app-import/src/main/java/eu/etaxonomy/cdm/app/wp6/palmae/PalmaeActivator.java

   1 /**
   2 * Copyright (C) 2007 EDIT
   3 * European Distributed Institute of Taxonomy
   4 * http://www.e-taxonomy.eu
   5 *
   6 * The contents of this file are subject to the Mozilla Public License Version 1.1
   7 * See LICENSE.TXT at the top of this package for the full license terms.
   8 */
   9
  10 package eu.etaxonomy.cdm.app.wp6.palmae;
  11
  12 import java.util.UUID;
  13
  14 import org.apache.log4j.Logger;
  15
  16 import eu.etaxonomy.cdm.api.application.CdmApplicationController;
  17 import eu.etaxonomy.cdm.app.common.CdmDestinations;
  18 import eu.etaxonomy.cdm.app.tcs.TcsSources;
  19 import eu.etaxonomy.cdm.database.DbSchemaValidation;
  20 import eu.etaxonomy.cdm.database.ICdmDataSource;
  21 import eu.etaxonomy.cdm.io.common.CdmDefaultImport;
  22 import eu.etaxonomy.cdm.io.common.IImportConfigurator.CHECK;
  23 import eu.etaxonomy.cdm.io.common.IImportConfigurator.DO_REFERENCES;
  24 import eu.etaxonomy.cdm.io.tcsrdf.TcsRdfImportConfigurator;
  25 import eu.etaxonomy.cdm.model.description.Feature;
  26 import eu.etaxonomy.cdm.model.description.FeatureNode;
  27 import eu.etaxonomy.cdm.model.description.FeatureTree;
  28
  29 /**
  30  * @author a.mueller
  31  * @created 20.06.2008
  32  * @version 1.0
  33  */
  34 public class PalmaeActivator {
  35         private static Logger logger = Logger.getLogger(PalmaeActivator.class);
  36
  37         //database validation status (create, update, validate ...)
  38         static DbSchemaValidation hbm2dll = DbSchemaValidation.CREATE;
  39         static final String tcsSource = TcsSources.arecaceae_local();
  40         static final ICdmDataSource cdmDestination = CdmDestinations.localH2();
  41 //      static final ICdmDataSource cdmDestination = CdmDestinations.localH2();
  42
  43         static final UUID featureTreeUuid = UUID.fromString("72ccce05-7cc8-4dab-8e47-bf3f5fd848a0");
  44
  45         static final UUID secUuid = UUID.fromString("5f32b8af-0c97-48ac-8d33-6099ed68c625");
  46         static final String sourceSecId = "palm_pub_ed_999999";
  47         //should the taxonX import run as well?
  48         static final boolean includeTaxonX = false;
  49
  50         //check - import
  51         static final CHECK check = CHECK.IMPORT_WITHOUT_CHECK;
  52
  53         //authors
  54         static final boolean doAuthors = true;
  55         //references
  56         static final DO_REFERENCES doReferences =  DO_REFERENCES.ALL;
  57         //names
  58         static final boolean doTaxonNames = true;
  59         static final boolean doRelNames = true;
  60
  61         //static final boolean doTypes = true;
  62         //static final boolean doNameFacts = true;
  63
  64         //taxa
  65         static final boolean doTaxa = true;
  66         static final boolean doRelTaxa = true;
  67         static final boolean doFacts = true;
  68
  69
  70
  71         private boolean doImport(){
  72                 boolean success = true;
  73                 System.out.println("Start import from Tcs("+ tcsSource.toString() + ") ...");
  74
  75                 //make BerlinModel Source
  76                 String source = tcsSource;
  77                 ICdmDataSource destination = cdmDestination;
  78
  79                 TcsRdfImportConfigurator tcsImportConfigurator = TcsRdfImportConfigurator.NewInstance(source,  destination);
  80
  81                 tcsImportConfigurator.setSecUuid(secUuid);
  82                 tcsImportConfigurator.setSourceSecId(sourceSecId);
  83
  84                 tcsImportConfigurator.setDoAuthors(doAuthors);
  85                 tcsImportConfigurator.setDoReferences(doReferences);
  86                 tcsImportConfigurator.setDoTaxonNames(doTaxonNames);
  87                 tcsImportConfigurator.setDoRelNames(doRelNames);
  88                 //tcsImportConfigurator.setDoNameStatus(doNameStatus);
  89                 //tcsImportConfigurator.setDoTypes(doTypes);
  90                 //tcsImportConfigurator.setDoNameFacts(doNameFacts);
