cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/BerlinModelTransformer.java

   1 package eu.etaxonomy.cdm.io.berlinModel;
   2
   3 import org.apache.log4j.Logger;
   4
   5 import eu.etaxonomy.cdm.model.name.Rank;
   6 import eu.etaxonomy.cdm.model.taxon.Synonym;
   7 import eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType;
   8 import eu.etaxonomy.cdm.model.taxon.Taxon;
   9 import eu.etaxonomy.cdm.strategy.exceptions.UnknownCdmTypeException;
  10
  11 public final class BerlinModelTransformer {
  12         private static final Logger logger = Logger.getLogger(BerlinModelTransformer.class);
  13
  14         //REFERENCES
  15         public static int REF_ARTICLE = 1;
  16         public static int REF_PART_OF_OTHER_TITLE = 2;
  17         public static int REF_BOOK = 3;
  18         public static int REF_DATABASE = 4;
  19         public static int REF_INFORMAL = 5;
  20         public static int REF_NOT_APPLICABLE = 6;
  21         public static int REF_WEBSITE = 7;
  22         public static int REF_CD = 8;
  23         public static int REF_JOURNAL = 9;
  24         public static int REF_UNKNOWN = 10;
  25
  26
  27         //NameStatus
  28         public static int NAME_ST_NOM_INVAL = 1;
  29         public static int NAME_ST_NOM_ILLEG = 2;
  30         public static int NAME_ST_NOM_NUD = 3;
  31         public static int NAME_ST_NOM_REJ = 4;
  32         public static int NAME_ST_NOM_REJ_PROP = 5;
  33         public static int NAME_ST_NOM_UTIQUE_REJ = 6;
  34         public static int NAME_ST_NOM_UTIQUE_REJ_PROP = 7;
  35         public static int NAME_ST_NOM_CONS = 8;
  36         public static int NAME_ST_NOM_CONS_PROP = 9;
  37         public static int NAME_ST_ORTH_CONS = 10;
  38         public static int NAME_ST_ORTH_CONS_PROP = 11;
  39         public static int NAME_ST_NOM_SUPERFL = 12;
  40         public static int NAME_ST_NOM_AMBIG = 13;
  41         public static int NAME_ST_NOM_PROVIS = 14;
  42         public static int NAME_ST_NOM_DUB = 15;
  43         public static int NAME_ST_NOM_NOV = 16;
  44         public static int NAME_ST_NOM_CONFUS = 17;
  45         public static int NAME_ST_NOM_ALTERN = 18;
  46         public static int NAME_ST_COMB_INVAL = 19;
  47
  48
  49         //NameRelationShip
  50         public static int NAME_REL_IS_BASIONYM_FOR = 1;
  51         public static int NAME_REL_IS_LATER_HOMONYM_OF = 2;
  52         public static int NAME_REL_IS_REPLACED_SYNONYM_FOR = 3;
  53         public static int NAME_REL_IS_VALIDATION_OF = 4;
  54         public static int NAME_REL_IS_LATER_VALIDATION_OF = 5;
  55         public static int NAME_REL_IS_TYPE_OF = 6;
  56         public static int NAME_REL_IS_CONSERVED_TYPE_OF =7;
  57         public static int NAME_REL_IS_REJECTED_TYPE_OF = 8;
  58         public static int NAME_REL_IS_FIRST_PARENT_OF = 9;
  59         public static int NAME_REL_IS_SECOND_PARENT_OF = 10;
  60         public static int NAME_REL_IS_FEMALE_PARENT_OF = 11;
  61         public static int NAME_REL_IS_MALE_PARENT_OF = 12;
  62         public static int NAME_REL_IS_CONSERVED_AGAINST =13;
  63         public static int NAME_REL_IS_REJECTED_IN_FAVOUR_OF = 14;
  64         public static int NAME_REL_IS_TREATED_AS_LATER_HOMONYM_OF = 15;
  65         public static int NAME_REL_IS_ORTHOGRAPHIC_VARIANT_OF = 16;
  66         public static int NAME_REL_HAS_SAME_TYPE_AS = 18;
  67         public static int NAME_REL_IS_LECTOTYPE_OF = 61;
  68         public static int NAME_REL_TYPE_NOT_DESIGNATED = 62;
  69
  70
  71         //TaxonRelationShip
  72         public static int TAX_REL_IS_INCLUDED_IN = 1;
  73         public static int TAX_REL_IS_SYNONYM_OF = 2;
  74         public static int TAX_REL_IS_MISAPPLIED_NAME_OF = 3;
