app-import/src/main/java/eu/etaxonomy/cdm/app/wp6/palmae/PalmaeActivator.java

   1 /**
   2 * Copyright (C) 2007 EDIT
   3 * European Distributed Institute of Taxonomy
   4 * http://www.e-taxonomy.eu
   5 *
   6 * The contents of this file are subject to the Mozilla Public License Version 1.1
   7 * See LICENSE.TXT at the top of this package for the full license terms.
   8 */
   9
  10 package eu.etaxonomy.cdm.app.wp6.palmae;
  11
  12 import java.util.UUID;
  13
  14 import org.apache.log4j.Logger;
  15
  16 import eu.etaxonomy.cdm.api.application.CdmApplicationController;
  17 import eu.etaxonomy.cdm.app.common.CdmDestinations;
  18 import eu.etaxonomy.cdm.app.images.ImageImportConfigurator;
  19 import eu.etaxonomy.cdm.app.tcs.TcsSources;
  20 import eu.etaxonomy.cdm.database.DbSchemaValidation;
  21 import eu.etaxonomy.cdm.database.ICdmDataSource;
  22 import eu.etaxonomy.cdm.io.PalmaeImageImport;
  23 import eu.etaxonomy.cdm.io.PalmaeProtologueImport;
  24 import eu.etaxonomy.cdm.io.common.CdmDefaultImport;
  25 import eu.etaxonomy.cdm.io.common.IImportConfigurator;
  26 import eu.etaxonomy.cdm.io.common.IImportConfigurator.CHECK;
  27 import eu.etaxonomy.cdm.io.common.IImportConfigurator.DO_REFERENCES;
  28 import eu.etaxonomy.cdm.io.tcsrdf.TcsRdfImportConfigurator;
  29 import eu.etaxonomy.cdm.model.description.Feature;
  30 import eu.etaxonomy.cdm.model.description.FeatureNode;
  31 import eu.etaxonomy.cdm.model.description.FeatureTree;
  32
  33 /**
  34  * @author a.mueller
  35  * @created 20.06.2008
  36  * @version 1.0
  37  */
  38 public class PalmaeActivator {
  39         private static final Logger logger = Logger.getLogger(PalmaeActivator.class);
  40
  41         //database validation status (create, update, validate ...)
  42         static DbSchemaValidation hbm2dll = DbSchemaValidation.CREATE;
  43         static final String tcsSource = TcsSources.arecaceae_local();
  44         static final ICdmDataSource cdmDestination = CdmDestinations.localH2Palmae();
  45
  46         static final UUID featureTreeUuid = UUID.fromString("72ccce05-7cc8-4dab-8e47-bf3f5fd848a0");
  47
  48         static final UUID secUuid = UUID.fromString("5f32b8af-0c97-48ac-8d33-6099ed68c625");
  49         static final String sourceSecId = "palm_pub_ed_999999";
  50
  51         //should the taxonX import run as well?
  52         static final boolean includeTaxonX = true;
  53         static final boolean includeImages = true;
  54         static final boolean includeProtologue = true;
  55
  56         //check - import
  57         static final CHECK check = CHECK.IMPORT_WITHOUT_CHECK;
  58
  59         //authors
  60         static final boolean doAuthors = true;
  61         //references
  62         static final DO_REFERENCES doReferences =  DO_REFERENCES.ALL;
  63         //names
  64         static final boolean doTaxonNames = true;
  65         static final boolean doRelNames = true;
  66
  67         //taxa
  68         static final boolean doTaxa = true;
  69         static final boolean doRelTaxa = true;
  70         static final boolean doFacts = true;
  71
  72
  73
  74         private boolean doImport(){
  75                 boolean success = true;
  76                 System.out.println("Start import from Tcs("+ tcsSource.toString() + ") ...");
  77
  78                 //make BerlinModel Source
  79                 String source = tcsSource;
  80                 ICdmDataSource destination = cdmDestination;
  81
  82                 TcsRdfImportConfigurator tcsImportConfigurator = TcsRdfImportConfigurator.NewInstance(source,  destination);
  83
  84                 tcsImportConfigurator.setSecUuid(secUuid);
  85                 tcsImportConfigurator.setSourceSecId(sourceSecId);
  86
  87                 tcsImportConfigurator.setDoAuthors(doAuthors);
  88                 tcsImportConfigurator.setDoReferences(doReferences);
  89                 tcsImportConfigurator.setDoTaxonNames(doTaxonNames);
  90                 tcsImportConfigurator.setDoRelNames(doRelNames);
  91
  92                 tcsImportConfigurator.setDoTaxa(doTaxa);
  93                 tcsImportConfigurator.setDoRelTaxa(doRelTaxa);
  94                 tcsImportConfigurator.setDoFacts(doFacts);
  95
  96                 tcsImportConfigurator.setCheck(check);
  97                 tcsImportConfigurator.setDbSchemaValidation(hbm2dll);
  98
  99                 // invoke import
 100                 CdmDefaultImport<TcsRdfImportConfigurator> tcsImport = new CdmDefaultImport<TcsRdfImportConfigurator>();
 101                 //new Test().invoke(tcsImportConfigurator);
 102                 success &= tcsImport.invoke(tcsImportConfigurator);
 103
 104                 //make feature tree
 105                 logger.info("Make feature tree");
 106                 CdmApplicationController app = tcsImport.getCdmApp();
