cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/datagenerator/TaxonGenerator.java

   1 package eu.etaxonomy.cdm.datagenerator;
   2
   3 import java.util.Random;
   4
   5 import eu.etaxonomy.cdm.model.agent.Person;
   6 import eu.etaxonomy.cdm.model.common.Language;
   7 import eu.etaxonomy.cdm.model.common.LanguageString;
   8 import eu.etaxonomy.cdm.model.description.CommonTaxonName;
   9 import eu.etaxonomy.cdm.model.description.TaxonDescription;
  10 import eu.etaxonomy.cdm.model.description.TextData;
  11 import eu.etaxonomy.cdm.model.name.BotanicalName;
  12 import eu.etaxonomy.cdm.model.name.Rank;
  13 import eu.etaxonomy.cdm.model.reference.Book;
  14 import eu.etaxonomy.cdm.model.reference.Database;
  15 import eu.etaxonomy.cdm.model.reference.ReferenceBase;
  16 import eu.etaxonomy.cdm.model.taxon.Synonym;
  17 import eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType;
  18 import eu.etaxonomy.cdm.model.taxon.Taxon;
  19
  20 public class TaxonGenerator {
  21         private static String[] genera = {"Carex", "Abies", "Belladonna", "Dracula", "Maria", "Calendula", "Polygala", "Vincia"};
  22         private static String[] epitheta = {"vulgaris", "magdalena", "officinalis", "alba", "negra", "communa", "alpina", "rotundifolia", "greutheriana", "helventica", "allemania", "franca"};
  23         private static String[] ranks = {"subsp", "var", "f"};
  24
  25         private Random rnd = new Random();
  26
  27         public static Taxon getTestTaxon(){
  28                 Person deCandolle = Person.NewInstance();
  29                 deCandolle.setTitleCache("DC.");
  30                 ReferenceBase sec = Database.NewInstance();
  31                 sec.setTitleCache("Flora lunaea");
  32                 ReferenceBase citationRef = Book.NewInstance();
  33                 citationRef.setTitleCache("Sp. lunarum");
  34
  35         //genus taxon with Name, combinationAuthor,
  36                 BotanicalName botName = BotanicalName.NewInstance(Rank.GENUS());
  37         botName.setTitleCache("Hieracium L.");
  38         botName.setGenusOrUninomial("Hieracium");
  39         botName.setCombinationAuthorTeam(Person.NewInstance());
  40         botName.getCombinationAuthorTeam().setNomenclaturalTitle("L.");
  41         Taxon genusTaxon = Taxon.NewInstance(botName, sec);
  42
  43         //a name that is the basionym of genusTaxon's name
  44         BotanicalName basionym = BotanicalName.NewInstance(Rank.GENUS());
  45         basionym.setTitleCache("Hieracilla DC.");
  46         basionym.setGenusOrUninomial("Hieracilla");
  47         basionym.setCombinationAuthorTeam(deCandolle);
  48         botName.addBasionym(basionym, null, null,"216");
  49
  50         //species taxon that is the child of genus taxon
  51         BotanicalName botSpecies = BotanicalName.NewInstance(Rank.SPECIES());
  52         botSpecies.setTitleCache("Hieracium asturianum Pau");
  53         botSpecies.setGenusOrUninomial("Hieracium");
  54         botSpecies.setSpecificEpithet("asturianum");
  55         botSpecies.setCombinationAuthorTeam(Person.NewInstance());
  56         botSpecies.getCombinationAuthorTeam().setNomenclaturalTitle("Pau");
  57         Taxon childTaxon = Taxon.NewInstance(botSpecies, sec);
  58         childTaxon.setTaxonomicParent(genusTaxon, citationRef, "456");
  59
  60         //homotypic synonym of childTaxon1
  61         BotanicalName botSpecies4= BotanicalName.NewInstance(Rank.SPECIES());
  62         botSpecies4.setTitleCache("Hieracium gueri DC.");
  63         botSpecies4.setGenusOrUninomial("Hieracium");
  64         botSpecies4.setSpecificEpithet("gueri");
  65         botSpecies4.setCombinationAuthorTeam(deCandolle);
  66         Synonym homoSynonym = Synonym.NewInstance(botSpecies4, sec);
  67         childTaxon.addSynonym(homoSynonym, SynonymRelationshipType.HOMOTYPIC_SYNONYM_OF());
  68
  69
  70         //2nd child species taxon that is the child of genus taxon
  71         BotanicalName botSpecies2= BotanicalName.NewInstance(Rank.SPECIES());
  72         botSpecies2.setTitleCache("Hieracium wolffii Zahn");
  73         botSpecies2.setGenusOrUninomial("Hieracium");
  74         botSpecies2.setSpecificEpithet("wolffii");
  75         botSpecies2.setCombinationAuthorTeam(Person.NewInstance());
  76         botSpecies2.getCombinationAuthorTeam().setNomenclaturalTitle("Zahn");
  77         Taxon childTaxon2 = Taxon.NewInstance(botSpecies2, sec);
  78         childTaxon2.setTaxonomicParent(genusTaxon, citationRef, "499");
  79
  80         //heterotypic synonym of childTaxon2
  81         BotanicalName botSpecies3= BotanicalName.NewInstance(Rank.SPECIES());
  82         botSpecies3.setTitleCache("Hieracium lupium DC.");
  83         botSpecies3.setGenusOrUninomial("Hieracium");
  84         botSpecies3.setSpecificEpithet("lupium");
  85         botSpecies3.setCombinationAuthorTeam(deCandolle);
  86         Synonym heteroSynonym = Synonym.NewInstance(botSpecies3, sec);
  87         childTaxon2.addSynonym(heteroSynonym, SynonymRelationshipType.HETEROTYPIC_SYNONYM_OF());
  88
  89         //missaplied Name for childTaxon2
  90         BotanicalName missName= BotanicalName.NewInstance(Rank.SPECIES());
  91         missName.setTitleCache("Hieracium lupium DC.");
  92         missName.setGenusOrUninomial("Hieracium");
  93         missName.setSpecificEpithet("lupium");
  94         missName.setCombinationAuthorTeam(deCandolle);
  95         Taxon misappliedName = Taxon.NewInstance(missName, sec);
  96         childTaxon2.addMisappliedName(misappliedName, citationRef, "125");
  97
  98         genusTaxon.addDescription(getTestDescription());
  99
 100         return genusTaxon;
 101         }
 102
 103         public static TaxonDescription getTestDescription(){
 104                 TaxonDescription taxonDescription = TaxonDescription.NewInstance();
 105                 Language language = Language.DEFAULT();
 106
 107                 //textData
 108                 TextData textData = TextData.NewInstance();
 109                 String descriptionText = "this is a desciption for a taxon";
 110                 LanguageString languageString = LanguageString.NewInstance(descriptionText, language);
 111                 textData.putText(languageString);
 112                 taxonDescription.addElement(textData);
 113
 114                 //commonName
 115                 String commonNameString = "Schönveilchen";
 116                 CommonTaxonName commonName = CommonTaxonName.NewInstance(commonNameString, language);
 117                 taxonDescription.addElement(commonName);
 118
 119                 return taxonDescription;
 120         }
 121 }