cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/molecular/DnaSample.java

   1 /**
   2 * Copyright (C) 2007 EDIT
   3 * European Distributed Institute of Taxonomy
   4 * http://www.e-taxonomy.eu
   5 *
   6 * The contents of this file are subject to the Mozilla Public License Version 1.1
   7 * See LICENSE.TXT at the top of this package for the full license terms.
   8 */
   9
  10 package eu.etaxonomy.cdm.model.molecular;
  11
  12
  13 import eu.etaxonomy.cdm.model.occurrence.Collection;
  14 import eu.etaxonomy.cdm.model.occurrence.Specimen;
  15 import eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase;
  16 import org.apache.log4j.Logger;
  17
  18 import java.util.*;
  19
  20 import javax.persistence.*;
  21
  22 /**
  23  * @author m.doering
  24  * @version 1.0
  25  * @created 08-Nov-2007 13:06:22
  26  */
  27 @Entity
  28 public class DnaSample extends Specimen {
  29         static Logger logger = Logger.getLogger(DnaSample.class);
  30         private String bankNumber;
  31         private Set<Sequence> sequences = new HashSet();
  32
  33         @OneToMany
  34         public Set<Sequence> getSequences() {
  35                 return sequences;
  36         }
  37         protected void setSequences(Set<Sequence> sequences) {
  38                 this.sequences = sequences;
  39         }
  40         public void addSequences(Sequence sequence) {
  41                 this.sequences.add(sequence);
  42         }
  43         public void removeSequences(Sequence sequence) {
  44                 this.sequences.remove(sequence);
  45         }
  46
  47
  48         @Transient
  49         public Collection getStoredAt(){
  50                 return this.getCollection();
  51         }
  52         public void setStoredAt(Collection storedAt){
  53                 this.setCollection(storedAt);
  54         }
  55
  56         @Transient
  57         public Set<SpecimenOrObservationBase> getExtractedFrom(){
  58                 return getOriginals();
  59         }
  60
  61         @Transient
  62         public String getBankNumber(){
  63                 return this.getCatalogNumber();
  64         }
  65         public void setBankNumber(String bankNumber){
  66                 this.setCatalogNumber(bankNumber);
  67         }
  68
  69 }