12-10 09:56:07.0" UUID="68ff9cb2-3fc0-4580-8295-bbb0de0d42bf" UPDATED="2008-12-10 09:56:07.253" TITLECACHE="Lathoe Fabricius, 1807 sec. cate-sphingidae.org" PROTECTEDTITLECACHE="true" TAXON_ID="4" IMAGEGALLERY="false"/>
- <DESCRIPTIONBASE DTYPE="TaxonDescription" ID="5" CREATED="2008-12-10 09:56:07.0" UUID="1240e8ba-32a2-4914-ad00-2f87e18ab65e" UPDATED="2008-12-10 09:56:07.253" TITLECACHE="Smerinthus Latreille, 1802 sec. cate-sphingidae.org" PROTECTEDTITLECACHE="true" TAXON_ID="5" IMAGEGALLERY="false"/>
- <DESCRIPTIONBASE DTYPE="TaxonDescription" ID="6" CREATED="2008-12-10 09:56:07.0" UUID="5c4bef76-72a6-4e39-a6d8-1d8707519d7a" UPDATED="2008-12-10 09:56:07.253" TITLECACHE="Manduca Hübner, 1807 sec. cate-sphingidae.org" PROTECTEDTITLECACHE="true" TAXON_ID="6" IMAGEGALLERY="false"/>
- <DESCRIPTIONBASE DTYPE="TaxonDescription" ID="7" CREATED="2008-12-10 09:56:07.0" UUID="40dadf87-4a1c-4852-afb4-6787a4e75854" UPDATED="2008-12-10 09:56:07.253" TITLECACHE="Lepchina Oberthür, 1904 sec. cate-sphingidae.org" PROTECTEDTITLECACHE="true" TAXON_ID="7" IMAGEGALLERY="false"/>
- <DESCRIPTIONBASE DTYPE="TaxonDescription" ID="8" CREATED="2008-12-10 09:56:07.0" UUID="1f02a155-3669-464b-99a9-4c36307549ce" UPDATED="2008-12-10 09:56:07.253" TITLECACHE="Smerinthus kindermannii Lederer, 1853 sec. cate-sphingidae.org" PROTECTEDTITLECACHE="true" TAXON_ID="8" IMAGEGALLERY="false"/>
- <DESCRIPTIONBASE DTYPE="TaxonDescription" ID="9" CREATED="2008-12-10 09:56:07.0" UUID="b58fb240-01ac-4a68-99f7-1ccb5576d663" UPDATED="2008-12-10 09:56:07.253" TITLECACHE="Mimas Hübner, 1819 sec. cate-sphingidae.org" PROTECTEDTITLECACHE="true" TAXON_ID="9" IMAGEGALLERY="false"/>
- <DESCRIPTIONBASE DTYPE="TaxonDescription" ID="10" CREATED="2008-12-10 09:56:07.0" UUID="5b99a457-e776-41a8-b18b-58c5fb0b7b60" UPDATED="2008-12-10 09:56:07.253" TITLECACHE="Callambulyx Rothschild & Jordan, 1903 sec. cate-sphingidae.org" PROTECTEDTITLECACHE="true" TAXON_ID="10" IMAGEGALLERY="false"/>
- <DESCRIPTIONBASE DTYPE="TaxonDescription" ID="11" CREATED="2008-12-10 09:56:07.0" UUID="3316a5a7-56f5-4e12-b6ed-c1758e0d2065" UPDATED="2008-12-10 09:56:07.253" TITLECACHE="Dolbina Staudinger, 1877 sec. cate-sphingidae.org" PROTECTEDTITLECACHE="true" TAXON_ID="11" IMAGEGALLERY="false"/>
- <DESCRIPTIONBASE DTYPE="TaxonDescription" ID="12" CREATED="2008-12-10 09:56:07.0" UUID="0e9bf65a-1322-408c-bf9e-01ea6834f191" UPDATED="2008-12-10 09:56:07.253" TITLECACHE="Akbesia Rothschild & Jordan, 1903 sec. cate-sphingidae.org" PROTECTEDTITLECACHE="true" TAXON_ID="12" IMAGEGALLERY="false"/>
- <DESCRIPTIONBASE DTYPE="TaxonDescription" ID="13" CREATED="2008-12-10 09:56:07.0" UUID="1f17b094-77a6-4f0b-b687-f6cd0b3f5cb8" UPDATED="2008-12-10 09:56:07.253" TITLECACHE="Sphinx Linnaeus, 1758 sec. cate-sphingidae.org" PROTECTEDTITLECACHE="true" TAXON_ID="13" IMAGEGALLERY="false"/>
- <DESCRIPTIONBASE DTYPE="TaxonDescription" ID="14" CREATED="2008-12-10 09:56:07.0" UUID="eb591ebe-bec2-4639-b449-c3fd7f5e129c" UPDATED="2008-12-10 09:56:07.253" TITLECACHE="Agrius Hübner, 1819 sec. cate-sphingidae.org" PROTECTEDTITLECACHE="true" TAXON_ID="14" IMAGEGALLERY="false"/>
- <DESCRIPTIONBASE DTYPE="TaxonDescription" ID="15" CREATED="2008-12-10 09:56:07.0" UUID="f2a093ed-7d09-45ea-abca-366a299b19d3" UPDATED="2008-12-10 09:56:07.253" TITLECACHE="Acherontia Laspeyres, 1809 sec. cate-sphingidae.org" PROTECTEDTITLECACHE="true" TAXON_ID="15" IMAGEGALLERY="false"/>
- <DESCRIPTIONBASE DTYPE="TaxonDescription" ID="16" CREATED="2008-12-10 09:56:07.0" UUID="f6367b5a-6466-4cf2-8eb0-23a558514914" UPDATED="2008-12-10 09:56:07.253" TITLECACHE="Hemaris Dalman, 1816 sec. cate-sphingidae.org" PROTECTEDTITLECACHE="true" TAXON_ID="16" IMAGEGALLERY="false"/>
- <DESCRIPTIONBASE DTYPE="TaxonDescription" ID="17" CREATED="2008-12-10 09:56:07.0" UUID="fd9fe4e0-5137-483c-a8ee-c27d2f45d308" UPDATED="2008-12-10 09:56:07.253" TITLECACHE="Proserpinus Hübner, 1819 sec. cate-sphingidae.org" PROTECTEDTITLECACHE="true" TAXON_ID="17" IMAGEGALLERY="false"/>
- <DESCRIPTIONBASE DTYPE="TaxonDescription" ID="18" CREATED="2008-12-10 09:56:07.0" UUID="5bb4bd8f-9d96-4535-8a7b-3895bc229fd0" UPDATED="2008-12-10 09:56:07.253" TITLECACHE="Sphingonaepiopsis Wallengren, 1858 sec. cate-sphingidae.org" PROTECTEDTITLECACHE="true" TAXON_ID="18" IMAGEGALLERY="false"/>
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+ -->\r
-\r
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- <TAXONNAMEBASE_AUD DTYPE="ZoologicalName" ID="33" REV="1000" REVTYPE="0" CREATED="2008-12-10 09:56:07.0" UUID="666ecfcd-9ee3-41d4-8c47-7cb692cb7f27" UPDATED="2008-12-10 09:56:07.238" TITLECACHE="Manduca bergarmatipes (Clark, 1927)" PROTECTEDTITLECACHE="true" PARSINGPROBLEM="0" FULLTITLECACHE="" PROBLEMENDS="-1" PROBLEMSTARTS="-1" PROTECTEDFULLTITLECACHE="true" AUTHORSHIPCACHE="(Clark, 1927)" NAMECACHE="Manduca bergarmatipes" PROTECTEDAUTHORSHIPCACHE="true" PROTECTEDNAMECACHE="true" ANAMORPHIC="false" BINOMHYBRID="false" HYBRIDFORMULA="false" MONOMHYBRID="false" TRINOMHYBRID="false" HOMOTYPICALGROUP_ID="32" RANK_ID="765" GENUSORUNINOMIAL="Manduca" SPECIFICEPITHET="bergarmatipes" NOMENCLATURALREFERENCE_ID="1"/>\r
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+ <TAXONNAMEBASE DTYPE="BotanicalName" ID="39" CREATED="2008-12-10 09:56:07.0" UUID="17de5598-1642-4983-9ba8-1002aeefb8b4" UPDATED="2008-12-10 09:56:07.238" TITLECACHE="Acacia subg. Phyllodineae N.Jacobsen, Bastm. & Yuji Sasaki" PROTECTEDTITLECACHE="true" PARSINGPROBLEM="0" FULLTITLECACHE="" PROBLEMENDS="-1" PROBLEMSTARTS="-1" PROTECTEDFULLTITLECACHE="true" AUTHORSHIPCACHE="N.Jacobsen, Bastm. & Yuji Sasaki" NAMECACHE="Acacia subg. Phyllodineae" PROTECTEDAUTHORSHIPCACHE="true" PROTECTEDNAMECACHE="true" ANAMORPHIC="false" BINOMHYBRID="false" HYBRIDFORMULA="false" MONOMHYBRID="false" TRINOMHYBRID="false" HOMOTYPICALGROUP_ID="37" RANK_ID="773" GENUSORUNINOMIAL="Acacia" SPECIFICEPITHET="" INFRAGENERICEPITHET="Phyllodineae" NOMENCLATURALREFERENCE_ID="1"/>\r
+ <TAXONNAMEBASE DTYPE="BotanicalName" ID="40" CREATED="2008-12-10 09:56:07.0" UUID="0136863b-559c-4675-b310-a40a4263db57" UPDATED="2008-12-10 09:56:07.238" TITLECACHE="Acacia anegadensis N.Jacobsen" PROTECTEDTITLECACHE="true" PARSINGPROBLEM="0" FULLTITLECACHE="" PROBLEMENDS="-1" PROBLEMSTARTS="-1" PROTECTEDFULLTITLECACHE="true" AUTHORSHIPCACHE="N.Jacobsen" NAMECACHE="Acacia anegadensis" PROTECTEDAUTHORSHIPCACHE="true" PROTECTEDNAMECACHE="true" ANAMORPHIC="false" BINOMHYBRID="false" HYBRIDFORMULA="false" MONOMHYBRID="false" TRINOMHYBRID="false" HOMOTYPICALGROUP_ID="37" RANK_ID="765" GENUSORUNINOMIAL="Acacia" SPECIFICEPITHET="anegadensis" INFRAGENERICEPITHET="" NOMENCLATURALREFERENCE_ID="1"/>\r
