cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/specimen/abcd206/in/Abcd206ImportConfigurator.java

   1 /**
   2  * Copyright (C) 2007 EDIT
   3  * European Distributed Institute of Taxonomy
   4  * http://www.e-taxonomy.eu
   5  *
   6  * The contents of this file are subject to the Mozilla Public License Version 1.1
   7  * See LICENSE.TXT at the top of this package for the full license terms.
   8  */
   9 package eu.etaxonomy.cdm.io.specimen.abcd206.in;
  10
  11 import java.io.InputStream;
  12
  13 import org.apache.log4j.Logger;
  14
  15 import eu.etaxonomy.cdm.common.URI;
  16 import eu.etaxonomy.cdm.common.UriUtils;
  17 import eu.etaxonomy.cdm.database.ICdmDataSource;
  18 import eu.etaxonomy.cdm.io.common.IMatchingImportConfigurator;
  19 import eu.etaxonomy.cdm.io.common.mapping.IInputTransformer;
  20 import eu.etaxonomy.cdm.io.specimen.SpecimenImportConfiguratorBase;
  21 import eu.etaxonomy.cdm.model.reference.Reference;
  22
  23 /**
  24  * @author p.kelbert
  25  * @since 20.10.2008
  26  */
  27 public class Abcd206ImportConfigurator
  28         extends SpecimenImportConfiguratorBase<Abcd206ImportConfigurator, Abcd206ImportState, InputStream>
  29         implements IMatchingImportConfigurator {
  30
  31     private static final long serialVersionUID = -7204105522522645681L;
  32
  33     @SuppressWarnings("unused")
  34     private static final Logger logger = Logger.getLogger(Abcd206ImportConfigurator.class);
  35
  36
  37     //TODO
  38     private static IInputTransformer defaultTransformer = null;
  39
  40     private URI sourceUri;
  41
  42     private boolean getSiblings = false;
  43
  44     private URI dnaSoure; // = URI.create("https://ww3.bgbm.org/biocase/pywrapper.cgi?dsa=DNA_Bank");
  45
  46     @Override
  47     @SuppressWarnings("unchecked")
  48     protected void makeIoClassList(){
  49         System.out.println("makeIOClassList");
  50         ioClassList = new Class[]{
  51                 Abcd206Import.class,
  52         };
  53     }
  54
  55     public static Abcd206ImportConfigurator NewInstance(URI uri,ICdmDataSource destination){
  56         return new Abcd206ImportConfigurator(null, uri, destination, false);
  57     }
  58
  59     /**
  60      * @param uri
  61      * @param object
  62      * @param b
  63      * @return
  64      */
  65     public static Abcd206ImportConfigurator NewInstance(URI uri, ICdmDataSource destination, boolean interact) {
  66         return new Abcd206ImportConfigurator(null, uri, destination, interact);
  67     }
  68
  69     /**
  70      * @param uri
  71      * @param object
  72      * @param b
  73      * @return
  74      *//*
  75     public static Abcd206ImportConfigurator NewInstance(InputStream stream, ICdmDataSource destination, boolean interact) {
  76         return new Abcd206ImportConfigurator(stream, null, destination, interact);
  77     }
  78 */
  79
  80
  81     /**
  82      * @param berlinModelSource
  83      * @param sourceReference
  84      * @param destination
  85      */
  86     private Abcd206ImportConfigurator(InputStream stream, URI uri, ICdmDataSource destination, boolean interact) {
  87         super(defaultTransformer);
  88         if (stream != null){
  89                 setSource(stream);
  90         }else{
  91                 this.sourceUri = uri;
  92         }
  93         setDestination(destination);
  94         setSourceReferenceTitle("ABCD classic");
  95         setInteractWithUser(interact);
  96     }
  97
  98
  99
 100
 101
 102     @Override
 103     public Abcd206ImportState getNewState() {
 104         return new Abcd206ImportState(this);
 105     }
 106
 107
 108     @Override
 109     public InputStream getSource(){
 110         if (super.getSource() != null){
 111                 return super.getSource();
 112         }else if (this.sourceUri != null){
 113                 try {
 114                                 InputStream is = UriUtils.getInputStream(sourceUri);
 115                                 setSource(is);
 116                                 return is;
 117                         } catch (Exception e) {
 118                                 throw new RuntimeException(e);
 119                         }
 120         }else{
 121                 return null;
 122         }
 123     }
 124
 125
 126
 127     public URI getSourceUri(){
 128         return this.sourceUri;
 129     }
 130
 131     public void setSourceUri(URI sourceUri) {
 132         this.sourceUri = sourceUri;
 133         super.setSource(null);
 134     }
 135
 136
 137
 138
 139     public URI getDnaSoure() {
 140         return dnaSoure;
 141     }
 142
 143     public void setDnaSoure(URI dnaSoure) {
 144         this.dnaSoure = dnaSoure;
 145     }
 146
 147     @Override
 148     public Reference getSourceReference() {
 149         //TODO
 150         return sourceReference;
 151     }
 152
 153     /**
 154      * @return the getSiblings
 155      */
 156     public boolean isGetSiblings() {
 157         return getSiblings;
 158     }
 159
 160     /**
 161      * @param getSiblings the getSiblings to set
 162      */
 163     public void setGetSiblings(boolean getSiblings) {
 164         this.getSiblings = getSiblings;
 165     }
 166
 167
 168
 169
 170 @Override
 171 public String toString(){
 172
 173     StringBuffer result = new StringBuffer();
 174     //the preference value is build like this:
 175       //<section1>:true;<section2>:false....