  91
  92                 tcsImportConfigurator.setDoTaxa(doTaxa);
  93                 tcsImportConfigurator.setDoRelTaxa(doRelTaxa);
  94                 tcsImportConfigurator.setDoFacts(doFacts);
  95
  96                 tcsImportConfigurator.setCheck(check);
  97                 tcsImportConfigurator.setDbSchemaValidation(hbm2dll);
  98
  99                 // invoke import
 100                 CdmDefaultImport<TcsRdfImportConfigurator> tcsImport = new CdmDefaultImport<TcsRdfImportConfigurator>();
 101                 //new Test().invoke(tcsImportConfigurator);
 102                 success &= tcsImport.invoke(tcsImportConfigurator);
 103
 104
 105                 //make feature tree
 106                 logger.info("Make feature tree");
 107                 CdmApplicationController app = tcsImport.getCdmApp();
 108
 109
 110
 111                 FeatureTree tree = getFeatureTree();
 112                 app.getDescriptionService().saveFeatureTree(tree);
 113                 System.out.println("End import from TCS ("+ source.toString() + ")...");
 114
 115                 return success;
 116         }
 117
 118
 119         private FeatureTree getFeatureTree(){
 120
 121                 FeatureTree result = FeatureTree.NewInstance(featureTreeUuid);
 122                 FeatureNode root = result.getRoot();
 123
 124                 FeatureNode newNode;
 125                 newNode = FeatureNode.NewInstance(Feature.INTRODUCTION());
 126                 root.addChild(newNode);
 127                 newNode = FeatureNode.NewInstance(Feature.DISTRIBUTION());
 128                 root.addChild(newNode);
 129                 newNode = FeatureNode.NewInstance(Feature.BIOLOGY_ECOLOGY());
 130                 root.addChild(newNode);
 131                 newNode = FeatureNode.NewInstance(Feature.CONSERVATION());
 132                 root.addChild(newNode);
 133                 newNode = FeatureNode.NewInstance(Feature.COMMON_NAME());
 134                 root.addChild(newNode);
 135                 newNode = FeatureNode.NewInstance(Feature.ETYMOLOGY());
 136                 root.addChild(newNode);
 137                 newNode = FeatureNode.NewInstance(Feature.USES());
 138                 root.addChild(newNode);
 139                 newNode = FeatureNode.NewInstance(Feature.CULTIVATION());
 140                 root.addChild(newNode);
 141                 // "anatomy", "fossil record" "relationships"
 142                 //for future
 143                 newNode = FeatureNode.NewInstance(Feature.DISCUSSION());
 144                 root.addChild(newNode);
 145                 newNode = FeatureNode.NewInstance(Feature.DIAGNOSIS());
 146                 root.addChild(newNode);
 147                 newNode = FeatureNode.NewInstance(Feature.DESCRIPTION());
 148                 root.addChild(newNode);
 149                 newNode = FeatureNode.NewInstance(Feature.MATERIALS_EXAMINED());
 150                 root.addChild(newNode);
 151
 152                 return result;
 153
 154
 155         }
 156
 157         /**
 158          * @param args
 159          */
 160         public static void main(String[] args) {
 161                 boolean success = true;
 162
 163                 logger.debug("start");
 164                 PalmaeActivator me = new PalmaeActivator();
 165                 me.doImport();
 166
 167                 if (includeTaxonX){
 168                         PalmaeTaxonXImportActivator taxonXimporter = new PalmaeTaxonXImportActivator();
 169                         PalmaeTaxonXImportActivator.cdmDestination = cdmDestination;
 170                         PalmaeTaxonXImportActivator.secUuid = secUuid;
 171                         success &= taxonXimporter.runImport();
 172                 }
 173
 174                 String strSuccess = "";
 175                 if (success == false){
 176                         strSuccess = "not ";
 177                 }
 178                 System.out.println("Import " + strSuccess + "successful");
 179
 180         }
 181
 182 }