+ <TAXONNAMEBASE DTYPE="BotanicalName" ID="41" CREATED="2008-12-10 09:56:07.0" UUID="3f2a6834-b824-4f07-83f4-19d1700b7f28" UPDATED="2008-12-10 09:56:07.238" TITLECACHE="Acacia sect. Botrycephalae Yuji Sasaki" PROTECTEDTITLECACHE="true" PARSINGPROBLEM="0" FULLTITLECACHE="" PROBLEMENDS="-1" PROBLEMSTARTS="-1" PROTECTEDFULLTITLECACHE="true" AUTHORSHIPCACHE="Yuji Sasaki" NAMECACHE="Acacia sect. Botrycephalae" PROTECTEDAUTHORSHIPCACHE="true" PROTECTEDNAMECACHE="true" ANAMORPHIC="false" BINOMHYBRID="false" HYBRIDFORMULA="false" MONOMHYBRID="false" TRINOMHYBRID="false" HOMOTYPICALGROUP_ID="37" RANK_ID="771" GENUSORUNINOMIAL="Acacia" SPECIFICEPITHET="" INFRAGENERICEPITHET="Botrycephalae" NOMENCLATURALREFERENCE_ID="1"/>\r
+ \r
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+ <TAXONNAMEBASE_AUD DTYPE="BotanicalName" ID="2" REV="1000" REVTYPE="0" CREATED="2008-12-10 09:56:07.0" UUID="05a438d6-065f-49ef-84db-c7dc2c259975" UPDATED="2008-12-10 09:56:07.253" TITLECACHE=" " PROTECTEDTITLECACHE="true" PARSINGPROBLEM="0" FULLTITLECACHE=" " PROBLEMENDS="-1" PROBLEMSTARTS="-1" PROTECTEDFULLTITLECACHE="true" AUTHORSHIPCACHE="" NAMECACHE="Aus aus" PROTECTEDAUTHORSHIPCACHE="true" PROTECTEDNAMECACHE="true" ANAMORPHIC="false" BINOMHYBRID="false" HYBRIDFORMULA="false" MONOMHYBRID="false" TRINOMHYBRID="false" HOMOTYPICALGROUP_ID="2" RANK_ID="765" GENUSORUNINOMIAL="Aus" SPECIFICEPITHET="aus" INFRASPECIFICEPITHET="[null]" NOMENCLATURALREFERENCE_ID="1"/>\r
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+ <TAXONNAMEBASE_AUD DTYPE="ZoologicalName" ID="4" REV="1000" REVTYPE="0" CREATED="2008-12-10 09:56:07.0" UUID="446d8d76-e206-49e1-b6da-d06ce1f296e1" UPDATED="2008-12-10 09:56:07.238" TITLECACHE="Lathoe Fabricius, 1807" PROTECTEDTITLECACHE="true" PARSINGPROBLEM="0" FULLTITLECACHE="" PROBLEMENDS="-1" PROBLEMSTARTS="-1" PROTECTEDFULLTITLECACHE="true" AUTHORSHIPCACHE="Fabricius, 1807" NAMECACHE="Laothoe" PROTECTEDAUTHORSHIPCACHE="true" PROTECTEDNAMECACHE="true" ANAMORPHIC="false" BINOMHYBRID="false" HYBRIDFORMULA="false" MONOMHYBRID="false" TRINOMHYBRID="false" HOMOTYPICALGROUP_ID="4" RANK_ID="774" GENUSORUNINOMIAL="Laothoe" SPECIFICEPITHET="[null]" INFRASPECIFICEPITHET="[null]" NOMENCLATURALREFERENCE_ID="1"/>\r
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</dataset>
<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
- <!--
- xsi:schemaLocation="http://maven.apache.org/POM/4.0.0
- http://maven.apache.org/maven-v4_0_0.xsd"
+ <!--
+ xsi:schemaLocation="http://maven.apache.org/POM/4.0.0
+ http://maven.apache.org/maven-v4_0_0.xsd"
-->
- <groupId>eu.etaxonomy</groupId>
-
<artifactId>cdmlib-parent</artifactId>
+ <parent>
+ <groupId>eu.etaxonomy</groupId>
+ <artifactId>cdmlib-parent</artifactId>
- <version>3.0.9-SNAPSHOT</version>
+ <version>3.0.10-SNAPSHOT</version>
- <relativePath>../pom.xml</relativePath>
- </parent>
-
+ <relativePath>../pom.xml</relativePath>
+ </parent>
+
<modelVersion>4.0.0</modelVersion>
<artifactId>cdmlib-remote</artifactId>
<properties>
<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
- <!--
+ <!--
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd"
-->
- <groupId>eu.etaxonomy</groupId>
-
<artifactId>cdmlib-parent</artifactId>
+ <parent>
+ <groupId>eu.etaxonomy</groupId>
+ <artifactId>cdmlib-parent</artifactId>
- <version>3.0.9-SNAPSHOT</version>
+ <version>3.0.10-SNAPSHOT</version>
- <relativePath>../pom.xml</relativePath>
- </parent>
+ <relativePath>../pom.xml</relativePath>
+ </parent>
<modelVersion>4.0.0</modelVersion>
<artifactId>cdmlib-services</artifactId>
<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
- <modelVersion>4.0.0</modelVersion>
- <groupId>eu.etaxonomy</groupId>
-
<artifactId>cdmlib-parent</artifactId>
+ <modelVersion>4.0.0</modelVersion>
+ <groupId>eu.etaxonomy</groupId>
+ <artifactId>cdmlib-parent</artifactId>
- <version>3.0.9-SNAPSHOT</version>
+ <version>3.0.10-SNAPSHOT</version>
- <name>CDM Library</name>
- <description>The Java implementation of the Common Data Model (CDM), the data model for EDIT's internet platform for cybertaxonomy.</description>
- <url>http://wp5.e-taxonomy.eu/cdmlib/</url>
- <inceptionYear>2007</inceptionYear>
- <packaging>pom</packaging>
- <modules>
- <module>cdmlib-commons</module>
- <module>cdmlib-model</module>
- <module>cdmlib-persistence</module>
- <module>cdmlib-services</module>
- <module>cdmlib-ext</module>
- <module>cdmlib-io</module>
- <module>cdmlib-remote</module>
- <module>cdmlib-print</module>
- <module>cdmlib-remote-webapp</module>
- </modules>
- <properties>
- <spring.version>3.0.4.RELEASE</spring.version>
+ <name>CDM Library</name>
+ <description>The Java implementation of the Common Data Model (CDM), the data model for EDIT's internet platform for cybertaxonomy.</description>
+ <url>http://wp5.e-taxonomy.eu/cdmlib/</url>
+ <inceptionYear>2007</inceptionYear>
+ <packaging>pom</packaging>
+ <modules>
+ <module>cdmlib-commons</module>
+ <module>cdmlib-model</module>
+ <module>cdmlib-persistence</module>
+ <module>cdmlib-services</module>
+ <module>cdmlib-ext</module>
+ <module>cdmlib-io</module>
+ <module>cdmlib-remote</module>
+ <module>cdmlib-print</module>
+ <module>cdmlib-remote-webapp</module>
+ </modules>
+ <properties>
+ <spring.version>3.0.4.RELEASE</spring.version>
+ <hibernate.version>3.4.0-SNAPSHOT</hibernate.version>
- <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
- </properties>
- <scm>
- <connection>scm:svn:http://dev.e-taxonomy.eu/svn/trunk/cdmlib/</connection>
- <developerConnection>scm:svn:http://dev.e-taxonomy.eu/svn/trunk/cdmlib/</developerConnection>
- <url>http://dev.e-taxonomy.eu/trac/browser/trunk/cdmlib</url>
- </scm>
- <mailingLists>
- <mailingList>
- <name>dev-edit</name>
- <subscribe>
- https://webmail.mnhn.fr/wws/subrequest/dev-edit
- </subscribe>
- <unsubscribe>
- https://webmail.mnhn.fr/wws/sigrequest/dev-edit
- </unsubscribe>
- <post>dev-edit@mnhn.fr</post>
- <archive>https://webmail.mnhn.fr/wws/arc/dev-edit/</archive>
- </mailingList>
- <mailingList>
- <name>cdm-edit</name>
- <post>cdm-edit@mnhn.fr</post>
- <subscribe>
- https://webmail.mnhn.fr/wws/subrequest/cdm-edit
- </subscribe>
- <unsubscribe>
- https://webmail.mnhn.fr/wws/sigrequest/cdm-edit
- </unsubscribe>
- <archive>https://webmail.mnhn.fr/wws/arc/cdm-edit/</archive>
- </mailingList>
- </mailingLists>
- <licenses>
- <license>
- <name>Mozilla Public License Version 1.1</name>
- <url>http://www.mozilla.org/MPL/MPL-1.1.html</url>
- <distribution>repo</distribution>
- </license>
- </licenses>
- <organization>
- <name>EDIT</name>