 107
 108                 FeatureTree tree = getFeatureTree();
 109                 app.getDescriptionService().saveFeatureTree(tree);
 110                 System.out.println("End import from TCS ("+ source.toString() + ")...");
 111
 112                 return success;
 113         }
 114
 115
 116         private FeatureTree getFeatureTree(){
 117
 118                 FeatureTree result = FeatureTree.NewInstance(featureTreeUuid);
 119                 FeatureNode root = result.getRoot();
 120
 121                 FeatureNode newNode;
 122                 newNode = FeatureNode.NewInstance(Feature.INTRODUCTION());
 123                 root.addChild(newNode);
 124                 newNode = FeatureNode.NewInstance(Feature.DISTRIBUTION());
 125                 root.addChild(newNode);
 126                 newNode = FeatureNode.NewInstance(Feature.BIOLOGY_ECOLOGY());
 127                 root.addChild(newNode);
 128                 newNode = FeatureNode.NewInstance(Feature.CONSERVATION());
 129                 root.addChild(newNode);
 130                 newNode = FeatureNode.NewInstance(Feature.COMMON_NAME());
 131                 root.addChild(newNode);
 132                 newNode = FeatureNode.NewInstance(Feature.ETYMOLOGY());
 133                 root.addChild(newNode);
 134                 newNode = FeatureNode.NewInstance(Feature.USES());
 135                 root.addChild(newNode);
 136                 newNode = FeatureNode.NewInstance(Feature.CULTIVATION());
 137                 root.addChild(newNode);
 138                 // "anatomy", "fossil record" "relationships"
 139                 //for future
 140                 newNode = FeatureNode.NewInstance(Feature.DISCUSSION());
 141                 root.addChild(newNode);
 142                 newNode = FeatureNode.NewInstance(Feature.DIAGNOSIS());
 143                 root.addChild(newNode);
 144                 newNode = FeatureNode.NewInstance(Feature.DESCRIPTION());
 145                 root.addChild(newNode);
 146                 newNode = FeatureNode.NewInstance(Feature.MATERIALS_EXAMINED());
 147                 root.addChild(newNode);
 148
 149                 return result;
 150
 151
 152         }
 153
 154         /**
 155          * @param args
 156          */
 157         public static void main(String[] args) {
 158                 boolean success = true;
 159
 160                 logger.debug("start");
 161                 PalmaeActivator me = new PalmaeActivator();
 162                 me.doImport();
 163
 164                 if (includeImages){
 165                         System.out.println("Start importing images ...");
 166                         CdmDefaultImport<IImportConfigurator> imageImporter = new CdmDefaultImport<IImportConfigurator>();
 167                         ImageImportConfigurator imageConfigurator = ImageImportConfigurator.NewInstance(
 168                                         PalmaeImageActivator.sourceFolder, cdmDestination, PalmaeImageImport.class);
 169                         imageConfigurator.setSecUuid(secUuid);
 170                         success &= imageImporter.invoke(imageConfigurator);
 171                         System.out.println("End importing images ...");
 172                 }
 173
 174                 if (includeProtologue){
 175                         System.out.println("Start importing protologues ...");
 176                         ImageImportConfigurator imageConfigurator = ImageImportConfigurator.NewInstance(
 177                                         PalmaeProtologueActivator.sourceFile, cdmDestination, PalmaeProtologueImport.class);
 178                         imageConfigurator.setSecUuid(secUuid);
 179
 180                         CdmDefaultImport<IImportConfigurator> imageImporter = new CdmDefaultImport<IImportConfigurator>();
 181                         imageImporter.invoke(imageConfigurator);
 182                         System.out.println("End importing protologues ...");
 183                 }
 184
 185                 if (includeTaxonX){
 186                         System.out.println("Start importing taxonX ...");
 187                         PalmaeTaxonXImportActivator taxonXimporter = new PalmaeTaxonXImportActivator();
 188                         PalmaeTaxonXImportActivator.cdmDestination = cdmDestination;
 189                         PalmaeTaxonXImportActivator.secUuid = secUuid;
 190                         success &= taxonXimporter.runImport();
 191                         System.out.println("End importing taxonX ...");
 192                 }
 193
 194                 String strSuccess = "";
 195                 if (success == false){
 196                         strSuccess = "not ";
 197                 }
 198                 System.out.println("Import " + strSuccess + "successful");
 199
 200         }
 201
 202 }