  75         public static int TAX_REL_IS_HOMOTYPIC_SYNONYM_OF = 6;
  76         public static int TAX_REL_IS_HETEROTYPIC_SYNONYM_OF = 7;
  77
  78
  79         //TaxonStatus
  80         public static int T_STATUS_ACCEPTED = 1;
  81         public static int T_STATUS_SYNONYM = 2;
  82         public static int T_STATUS_PARTIAL_SYN = 3;
  83         public static int T_STATUS_PRO_PARTE_SYN = 4;
  84         public static int T_STATUS_UNRESOLVED = 5;
  85         public static int T_STATUS_ORPHANED = 6;
  86
  87
  88         //Facts
  89         public static int FACT_DESCRIPTION = 1;
  90         public static int FACT_GROWTH_FORM = 2;
  91         public static int FACT_HARDINESS = 3;
  92         public static int FACT_ECOLOGY = 4;
  93         public static int FACT_PHENOLOGY = 5;
  94         public static int FACT_KARYOLOGY = 6;
  95         public static int FACT_ILLUSTRATION = 7;
  96         public static int FACT_IDENTIFICATION = 8;
  97         public static int FACT_OBSERVATION = 9;
  98         public static int FACT_DISTIRBUTION_EM = 10;
  99         public static int FACT_DISTIRBUTION_WORLD = 11;
 100
 101         /** Creates an cdm-Rank by the berlinModel rankId
 102          * @param doubt doubtfulFalg
 103          * @return "true" if doubt = "a"
 104          */
 105         public static Rank rankId2Rank (int rankId) throws UnknownCdmTypeException{
 106                 switch (rankId){
 107                         case 1: return Rank.KINGDOM();
 108                         case 3: return Rank.SUBKINGDOM();
 109                         case 5: return Rank.PHYLUM();
 110                         case 7: return Rank.SUBPHYLUM();
 111                         case 8: return Rank.DIVISION();
 112                         case 9: return Rank.SUBDIVISION();
 113                         case 10: return Rank.CLASS();
 114                         case 13: return Rank.SUBCLASS();
 115                         case 16: return Rank.SUPERORDER();
 116                         case 18: return Rank.ORDER();
 117                         case 19: return Rank.SUBORDER();
 118                         case 20: return Rank.FAMILY();
 119                         case 25: return Rank.SUBFAMILY();
 120                         case 30: return Rank.TRIBE();
 121                         case 35: return Rank.SUBTRIBE();
 122                         case 40: return Rank.GENUS();
 123                         case 42: return Rank.SUBGENUS();
 124                         case 45: return Rank.SECTION();
 125                         case 47: return Rank.SUBSECTION();
 126                         case 50: return Rank.SERIES();
 127                         case 52: return Rank.SUBSERIES();
 128                         case 58: return Rank.SPECIESAGGREGATE();
 129                         //FIXME
 130                         //case 59: return Rank.SPECIESAGGREGATE();
 131                         case 60: return Rank.SPECIES();
 132                         case 65: return Rank.SUBSPECIES();
 133                         case 68: return Rank.CONVAR();
 134                         case 70: return Rank.VARIETY();
 135                         case 73: return Rank.SUBVARIETY();
 136                         case 80: return Rank.FORM();
 137                         case 82: return Rank.SUBFORM();
 138                         case 84: return Rank.SPECIALFORM();
 139                         case 98: return Rank.INFRAGENERICTAXON();
 140                         case 99: return Rank.INFRASPECIFICTAXON();
 141                         default: {
 142                                 throw new UnknownCdmTypeException("Unknown Rank id" + Integer.valueOf(rankId).toString());
 143                         }
 144                 }
 145         }
 146
 147
 148 }