- <url>http://www.e-taxonomy.eu/</url>
- </organization>
- <developers>
- <developer>
- <!-- your SVN account id please! -->
- <id>ben.clark</id>
- <name>
- Ben Clark
- </name>
- <email>b.clark [at] kew.org</email>
- <organization>
- Royal Botanic Gardens, Kew
- </organization>
- <organizationUrl>http://www.kew.org/computing/</organizationUrl>
- <timezone>0</timezone>
- <roles>
- <role>Architect</role>
- <role>Java Developer</role>
- </roles>
- <url />
- </developer>
- <developer>
- <!-- your SVN account id please! -->
- <id>n.hoffmann</id>
- <name>
- Niels Hoffmann
- </name>
- <email>n.hoffmann [at] bgbm.org</email>
- <organization>
- Botanic Garden Botanical Museum Berlin
- </organization>
- <organizationUrl>http://www.bgbm.org/BioDivInf/</organizationUrl>
- <timezone>+1</timezone>
- <roles>
- <role>Java Developer</role>
- </roles>
- <url />
- </developer>
- <developer>
- <!-- your SVN account id please! -->
- <id>a.kohlbecker</id>
- <name>
- Andreas Kohlbecker
- </name>
- <email>a.kohlbecker [at] bgbm.org</email>
- <organization>
- Botanical Garden Botanical Museum Berlin
- </organization>
- <organizationUrl>http://www.bgbm.org/BioDivInf/</organizationUrl>
- <timezone>+1</timezone>
- <roles>
- <role>Java Developer</role>
- </roles>
- <url />
- </developer>
- <developer>
- <!-- your SVN account id please! -->
- <id>k.luther</id>
- <name>
- Katja Luther
- </name>
- <email>k.luther [at] bgbm.org</email>
- <organization>
- Botanical Garden Botanical Museum Berlin
- </organization>
- <organizationUrl>http://www.bgbm.org/BioDivInf/</organizationUrl>
- <timezone>+1</timezone>
- <roles>
- <role>Java Developer</role>
- </roles>
- <url />
- </developer>
- <developer>
- <!-- your SVN account id please! -->
- <id>a.mueller</id>
- <name>
- Andreas Müller
- </name>
- <email>a.mueller [at] bgbm.org</email>
- <organization>
- Botanical Garden Botanical Museum Berlin
- </organization>
- <organizationUrl>http://www.bgbm.org/BioDivInf/</organizationUrl>
- <timezone>+1</timezone>
- <roles>
- <role>Architect</role>
- <role>Java Developer</role>
- <role>Release Manager</role>
- </roles>
- <url />
- </developer>
- <developer>
- <!-- your SVN account id please! -->
- <id>f.revilla</id>
- <name>
- Francisco Revilla
- </name>
- <email>f.revilla [at] bgbm.org</email>
- <organization>
- Botanical Garden Botanical Museum Berlin
- </organization>
- <organizationUrl>http://www.bgbm.org/BioDivInf/</organizationUrl>
- <timezone>+1</timezone>
- <roles>
- <role>Java Developer</role>
- </roles>
- <url />
- </developer>
- </developers>
- <!--contributors>
- <contributor>
- <name>Test-Contributor</name>
- </contributor>
- </contributors-->
- <issueManagement>
- <system>Trac</system>
- <url>http://dev.e-taxonomy.eu/trac/</url>
- </issueManagement>
- <ciManagement>
- <system>Hudson</system>
- <url>http://160.45.63.201/hudson</url>
- </ciManagement>
- <!-- **** REPOSITORIES **** -->
- <repositories>
- <!-- sun repository -->
- <repository>
- <id>java.net</id>
- <url>http://download.java.net/maven/1/</url>
- </repository>
- <!-- the cdm internal repository -->
- <repository>
- <id>EditRepository</id>
- <url>http://wp5.e-taxonomy.eu/mavenrepo/</url>
- </repository>
- <!-- apache incubating repository -->
- <repository>
- <id>ApacheIncubating</id>
- <url>http://people.apache.org/repo/m2-incubating-repository/</url>
- </repository>
- <!-- Neccessary for hibernate-envers -->
- <repository>
- <releases>
- <enabled>true</enabled>
- <updatePolicy>always</updatePolicy>
- <checksumPolicy>warn</checksumPolicy>
- </releases>
- <snapshots>
- <enabled>false</enabled>
- <updatePolicy>never</updatePolicy>
- <checksumPolicy>fail</checksumPolicy>
- </snapshots>
- <id>jboss-repository</id>
- <name>JBoss Repository</name>
- <url>http://repository.jboss.com</url>
- </repository>
- <!-- codehaus mule repository needed for yourkit -->
- <repository>
- <id>CodehausMuleRepository</id>
- <url>http://dist.codehaus.org/mule/dependencies/maven2/</url>
- </repository>
- <!-- current spring source repositories -->
- <repository>
- <id>SpringSource Enterprise Bundle Repository - External Bundle Milestones</id>
- <url>http://repository.springsource.com/maven/bundles/milestone</url>
- </repository>
- <repository>
- <id>SpringSource Enterprise Bundle Repository - SpringSource Bundle Releases</id>
- <url>http://repository.springsource.com/maven/bundles/release</url>
- </repository>
- <repository>
- <id>SpringSource Enterprise Bundle Repository - External Bundle Releases</id>
- <url>http://repository.springsource.com/maven/bundles/external</url>
- </repository>
- </repositories>
- <!-- **** PLUGINS **** -->
- <build>
- <plugins>
- <plugin>
- <artifactId>maven-compiler-plugin</artifactId>
- <configuration>
- <source>1.6</source>
- <target>1.6</target>
- </configuration>
- </plugin>
- <plugin>
- <artifactId>maven-surefire-plugin</artifactId>
- <configuration>
- <argLine>-Xmx512M</argLine>
- <includes>
- <include>**/*Test.java</include>
- </includes>
- <systemProperties>
- <property>
- <name>hibernate.connection.driver_class</name>
- <value>${hibernate.connection.driver_class}</value>
- </property>
- <property>
- <name>hibernate.connection.url</name>
- <value>${hibernate.connection.url}</value>
- </property>
- <property>
- <name>hibernate.connection.username</name>
- <value>${hibernate.connection.username}</value>
- </property>
- <property>
- <name>hibernate.connection.password</name>
- <value>${hibernate.connection.password}</value>
- </property>
- </systemProperties>
- </configuration>
- </plugin>
- <plugin>
- <groupId>org.codehaus.mojo</groupId>
- <artifactId>buildnumber-maven-plugin</artifactId>
- <version>1.0-beta-3</version>
- <executions>
- <execution>
- <!--<phase>deploy</phase>-->
- <goals>
- <goal>create</goal>
- </goals>
- </execution>
- </executions>
- <configuration>
- <doCheck>false</doCheck>
- <!-- Only create the build number if there are no local modifications -->
- <doUpdate>false</doUpdate>
- <!-- automatically update the local svn copy -->
- </configuration>
- </plugin>
- <plugin>
- <groupId>org.apache.maven.plugins</groupId>
- <artifactId>maven-site-plugin</artifactId>
- <version>2.1.1</version>
- <configuration>
- <locales>en</locales>
- </configuration>
- </plugin>
- <plugin>
- <groupId>org.apache.maven.plugins</groupId>
- <artifactId>maven-source-plugin</artifactId>
- <version>2.1.2</version>
- <executions>
- <execution>
- <id>attach-sources</id>
- <phase>verify</phase>
- <goals>
- <goal>jar</goal>
- </goals>
- </execution>
- </executions>
- </plugin>
- <plugin>
- <groupId>org.apache.maven.plugins</groupId>
- <artifactId>maven-javadoc-plugin</artifactId>
