cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/dto/TaxonRelationshipsDTOTest.java

   1 /**
   2 * Copyright (C) 2018 EDIT
   3 * European Distributed Institute of Taxonomy
   4 * http://www.e-taxonomy.eu
   5 *
   6 * The contents of this file are subject to the Mozilla Public License Version 1.1
   7 * See LICENSE.TXT at the top of this package for the full license terms.
   8 */
   9 package eu.etaxonomy.cdm.api.service.dto;
  10
  11 import java.util.List;
  12
  13 import org.junit.Assert;
  14 import org.junit.Before;
  15 import org.junit.BeforeClass;
  16 import org.junit.Test;
  17
  18 import eu.etaxonomy.cdm.api.service.dto.TaxonRelationshipsDTO.TaxonRelation;
  19 import eu.etaxonomy.cdm.format.taxon.TaxonRelationshipFormatter;
  20 import eu.etaxonomy.cdm.model.agent.Person;
  21 import eu.etaxonomy.cdm.model.common.DefaultTermInitializer;
  22 import eu.etaxonomy.cdm.model.common.Language;
  23 import eu.etaxonomy.cdm.model.common.RelationshipBase.Direction;
  24 import eu.etaxonomy.cdm.model.common.VerbatimTimePeriod;
  25 import eu.etaxonomy.cdm.model.name.Rank;
  26 import eu.etaxonomy.cdm.model.name.TaxonName;
  27 import eu.etaxonomy.cdm.model.name.TaxonNameFactory;
  28 import eu.etaxonomy.cdm.model.reference.Reference;
  29 import eu.etaxonomy.cdm.model.reference.ReferenceFactory;
  30 import eu.etaxonomy.cdm.model.taxon.Taxon;
  31 import eu.etaxonomy.cdm.model.taxon.TaxonRelationship;
  32 import eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType;
  33 import eu.etaxonomy.cdm.strategy.cache.TaggedText;
  34 import eu.etaxonomy.cdm.strategy.parser.TimePeriodParser;
  35
  36 /**
  37  * @author a.mueller
  38  * @since 15.08.2018
  39  *
  40  */
  41 public class TaxonRelationshipsDTOTest {
  42     private TaxonRelationship taxonRel;
  43     private Reference relSec;
  44
  45     private Taxon fromTaxon;
  46     private TaxonName fromName;
  47     private Reference fromSec;
  48
  49     private Taxon toTaxon;
  50     private TaxonName toName;
  51     private Reference toSec;
  52
  53     private TaxonRelationshipFormatter formatter;
  54     private boolean reverse;
  55
  56     Person toNameAuthor;
  57     private List<Language> languages;
  58
  59     /**
  60      * @throws java.lang.Exception
  61      */
  62     @BeforeClass
  63     public static void setUpBeforeClass() throws Exception {
  64         if (Language.DEFAULT() == null){
  65             new DefaultTermInitializer().initialize();
  66         }
  67     }
  68
  69     /**
  70      * @throws java.lang.Exception
  71      */
  72     @Before
  73     public void setUp() throws Exception {
  74         fromName = TaxonNameFactory.NewBotanicalInstance(Rank.SPECIES());
  75         fromName.setGenusOrUninomial("Abies");
  76         fromName.setSpecificEpithet("alba");
  77
  78         toName = TaxonNameFactory.NewBotanicalInstance(Rank.SPECIES());
  79         toName.setGenusOrUninomial("Pinus");
  80         toName.setSpecificEpithet("pinova");
  81         toNameAuthor = Person.NewInstance("Mill.", "Miller", "A.", "Andrew");
  82         toName.setCombinationAuthorship(toNameAuthor);
  83
  84         fromSec = ReferenceFactory.newGeneric();
  85         fromSec.setTitle("From Sec");
  86         String initials = "J.M.";
  87         fromSec.setAuthorship(Person.NewInstance(null, "Macfarlane", initials, null));
  88         fromSec.setDatePublished(VerbatimTimePeriod.NewVerbatimInstance(1918));
  89
  90         relSec = ReferenceFactory.newGeneric();
  91         relSec.setTitle("From rel reference");
  92         initials = null; //"M.R.";
  93         relSec.setAuthorship(Person.NewInstance(null, "Cheek", initials, null));
  94         relSec.setDatePublished(VerbatimTimePeriod.NewVerbatimInstance(1919));
  95
  96         toSec = ReferenceFactory.newGeneric();
  97         toSec.setTitle("To Sec");
  98         toSec.setAuthorship(Person.NewTitledInstance("ToSecAuthor"));
  99         toSec.setDatePublished(VerbatimTimePeriod.NewVerbatimInstance(1928));
 100
 101         fromTaxon = Taxon.NewInstance(fromName, fromSec);
 102         toTaxon = Taxon.NewInstance(toName, toSec);
 103
 104         TaxonRelationshipType type = TaxonRelationshipType.MISAPPLIED_NAME_FOR();
 105         taxonRel = fromTaxon.addTaxonRelation(toTaxon, type, relSec, "123");
 106         reverse = false;
 107
 108         formatter = new TaxonRelationshipFormatter();
 109
 110         languages = null;
 111     }
 112
 113     @Test
 114     public void test() {
 115         Reference sec2 = ReferenceFactory.newGeneric();
 116         sec2.setAuthorship(Person.NewInstance("Mue.", "Mueller", "I.", "Inger"));
 117         sec2.setDatePublished(TimePeriodParser.parseStringVerbatim("1987"));
 118         Taxon from2 = Taxon.NewInstance(fromName, sec2);
 119         TaxonRelationship rel2 = toTaxon.addMisappliedName(from2, sec2, "333");
 120         //same as rel1 except for sec
 121         TaxonRelationship rel3 = toTaxon.addMisappliedName(from2, taxonRel.getCitation(), taxonRel.getCitationMicroReference());
 122
 123         TaxonRelationshipsDTO dto = new TaxonRelationshipsDTO();
 124
 125         dto.addRelation(taxonRel, Direction.relatedFrom, languages);
 126         dto.addRelation(rel2, Direction.relatedFrom, languages);
 127         TaxonRelation relToDuplicate = dto.addRelation(rel3, Direction.relatedFrom, languages);
 128         dto.createMisapplicationString();
 129         List<List<TaggedText>> misapplications = dto.getMisapplications();
 130         Assert.assertEquals(2, misapplications.size());  //1 deduplicated
 131         List<TaggedText> deduplicated = misapplications.get(0);
 132         Assert.assertEquals(14, deduplicated.size());
 133         Assert.assertSame(relToDuplicate.getTaggedText().get(7), deduplicated.get(9));
 134         Assert.assertEquals(12, misapplications.get(1).size());
 135
 136     }
 137
 138 }