 176
 177       result.append("ignoreImportOfExistingSpecimen");
 178       result.append(":");
 179       result.append(this.isIgnoreImportOfExistingSpecimen());
 180       result.append(";");
 181       result.append("addIndividualsAssociationsSuchAsSpecimenAndObservations");
 182       result.append(":");
 183       result.append(this.isAddIndividualsAssociationsSuchAsSpecimenAndObservations());
 184       result.append(";");
 185       result.append("reuseExistingTaxaWhenPossible");
 186       result.append(":");
 187       result.append(this.isReuseExistingTaxaWhenPossible());
 188       result.append(";");
 189       result.append("ignoreAuthorship");
 190       result.append(":");
 191       result.append(this.isIgnoreAuthorship());
 192       result.append(";");
 193       result.append("addMediaAsMediaSpecimen");
 194       result.append(":");
 195       result.append(this.isAddMediaAsMediaSpecimen());
 196       result.append(";");
 197       result.append("reuseExistingMetaData");
 198       result.append(":");
 199       result.append(this.isReuseExistingMetaData());
 200       result.append(";");
 201       result.append("reuseExistingDescriptiveGroups");
 202       result.append(":");
 203       result.append(this.isReuseExistingDescriptiveGroups());
 204       result.append(";");
 205       result.append("allowReuseOtherClassifications");
 206       result.append(":");
 207       result.append(this.isAllowReuseOtherClassifications());
 208       result.append(";");
 209       result.append("deduplicateReferences");
 210       result.append(":");
 211       result.append(this.isDeduplicateReferences());
 212       result.append(";");
 213       result.append("deduplicateClassifications");
 214       result.append(":");
 215       result.append(this.isDeduplicateClassifications());
 216       result.append(";");
 217       result.append("moveNewTaxaToDefaultClassification");
 218       result.append(":");
 219       result.append(this.isMoveNewTaxaToDefaultClassification());
 220       result.append(";");
 221       result.append("getSiblings");
 222       result.append(":");
 223       result.append(this.isGetSiblings());
 224       result.append(";");
 225       result.append("removeCountryFromLocalityText");
 226       result.append(":");
 227       result.append(this.isRemoveCountryFromLocalityText());
 228       result.append(";");
 229
 230       result.append("mapUnitIdToCatalogNumber");
 231       result.append(":");
 232       result.append(this.isMapUnitIdToCatalogNumber());
 233       result.append(";");
 234       result.append("mapUnitIdToAccessionNumber");
 235       result.append(":");
 236       result.append(this.isMapUnitIdToAccessionNumber());
 237       result.append(";");
 238       result.append("mapUnitIdToBarcode");
 239       result.append(":");
 240       result.append(this.isMapUnitIdToBarcode());
 241       result.append(";");
 242
 243       result.append("overwriteExistingSpecimens");
 244       result.append(":");
 245       result.append(this.isOverwriteExistingSpecimens());
 246       result.append(";");
 247       result.append("nomenclaturalCode");
 248       result.append(":");
 249       result.append(this.getNomenclaturalCode() != null ? this.getNomenclaturalCode().getKey():"");
 250       result.append(";");
 251       result.append("dnaSource");
 252       result.append(":");
 253       result.append(this.getDnaSoure() != null ? this.getDnaSoure().toString():"");
 254       result.append(";");
 255       result.append("classificationUUID");
 256       result.append(":");
 257       result.append(this.getClassificationUuid() != null ? this.getClassificationUuid().toString():"");
 258       result.append(";");
 259       result.append("classificationName");
 260       result.append(":");
 261       result.append(this.getClassificationName() != null ? this.getClassificationName():"");
 262       result.append(";");
 263
 264
 265     return result.toString();
 266
 267 }
 268
 269
 270
 271
 272
 273
 274
 275
 276
 277
 278
 279 }