- <version>2.7</version>
- <configuration>
- <stylesheet>maven</stylesheet>
- <quiet>true</quiet>
- <detectLinks>true</detectLinks>
- <failOnError>false</failOnError>
- </configuration>
- <executions>
- <execution>
- <id>aggregate</id>
- <goals>
- <goal>aggregate</goal>
- </goals>
- <phase>site</phase>
- </execution>
- </executions>
- </plugin>
- <plugin>
- <groupId>org.apache.maven.plugins</groupId>
- <artifactId>maven-eclipse-plugin</artifactId>
- <version>2.8</version>
- <configuration>
- <downloadSources>true</downloadSources>
- <downloadJavadocs>true</downloadJavadocs>
- </configuration>
- </plugin>
- <plugin>
- <groupId>com.agilejava.docbkx</groupId>
- <artifactId>docbkx-maven-plugin</artifactId>
- <version>2.0.9</version>
- <executions>
- <execution>
- <goals>
- <goal>generate-html</goal>
- <goal>generate-pdf</goal>
- </goals>
- <phase>pre-site</phase>
- </execution>
- </executions>
- <dependencies>
- <dependency>
- <groupId>org.docbook</groupId>
- <artifactId>docbook-xml</artifactId>
- <version>4.4</version>
- <scope>runtime</scope>
- </dependency>
- </dependencies>
- <configuration>
- <includes>ReferenceDocumentation.xml</includes>
- <chunkedOutput>true</chunkedOutput>
- <htmlStylesheet>resources/css/html.css</htmlStylesheet>
- <xincludeSupported>true</xincludeSupported>
- <!--<htmlCustomization>src/docbkx/resources/xsl/html_chunk.xsl</htmlCustomization>-->
- <!-- if anyone can get the xsl-fo customization to work properly, then by all
- means use it
- <foCustomization>src/docbkx/resources/xsl/fopdf.xsl</foCustomization>
- -->
- <entities>
- <entity>
- <name>version</name>
- <value>${project.version}</value>
- </entity>
- </entities>
- <!--We want the final documentation and the required resources to end up in
+ <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
+ <unitils.version>3.3</unitils.version>
+ <hsqldb.version>1.8.0.10</hsqldb.version><!-- 1.8.0.10, 1.9.0-rc6 (manualy build only for debugging) -->
+ </properties>
+ <scm>
+ <connection>scm:svn:http://dev.e-taxonomy.eu/svn/trunk/cdmlib/</connection>
+ <developerConnection>scm:svn:http://dev.e-taxonomy.eu/svn/trunk/cdmlib/</developerConnection>
+ <url>http://dev.e-taxonomy.eu/trac/browser/trunk/cdmlib</url>
+ </scm>
+ <mailingLists>
+ <mailingList>
+ <name>dev-edit</name>
+ <subscribe>
+ https://webmail.mnhn.fr/wws/subrequest/dev-edit
+ </subscribe>
+ <unsubscribe>
+ https://webmail.mnhn.fr/wws/sigrequest/dev-edit
+ </unsubscribe>
+ <post>dev-edit@mnhn.fr</post>
+ <archive>https://webmail.mnhn.fr/wws/arc/dev-edit/</archive>
+ </mailingList>
+ <mailingList>
+ <name>cdm-edit</name>
+ <post>cdm-edit@mnhn.fr</post>
+ <subscribe>
+ https://webmail.mnhn.fr/wws/subrequest/cdm-edit
+ </subscribe>
+ <unsubscribe>
+ https://webmail.mnhn.fr/wws/sigrequest/cdm-edit
+ </unsubscribe>
+ <archive>https://webmail.mnhn.fr/wws/arc/cdm-edit/</archive>
+ </mailingList>
+ </mailingLists>
+ <licenses>
+ <license>
+ <name>Mozilla Public License Version 1.1</name>
+ <url>http://www.mozilla.org/MPL/MPL-1.1.html</url>
+ <distribution>repo</distribution>
+ </license>
+ </licenses>
+ <organization>
+ <name>EDIT</name>
+ <url>http://www.e-taxonomy.eu/</url>
+ </organization>
+ <developers>
+ <developer>
+ <!-- your SVN account id please! -->
+ <id>ben.clark</id>
+ <name>
+ Ben Clark
+ </name>
+ <email>b.clark [at] kew.org</email>
+ <organization>
+ Royal Botanic Gardens, Kew
+ </organization>
+ <organizationUrl>http://www.kew.org/computing/</organizationUrl>
+ <timezone>0</timezone>
+ <roles>
+ <role>Architect</role>
+ <role>Java Developer</role>
+ </roles>
+ <url />
+ </developer>
+ <developer>
+ <!-- your SVN account id please! -->
+ <id>n.hoffmann</id>
+ <name>
+ Niels Hoffmann
+ </name>
+ <email>n.hoffmann [at] bgbm.org</email>
+ <organization>
+ Botanic Garden Botanical Museum Berlin
+ </organization>
+ <organizationUrl>http://www.bgbm.org/BioDivInf/</organizationUrl>
+ <timezone>+1</timezone>
+ <roles>
+ <role>Java Developer</role>
+ </roles>
+ <url />
+ </developer>
+ <developer>
+ <!-- your SVN account id please! -->
+ <id>a.kohlbecker</id>
+ <name>
+ Andreas Kohlbecker
+ </name>
+ <email>a.kohlbecker [at] bgbm.org</email>
+ <organization>
+ Botanical Garden Botanical Museum Berlin
+ </organization>
+ <organizationUrl>http://www.bgbm.org/BioDivInf/</organizationUrl>
+ <timezone>+1</timezone>
+ <roles>
+ <role>Java Developer</role>
+ </roles>
+ <url />
+ </developer>
+ <developer>
+ <!-- your SVN account id please! -->
+ <id>k.luther</id>
+ <name>
+ Katja Luther
+ </name>
+ <email>k.luther [at] bgbm.org</email>
+ <organization>
+ Botanical Garden Botanical Museum Berlin
+ </organization>
+ <organizationUrl>http://www.bgbm.org/BioDivInf/</organizationUrl>
+ <timezone>+1</timezone>
+ <roles>
+ <role>Java Developer</role>
+ </roles>
+ <url />
+ </developer>
+ <developer>
+ <!-- your SVN account id please! -->
+ <id>a.mueller</id>
+ <name>
+ Andreas Müller
+ </name>
+ <email>a.mueller [at] bgbm.org</email>
+ <organization>
+ Botanical Garden Botanical Museum Berlin
+ </organization>
+ <organizationUrl>http://www.bgbm.org/BioDivInf/</organizationUrl>
+ <timezone>+1</timezone>
+ <roles>
+ <role>Architect</role>
+ <role>Java Developer</role>
+ <role>Release Manager</role>
+ </roles>
+ <url />
+ </developer>
+ <developer>
+ <!-- your SVN account id please! -->
+ <id>f.revilla</id>
+ <name>
+ Francisco Revilla
+ </name>
+ <email>f.revilla [at] bgbm.org</email>
+ <organization>
+ Botanical Garden Botanical Museum Berlin
+ </organization>
+ <organizationUrl>http://www.bgbm.org/BioDivInf/</organizationUrl>
+ <timezone>+1</timezone>
+ <roles>
+ <role>Java Developer</role>
+ </roles>
+ <url />
+ </developer>
+ </developers>
+ <!--contributors>
+ <contributor>
+ <name>Test-Contributor</name>
+ </contributor>
+ </contributors-->
+ <issueManagement>
+ <system>Trac</system>
+ <url>http://dev.e-taxonomy.eu/trac/</url>
+ </issueManagement>
+ <ciManagement>
+ <system>Hudson</system>
+ <url>http://160.45.63.201/hudson</url>
+ </ciManagement>
+ <!-- **** REPOSITORIES **** -->
+ <repositories>
+ <!-- sun repository -->
+ <repository>
+ <id>java.net</id>
+ <url>http://download.java.net/maven/1/</url>
+ </repository>
+ <!-- the cdm internal repository -->
+ <repository>
+ <id>EditRepository</id>
+ <url>http://wp5.e-taxonomy.eu/mavenrepo/</url>
+ </repository>
+ <!-- apache incubating repository -->
+ <repository>
+ <id>ApacheIncubating</id>
+ <url>http://people.apache.org/repo/m2-incubating-repository/</url>
+ </repository>
+ <!-- Neccessary for hibernate-envers -->
+ <repository>
+ <releases>
+ <enabled>true</enabled>
+ <updatePolicy>always</updatePolicy>
+ <checksumPolicy>warn</checksumPolicy>
+ </releases>
+ <snapshots>
+ <enabled>false</enabled>
+ <updatePolicy>never</updatePolicy>
+ <checksumPolicy>fail</checksumPolicy>
+ </snapshots>
+ <id>jboss-repository</id>
+ <name>JBoss Repository</name>
+ <url>http://repository.jboss.com</url>
+ </repository>
+ <!-- codehaus mule repository needed for yourkit -->
+ <repository>
+ <id>CodehausMuleRepository</id>
+ <url>http://dist.codehaus.org/mule/dependencies/maven2/</url>
+ </repository>
+ <!-- current spring source repositories -->
+ <repository>
+ <id>SpringSource Enterprise Bundle Repository - External Bundle Milestones</id>
+ <url>http://repository.springsource.com/maven/bundles/milestone</url>
+ </repository>
+ <repository>
+ <id>SpringSource Enterprise Bundle Repository - SpringSource Bundle Releases</id>
+ <url>http://repository.springsource.com/maven/bundles/release</url>
+ </repository>
+ <repository>
+ <id>SpringSource Enterprise Bundle Repository - External Bundle Releases</id>
+ <url>http://repository.springsource.com/maven/bundles/external</url>
+ </repository>
+ </repositories>
+ <!-- **** PLUGINS **** -->
+ <build>
+ <plugins>
+ <plugin>
+ <artifactId>maven-compiler-plugin</artifactId>
+ <configuration>
+ <source>1.6</source>
+ <target>1.6</target>
+ </configuration>
+ </plugin>
+ <plugin>
+ <artifactId>maven-surefire-plugin</artifactId>
+ <configuration>
+ <argLine>-Xmx512M</argLine>
+ <includes>
+ <include>**/*Test.java</include>
+ </includes>
+ </configuration>
+ </plugin>
+ <plugin>
+ <groupId>org.codehaus.mojo</groupId>
+ <artifactId>buildnumber-maven-plugin</artifactId>
+ <version>1.0-beta-3</version>
+ <executions>
+ <execution>
+ <!--<phase>deploy</phase>-->
+ <goals>
+ <goal>create</goal>
+ </goals>
+ </execution>
+ </executions>
+ <configuration>
+ <doCheck>false</doCheck>
+ <!-- Only create the build number if there are no local modifications -->
+ <doUpdate>false</doUpdate>
+ <!-- automatically update the local svn copy -->
+ </configuration>
+ </plugin>
+ <plugin>
+ <groupId>org.apache.maven.plugins</groupId>
+ <artifactId>maven-site-plugin</artifactId>
+ <version>2.1.1</version>
+ <configuration>
+ <locales>en</locales>
+ </configuration>
+ </plugin>
+ <plugin>
+ <groupId>org.apache.maven.plugins</groupId>
+ <artifactId>maven-source-plugin</artifactId>
+ <version>2.1.2</version>
+ <executions>
+ <execution>
+ <id>attach-sources</id>
+ <phase>verify</phase>
+ <goals>
+ <goal>jar</goal>
+ </goals>
+ </execution>
+ </executions>
+ </plugin>
+ <plugin>
+ <groupId>org.apache.maven.plugins</groupId>
+ <artifactId>maven-javadoc-plugin</artifactId>
+ <version>2.7</version>
+ <configuration>
+ <stylesheet>maven</stylesheet>
+ <quiet>true</quiet>
+ <detectLinks>true</detectLinks>
+ <failOnError>false</failOnError>
+ </configuration>
+ <executions>
+ <execution>
+ <id>aggregate</id>
+ <goals>
+ <goal>aggregate</goal>
+ </goals>
+ <phase>site</phase>
+ </execution>
+ </executions>
+ </plugin>
+ <plugin>
+ <groupId>org.apache.maven.plugins</groupId>
+ <artifactId>maven-eclipse-plugin</artifactId>
+ <version>2.8</version>
+ <configuration>
+ <downloadSources>true</downloadSources>
+ <downloadJavadocs>true</downloadJavadocs>
+ </configuration>
+ </plugin>
+ <plugin>
+ <groupId>com.agilejava.docbkx</groupId>
+ <artifactId>docbkx-maven-plugin</artifactId>
+ <version>2.0.9</version>
+ <executions>
+ <execution>
+ <goals>
+ <goal>generate-html</goal>
+ <goal>generate-pdf</goal>
+ </goals>
+ <phase>pre-site</phase>
+ </execution>
+ </executions>
+ <dependencies>
+ <dependency>
+ <groupId>org.docbook</groupId>
+ <artifactId>docbook-xml</artifactId>
+ <version>4.4</version>
+ <scope>runtime</scope>
+ </dependency>
+ </dependencies>
+ <configuration>
+ <includes>ReferenceDocumentation.xml</includes>
+ <chunkedOutput>true</chunkedOutput>
+ <htmlStylesheet>resources/css/html.css</htmlStylesheet>
+ <xincludeSupported>true</xincludeSupported>
+ <!--<htmlCustomization>src/docbkx/resources/xsl/html_chunk.xsl</htmlCustomization>-->
+ <!-- if anyone can get the xsl-fo customization to work properly, then by all
+ means use it
+ <foCustomization>src/docbkx/resources/xsl/fopdf.xsl</foCustomization>
+ -->
+ <entities>
+ <entity>
+ <name>version</name>
+ <value>${project.version}</value>
+ </entity>
+ </entities>
+ <!--We want the final documentation and the required resources to end up in
the right place-->
- <copy todir="target/site/reference">
- <fileset dir="target/docbkx">
- <include name="**/*.html" />
- <include name="**/*.pdf" />
- </fileset>
- </copy>
- <copy todir="target/site/reference/html">
- <fileset dir="src/docbkx">
- <include name="**/*.css" />
- <include name="**/*.png" />
- <include name="**/*.gif" />
- <include name="**/*.jpg" />
- </fileset>
- </copy>
- </postProcess>
- </configuration>
- </plugin>
- <groupId>org.codehaus.mojo</groupId>
-
<artifactId>wagon-maven-plugin</artifactId>
- <version>1.0-beta-3</version>
- <configuration>
- <fromDir>${project.build.directory}/docbkx/</fromDir>
- <includes>**/*</includes>
- <excludes />
- <url>scpexe://160.45.63.151</url>
- <serverId>wp5.e-taxonomy.eu</serverId>
- <toDir>var/www/wp5.e-taxonomy.eu/cdmlib/reference/${project.version}</toDir>
- </configuration>
- <executions>
- <execution>
- <id>upload-reference-documentation</id>
-
<phase>site-deploy</phase>
- <goals>
- <goal>upload</goal>
- </goals>
- </execution>
- </executions>
- </plugin>
+ <postProcess>
+ <copy todir="target/site/reference">
+ <fileset dir="target/docbkx">
+ <include name="**/*.html" />
+ <include name="**/*.pdf" />
+ </fileset>
+ </copy>
+ <copy todir="target/site/reference/html">
+ <fileset dir="src/docbkx">
+ <include name="**/*.css" />
+ <include name="**/*.png" />
+ <include name="**/*.gif" />
+ <include name="**/*.jpg" />
+ </fileset>
+ </copy>
+ </postProcess>
+ </configuration>
+ </plugin>
+ <plugin>
+ <groupId>org.codehaus.mojo</groupId>
+ <artifactId>wagon-maven-plugin</artifactId>
+ <version>1.0-beta-3</version>
+ <configuration>
+ <fromDir>${project.build.directory}/docbkx/</fromDir>
+ <includes>**/*</includes>
+ <excludes />
+ <url>scpexe://160.45.63.151</url>
+ <serverId>wp5.e-taxonomy.eu</serverId>
+ <toDir>var/www/wp5.e-taxonomy.eu/cdmlib/reference/${project.version}</toDir>
+ </configuration>
+ <executions>
+ <execution>
+ <id>upload-reference-documentation</id>
+ <phase>site-deploy</phase>
+ <goals>
+ <goal>upload</goal>
+ </goals>
+ </execution>
+ </executions>
+ </plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-release-plugin</artifactId>
<groupId>org.springframework</groupId>
<artifactId>spring-beans</artifactId>
</exclusion>
- <exclusion>
- <groupId>org.springframework</groupId>
- <artifactId>spring-context</artifactId>
- </exclusion>
- <exclusion>
- <groupId>org.springframework</groupId>
- <artifactId>spring-core</artifactId>
- </exclusion>
- <exclusion>
- <groupId>org.springframework</groupId>
- <artifactId>spring-orm</artifactId>
- </exclusion>
- <exclusion>
- <groupId>org.springframework</groupId>
- <artifactId>spring-aop</artifactId>
- </exclusion>
- <exclusion>
- <groupId>org.springframework</groupId>
- <artifactId>spring-support</artifactId>
- </exclusion>
- </exclusions>
- </dependency>
- <dependency>
- <groupId>org.springframework.security</groupId>
- <artifactId>spring-security-context</artifactId>
- <version>3.0.5.RELEASE</version>
- </dependency>
- <!-- ******* SERVLET/JSP/JSF ******* -->
- <dependency>
- <groupId>javax.servlet</groupId>
- <artifactId>servlet-api</artifactId>
- <version>2.5</version>
- </dependency>
- <!-- ******* DATABASES DRIVER ******* -->
- <dependency>
- <!-- SQL Server and Sybase -->
- <groupId>net.sourceforge.jtds</groupId>
- <artifactId>jtds</artifactId>
- <version>1.2.2</version>
- </dependency>
- <dependency>
- <groupId>mysql</groupId>
- <artifactId>mysql-connector-java</artifactId>
- <version>5.0.5</version>
- </dependency>
- <dependency>
- <groupId>postgresql</groupId>
- <artifactId>postgresql</artifactId>
- <version>8.2-504.jdbc4</version>
- </dependency>
- <dependency>
- <groupId>hsqldb</groupId>
- <artifactId>hsqldb</artifactId>
- <version>1.8.0.7</version>
- </dependency>
- <!--for sqlserver2008 and sqlserver2005-->
- <dependency>
- <groupId>com.microsoft.sqlserver</groupId>
- <artifactId>jdbc4</artifactId>
- <version>2.0</version>
- </dependency>
- <!-- use SQL Server 2005 driver instead (com.microsoft.sqlserver/jdbc)
- <dependency>
- <groupId>com.microsoft.jdbcdriver</groupId>
- <artifactId>mssqlserver</artifactId>
- <version>2000.3</version>
- </dependency>
- <dependency>
- <groupId>com.microsoft.jdbcdriver</groupId>
- <artifactId>msutil</artifactId>
- <version>2000.3</version>
- </dependency>
- <dependency>
- <groupId>com.microsoft.jdbcdriver</groupId>
- <artifactId>msbase</artifactId>
- <version>2000.3</version>
- </dependency>
+ </exclusions>
+ </dependency>
+ <dependency>
+ <groupId>org.unitils</groupId>
+ <artifactId>unitils-easymock</artifactId>
+ <version>${unitils.version}</version>
+ <scope>test</scope>
+ </dependency>
+ <dependency>
+ <groupId>org.unitils</groupId>
+ <artifactId>unitils-mock</artifactId>
+ <version>${unitils.version}</version>
+ <scope>test</scope>
+ </dependency>
+ <dependency>
+ <groupId>org.unitils</groupId>
+ <artifactId>unitils-inject</artifactId>
+ <version>${unitils.version}</version>
+ <scope>test</scope>
+ </dependency>
+ <dependency>
+ <groupId>org.unitils</groupId>
+ <artifactId>unitils-orm</artifactId>
+ <version>${unitils.version}</version>
+ <scope>test</scope>
+ <exclusions>
+ <exclusion>
+ <groupId>org.springframework</groupId>
+ <artifactId>spring-context</artifactId>
+ </exclusion>
+ <exclusion>
+ <groupId>org.springframework</groupId>
+ <artifactId>spring-orm</artifactId>
+ </exclusion>
+ </exclusions>
+ </dependency>
+ <dependency>
+ <groupId>org.unitils</groupId>
+ <artifactId>unitils-spring</artifactId>
+ <version>${unitils.version}</version>
+ <scope>test</scope>
+ <exclusions>
+ <exclusion>
+ <groupId>org.springframework</groupId>
+ <artifactId>spring-core</artifactId>
+ </exclusion>
+ <exclusion>
+ <groupId>org.springframework</groupId>
+ <artifactId>spring-context</artifactId>
+ </exclusion>
+ <exclusion>
+ <groupId>org.springframework</groupId>
+ <artifactId>spring-beans</artifactId>
+ </exclusion>
+ <exclusion>
+ <groupId>org.springframework</groupId>
+ <artifactId>spring-test</artifactId>
+ </exclusion>
+ </exclusions>
+ </dependency>
+ <dependency>
+ <groupId>org.easymock</groupId>
+ <artifactId>easymock</artifactId>
+ <version>3.0</version>
+ <scope>test</scope>
+ </dependency>
+ <dependency>
+ <groupId>xmlunit</groupId>
+ <artifactId>xmlunit</artifactId>
+ <version>1.3</version>
+ <scope>test</scope>
+ </dependency>
+ <dependency>
+ <groupId>org.dbunit</groupId>
+ <artifactId>dbunit</artifactId>
+ <version>2.4.8</version>
+ <scope>test</scope>
+ </dependency>
+ <!-- ******* aspect ******* -->
+ <dependency>
+ <groupId>org.aspectj</groupId>
+ <artifactId>aspectjrt</artifactId>
+ <version>1.6.3</version>
+ </dependency>
+ <dependency>
+ <groupId>org.aspectj</groupId>
+ <artifactId>aspectjweaver</artifactId>
+ <version>1.6.3</version>
+ </dependency>
+ <!-- ******* VARIOUS ******* -->
+ <dependency>
+ <groupId>log4j</groupId>
+ <artifactId>log4j</artifactId>
+ <version>1.2.15</version>
+ </dependency>
+ <dependency>
+ <groupId>javax.annotation</groupId>
+ <artifactId>jsr250-api</artifactId>
+ <version>1.0</version>
+ </dependency>
+ <dependency>
+ <groupId>net.sf.opencsv</groupId>
+ <artifactId>opencsv</artifactId>
+ <version>1.8</version>
+ </dependency>
+ <dependency>
+ <groupId>org.eclipse</groupId>
+ <artifactId>osgi</artifactId>
+ <version>3.6.0</version>
+ </dependency>
+ <dependency>
+ <groupId>cglib</groupId>
+ <artifactId>cglib</artifactId>
+ <version>2.1_3</version>
+ </dependency>
+ <dependency>
+ <groupId>cglib</groupId>
+ <artifactId>cglib-nodep</artifactId>
+ <version>2.1_3</version>
+ </dependency>
+ <dependency>
+ <groupId>commons-lang</groupId>
+ <artifactId>commons-lang</artifactId>
+ <version>2.2</version>
+ </dependency>
+ <dependency>
+ <groupId>commons-collections</groupId>
+ <artifactId>commons-collections</artifactId>
+ <version>3.2</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.httpcomponents</groupId>
+ <artifactId>httpclient</artifactId>
+ <version>4.0.3</version>
+ </dependency>
+ <dependency>
+ <groupId>commons-io</groupId>
+ <artifactId>commons-io</artifactId>
+ <version>1.4</version>
+ </dependency>
+ <dependency>
+ <groupId>net.sf.ezmorph</groupId>
+ <artifactId>ezmorph</artifactId>
+ <version>1.0.4</version>
+ </dependency>
+ <dependency>
+ <groupId>commons-beanutils</groupId>
+ <artifactId>commons-beanutils</artifactId>
+ <version>1.7.0</version>
+ </dependency>
+ <dependency>
+ <groupId>sojo</groupId>
+ <artifactId>sojo-optional</artifactId>
+ <version>0.5.0</version>
+ </dependency>
+ <dependency>
+ <groupId>net.sf.json-lib</groupId>
+ <artifactId>json-lib</artifactId>
+ <version>2.2.3</version>
+ </dependency>
+ <dependency>
+ <groupId>org.devlib.schmidt</groupId>
+ <artifactId>imageinfo</artifactId>
+ <version>1.7</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.poi</groupId>
+ <artifactId>poi</artifactId>
+ <version>3.6</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.sanselan</groupId>
+ <artifactId>sanselan</artifactId>
+ <version>0.97-incubator</version>
+ </dependency>
+ <!-- joda-time -->
+ <dependency>
+ <groupId>joda-time</groupId>
+ <artifactId>joda-time</artifactId>
+ <version>1.5</version>
+ </dependency>
+ <dependency>
+ <groupId>joda-time</groupId>
+ <artifactId>joda-time-hibernate</artifactId>
+ <version>1.0</version>
+ <exclusions>
+ <exclusion>
+ <artifactId>ehcache</artifactId>
+ <groupId>ehcache</groupId>
+ </exclusion>
+ <exclusion>
+ <groupId>cglib</groupId>
+ <artifactId>cglib-full</artifactId>
+ </exclusion>
+ <exclusion>
+ <groupId>org.hibernate</groupId>
+ <artifactId>hibernate</artifactId>
+ </exclusion>
+ <exclusion>
+ <groupId>hibernate</groupId>
+ <artifactId>hibernate</artifactId>
+ </exclusion>
+ </exclusions>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.lucene</groupId>
+ <artifactId>lucene-core</artifactId>
+ <version>2.4.0</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.lucene</groupId>
+ <artifactId>lucene-spellchecker</artifactId>
+ <version>2.4.0</version>
+ </dependency>
+ <dependency>
+ <groupId>org.springmodules</groupId>
+ <artifactId>spring-modules-lucene</artifactId>
+ <version>0.8a</version>
+ <exclusions>
+ <exclusion>
+ <groupId>org.apache</groupId>
+ <artifactId>poi</artifactId>
+ </exclusion>
+ <exclusion>
+ <groupId>org.apache</groupId>
+ <artifactId>poi-scratchpad</artifactId>
+ </exclusion>
+ <exclusion>
+ <groupId>org.springframework</groupId>
+ <artifactId>spring-dao</artifactId>
+ </exclusion>
+ <exclusion>
+ <groupId>org.springframework</groupId>
+ <artifactId>spring-jca</artifactId>
+ </exclusion>
+ <exclusion>
+ <groupId>org.springframework</groupId>
+ <artifactId>spring-support</artifactId>
+ </exclusion>
+ <exclusion>
+ <groupId>org.springframework</groupId>
+ <artifactId>spring-beans</artifactId>
+ </exclusion>
+ <exclusion>
+ <groupId>org.springframework</groupId>
+ <artifactId>spring-aop</artifactId>
+ </exclusion>
+ <exclusion>
+ <groupId>org.springframework</groupId>
+ <artifactId>spring-context</artifactId>
+ </exclusion>
+ <exclusion>
+ <groupId>org.springframework</groupId>
+ <artifactId>spring-core</artifactId>
+ </exclusion>
+ <exclusion>
+ <groupId>org.springframework</groupId>
+ <artifactId>spring-jdbc</artifactId>
+ </exclusion>
+ </exclusions>
+ </dependency>
+ <dependency>
+ <groupId>com.ibm.lsid</groupId>
+ <artifactId>lsid-client</artifactId>
+ <version>1.1.2</version>
+ </dependency>
+ <dependency>
+ <groupId>com.ibm.lsid</groupId>
+ <artifactId>lsid-server</artifactId>
+ <version>1.1.2</version>
+ </dependency>
+ <dependency>
+ <groupId>wsdl4j</groupId>
+ <artifactId>wsdl4j</artifactId>
+ <version>1.6.1</version>
+ </dependency>
+ <dependency>
+ <groupId>net.sf.dozer</groupId>
+ <artifactId>dozer</artifactId>
+ <version>5.3.0</version>
+ </dependency>
+ <!-- ******* XML ******* -->
+ <dependency>
+ <groupId>xml-apis</groupId>
+ <artifactId>xml-apis</artifactId>
+ <version>2.0.2</version>
+ </dependency>
+ <dependency>
+ <groupId>xerces</groupId>
+ <artifactId>xercesImpl</artifactId>
+ <version>2.7.1</version>
+ </dependency>
+ <dependency>
+ <groupId>jaxen</groupId>
+ <artifactId>jaxen</artifactId>
+ <version>1.1</version>
+ </dependency>
+ <dependency>
+ <groupId>jdom</groupId>
+ <artifactId>jdom</artifactId>
+ <version>1.0</version>
+ </dependency>
+ <dependency>
+ <groupId>com.thoughtworks.xstream</groupId>
+ <artifactId>xstream</artifactId>
+ <version>1.3.1</version>
+ </dependency>
+ <dependency>
+ <groupId>xpp3</groupId>
+ <artifactId>xpp3</artifactId>
+ <version>1.1.3.3</version>
+ </dependency>
+ <dependency>
+ <groupId>stax</groupId>
+ <artifactId>stax</artifactId>
+ <version>1.2.0</version>
+ </dependency>
+ <!-- ******* HIBERNATE / EJB3 ******* -->
+ <dependency>
+ <groupId>javax.persistence</groupId>
+ <artifactId>persistence-api</artifactId>
+ <version>1.0</version>
+ </dependency>
- <dependency>
++ <dependency>
+ <groupId>org.hibernate</groupId>
+ <artifactId>hibernate-annotations</artifactId>
- <version>3.4.0-SNAPSHOT</version>
++ <version>${hibernate.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.hibernate</groupId>
+ <artifactId>hibernate-commons-annotations</artifactId>
- <version>3.4.0-SNAPSHOT</version>
++ <version>${hibernate.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.hibernate</groupId>
+ <artifactId>hibernate-core</artifactId>
- <version>3.4.0-SNAPSHOT</version>
++ <version>${hibernate.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.hibernate</groupId>
+ <artifactId>hibernate-search</artifactId>
+ <version>3.1.0.GA</version>
+ </dependency>
+ <dependency>
+ <groupId>org.hibernate</groupId>
+ <artifactId>hibernate-entitymanager</artifactId>
- <version>3.4.0-SNAPSHOT</version>
++ <version>${hibernate.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.hibernate</groupId>
+ <artifactId>hibernate-envers</artifactId>
- <version>3.4.0-SNAPSHOT</version>
++ <version>${hibernate.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>javassist</groupId>
+ <artifactId>javassist</artifactId>
+ <version>3.4.GA</version>
+ </dependency>
+ <dependency>
+ <groupId>org.hibernate</groupId>
+ <artifactId>hibernate-cglib-repack</artifactId>
+ <version>2.1_3</version>
+ </dependency>
+ <dependency>
+ <groupId>org.hibernate</groupId>
+ <artifactId>hibernate-ehcache</artifactId>
- <version>3.4.0-SNAPSHOT</version>
++ <version>${hibernate.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.hibernate</groupId>
+ <artifactId>hibernate-parent</artifactId>
- <version>3.4.0-SNAPSHOT</version>
++ <version>${hibernate.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.hibernate</groupId>
+ <artifactId>hibernate-c3p0</artifactId>
- <version>3.4.0-SNAPSHOT</version>
++ <version>${hibernate.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>javax.servlet</groupId>
+ <artifactId>servlet-api</artifactId>
+ <version>2.5</version>
+ </dependency>
+ <!-- ******* SPRING ******* -->
+ <dependency>
+ <groupId>org.springframework</groupId>
+ <artifactId>org.springframework.core</artifactId>
+ <version>${spring.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.springframework</groupId>
+ <artifactId>org.springframework.context</artifactId>
+ <version>${spring.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.springframework</groupId>
+ <artifactId>org.springframework.beans</artifactId>
+ <version>${spring.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.springframework</groupId>
+ <artifactId>org.springframework.orm</artifactId>
+ <version>${spring.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.springframework</groupId>
+ <artifactId>org.springframework.jdbc</artifactId>
+ <version>${spring.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.springframework</groupId>
+ <artifactId>org.springframework.test</artifactId>
+ <version>${spring.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.springframework</groupId>
+ <artifactId>org.springframework.web.servlet</artifactId>
+ <version>${spring.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.springframework</groupId>
+ <artifactId>org.springframework.web</artifactId>
+ <version>${spring.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.springframework</groupId>
+ <artifactId>org.springframework.aop</artifactId>
+ <version>${spring.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.springframework</groupId>
+ <artifactId>org.springframework.aspects</artifactId>
+ <version>${spring.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.springframework</groupId>
+ <artifactId>org.springframework.expression</artifactId>
+ <version>${spring.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.springframework</groupId>
+ <artifactId>org.springframework.agent</artifactId>
+ <version>${spring.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.springframework</groupId>
+ <artifactId>org.springframework.context.support</artifactId>
+ <version>${spring.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.springframework</groupId>
+ <artifactId>org.springframework.oxm</artifactId>
+ <version>${spring.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.springframework</groupId>
+ <artifactId>org.springframework.context.support</artifactId>
+ <version>${spring.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.springframework.security</groupId>
+ <artifactId>spring-security-core</artifactId>
+ <version>3.0.5.RELEASE</version>
+ <exclusions>
+ <exclusion>
+ <groupId>org.springframework</groupId>
+ <artifactId>spring-expression</artifactId>
+ </exclusion>
+ <exclusion>
+ <groupId>org.springframework</groupId>
+ <artifactId>spring-beans</artifactId>
+ </exclusion>
+ <exclusion>
+ <groupId>org.springframework</groupId>
+ <artifactId>spring-context</artifactId>
+ </exclusion>
+ <exclusion>
+ <groupId>org.springframework</groupId>
+ <artifactId>spring-core</artifactId>
+ </exclusion>
+ <exclusion>
+ <groupId>org.springframework</groupId>
+ <artifactId>spring-orm</artifactId>
+ </exclusion>
+ <exclusion>
+ <groupId>org.springframework</groupId>
+ <artifactId>spring-aop</artifactId>
+ </exclusion>
+ <exclusion>
+ <groupId>org.springframework</groupId>
+ <artifactId>spring-support</artifactId>
+ </exclusion>
+ </exclusions>
+ </dependency>
+ <dependency>
+ <groupId>org.springframework.security</groupId>
+ <artifactId>spring-security-context</artifactId>
+ <version>3.0.5.RELEASE</version>
+ </dependency>
+ <!-- ******* SERVLET/JSP/JSF ******* -->
+ <dependency>
+ <groupId>javax.servlet</groupId>
+ <artifactId>servlet-api</artifactId>
+ <version>2.5</version>
+ </dependency>
+ <!-- ******* DATABASES DRIVER ******* -->
+ <dependency>
+ <!-- SQL Server and Sybase -->
+ <groupId>net.sourceforge.jtds</groupId>
+ <artifactId>jtds</artifactId>
+ <version>1.2.2</version>
+ </dependency>
+ <dependency>
+ <groupId>mysql</groupId>
+ <artifactId>mysql-connector-java</artifactId>
+ <version>5.0.5</version>
+ </dependency>
+ <dependency>
+ <groupId>postgresql</groupId>
+ <artifactId>postgresql</artifactId>
+ <version>8.2-504.jdbc4</version>
+ </dependency>
+ <dependency>
+ <groupId>hsqldb</groupId>
+ <artifactId>hsqldb</artifactId>
+ <version>${hsqldb.version}</version>
+ </dependency>
+ <!--for sqlserver2008 and sqlserver2005-->
+ <dependency>
+ <groupId>com.microsoft.sqlserver</groupId>
+ <artifactId>jdbc4</artifactId>
+ <version>2.0</version>
+ </dependency>
+ <!-- use SQL Server 2005 driver instead (com.microsoft.sqlserver/jdbc)
+ <dependency>
+ <groupId>com.microsoft.jdbcdriver</groupId>
+ <artifactId>mssqlserver</artifactId>
+ <version>2000.3</version>
+ </dependency>
+ <dependency>
+ <groupId>com.microsoft.jdbcdriver</groupId>
+ <artifactId>msutil</artifactId>
+ <version>2000.3</version>
+ </dependency>
+ <dependency>
+ <groupId>com.microsoft.jdbcdriver</groupId>
+ <artifactId>msbase</artifactId>
+ <version>2000.3</version>
+ </dependency>
-->
- <dependency>
- <groupId>oracle</groupId>
- <artifactId>ojdbc14</artifactId>
- <version>10.2.0.2</version>
- </dependency>
- <dependency>
- <groupId>oracle</groupId>
- <artifactId>ojdbc14</artifactId>
- <version>9i</version>
- </dependency>
- <dependency>
- <groupId>oracle</groupId>
- <artifactId>ojdbc14</artifactId>
- <version>9.2.0.5</version>
- </dependency>
- <dependency>
- <groupId>com.h2database</groupId>
- <artifactId>h2</artifactId>
- <version>1.1.115</version>
- </dependency>
- <!-- yourkit profiler api controller (used in ..)-->
- <dependency>
- <groupId>com.yourkit</groupId>
- <artifactId>yjp-controller-api-redist</artifactId>
- <version>8.0.1</version>
- </dependency>
- <!-- For Validation -->
- <dependency>
- <groupId>javax.validation</groupId>
- <artifactId>validation-api</artifactId>
- <version>1.0.CR5</version>
- </dependency>
- <dependency>
- <groupId>org.hibernate</groupId>
- <artifactId>hibernate-validator</artifactId>
- <version>4.0.0.CR1</version>
- </dependency>
- </dependencies>
- </dependencyManagement>
+ <dependency>
+ <groupId>oracle</groupId>
+ <artifactId>ojdbc14</artifactId>
+ <version>10.2.0.2</version>
+ </dependency>
+ <dependency>
+ <groupId>oracle</groupId>
+ <artifactId>ojdbc14</artifactId>
+ <version>9i</version>
+ </dependency>
+ <dependency>
+ <groupId>oracle</groupId>
+ <artifactId>ojdbc14</artifactId>
+ <version>9.2.0.5</version>
+ </dependency>
+ <dependency>
+ <groupId>com.h2database</groupId>
+ <artifactId>h2</artifactId>
+ <version>1.1.115</version>
+ </dependency>
+ <!-- yourkit profiler api controller (used in ..)-->
+ <dependency>
+ <groupId>com.yourkit</groupId>
+ <artifactId>yjp-controller-api-redist</artifactId>
+ <version>8.0.1</version>
+ </dependency>
+ <!-- For Validation -->
+ <dependency>
+ <groupId>javax.validation</groupId>
+ <artifactId>validation-api</artifactId>
+ <version>1.0.CR5</version>
+ </dependency>
+ <dependency>
+ <groupId>org.hibernate</groupId>
+ <artifactId>hibernate-validator</artifactId>
+ <version>4.0.0.CR1</version>
+ </dependency>
+ <dependency>
+ <groupId>p6spy</groupId>
+ <artifactId>p6spy</artifactId>
+ <version>1.3</version>
+ </dependency>
+ </dependencies>
+ </dependencyManagement>
</project>
BGBM BDI Projects / cdmlib.git / commitdiff