cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcsxml/TcsXmlPublicationsIO.java

   1 /**
   2  *
   3  */
   4 package eu.etaxonomy.cdm.io.tcsxml;
   5
   6 import java.util.List;
   7 import java.util.Map;
   8
   9 import org.apache.log4j.Logger;
  10 import org.jdom.Element;
  11 import org.jdom.Namespace;
  12
  13 import eu.etaxonomy.cdm.api.service.IReferenceService;
  14 import eu.etaxonomy.cdm.common.DoubleResult;
  15 import eu.etaxonomy.cdm.common.XmlHelp;
  16 import eu.etaxonomy.cdm.io.common.ICdmIO;
  17 import eu.etaxonomy.cdm.io.common.IImportConfigurator;
  18 import eu.etaxonomy.cdm.io.common.ImportHelper;
  19 import eu.etaxonomy.cdm.io.common.MapWrapper;
  20 import eu.etaxonomy.cdm.model.common.CdmBase;
  21 import eu.etaxonomy.cdm.model.reference.Generic;
  22 import eu.etaxonomy.cdm.model.reference.ReferenceBase;
  23
  24 /**
  25  * @author a.mueller
  26  *
  27  */
  28 public class TcsXmlPublicationsIO extends TcsXmlIoBase implements ICdmIO {
  29         private static final Logger logger = Logger.getLogger(TcsXmlPublicationsIO.class);
  30
  31         private static int modCount = 1000;
  32
  33         public TcsXmlPublicationsIO(){
  34                 super();
  35         }
  36
  37         @Override
  38         public boolean doCheck(IImportConfigurator config){
  39                 boolean result = true;
  40                 result &= checkArticlesWithoutJournal(config);
  41                 //result &= checkPartOfJournal(config);
  42
  43                 return result;
  44         }
  45
  46         private static boolean checkArticlesWithoutJournal(IImportConfigurator bmiConfig){
  47                 try {
  48                         boolean result = true;
  49                         //TODO
  50                         //                              result = firstRow = false;
  51 //                      }
  52 //
  53                         return result;
  54                 } catch (Exception e) {
  55                         e.printStackTrace();
  56                         return false;
  57                 }
  58         }
  59
  60
  61
  62         @Override
  63         public boolean doInvoke(IImportConfigurator config,
  64                         Map<String, MapWrapper<? extends CdmBase>> stores){
  65
  66                 logger.info("start make Publications ...");
  67                 boolean success = true;
  68                 String childName;
  69                 boolean obligatory;
  70
  71                 MapWrapper<ReferenceBase> referenceMap = (MapWrapper<ReferenceBase>)stores.get(ICdmIO.REFERENCE_STORE);
  72                 IReferenceService referenceService = config.getCdmAppController().getReferenceService();
  73
  74                 TcsXmlImportConfigurator tcsConfig = (TcsXmlImportConfigurator)config;
  75                 Element elDataSet = getDataSetElement(tcsConfig);
  76                 Namespace tcsNamespace = tcsConfig.getTcsXmlNamespace();
  77
  78                 DoubleResult<Element, Boolean> doubleResult;
  79                 childName = "Publications";
  80                 obligatory = false;
  81                 doubleResult = XmlHelp.getSingleChildElement(elDataSet, childName, tcsNamespace, obligatory);
  82                 success &= doubleResult.getSecondResult();
  83                 Element elPublications = doubleResult.getFirstResult();
  84
  85                 String tcsElementName = "Publication";
  86                 String idNamespace = "Publication";
  87                 List<Element> elPublicationList = elPublications.getChildren(tcsElementName, tcsNamespace);
  88
  89                 int i = 0;
  90                 //for each taxonName
  91                 for (Element elPublication : elPublicationList){
  92                         if ((++i % modCount) == 0){ logger.info("publications handled: " + (i-1));}
  93
  94                         //create TaxonName element
  95                         String strId = elPublication.getAttributeValue("id");
  96
  97                         childName = "Simple";
  98                         obligatory = true;
  99                         doubleResult = XmlHelp.getSingleChildElement(elPublication, childName, tcsNamespace, obligatory);
 100                         success &= doubleResult.getSecondResult();
 101                         Element elSimple = doubleResult.getFirstResult();
 102
 103                         String simple = elSimple.getTextNormalize();
 104                         ReferenceBase reference = Generic.NewInstance();
 105                         reference.setTitleCache(simple);
 106
 107                         childName = "PublicationDetailed";
 108                         obligatory = false;
 109                         doubleResult =  XmlHelp.getSingleChildElement(elPublication, childName, tcsNamespace, obligatory);
 110                         success &= doubleResult.getSecondResult();
 111                         Element elPublicationDetailed = doubleResult.getFirstResult();
 112
 113                         success &= tcsConfig.getPlaceholderClass().makePublicationDetailed(tcsConfig, elPublicationDetailed, reference);
 114                         ImportHelper.setOriginalSource(reference, config.getSourceReference(), strId, idNamespace);
 115
 116                         referenceMap.put(strId, reference);
 117
 118
 119                 }
 120 //              //save and store in map
 121 //              logger.info("Save nomenclatural references (" + nomRefCount + ")");
 122 //              referenceService.saveReferenceAll(nomRefMap.objects());
 123                 logger.info("Save bibliographical references (" + i +")");
 124                 referenceService.saveReferenceAll(referenceMap.objects());
 125
 126                 logger.info("end make publications ...");
 127                 return success;
 128         }
 129
 130         /* (non-Javadoc)
 131          * @see eu.etaxonomy.cdm.io.common.CdmIoBase#isIgnore(eu.etaxonomy.cdm.io.common.IImportConfigurator)
 132          */
 133         protected boolean isIgnore(IImportConfigurator config){
 134                 return (config.getDoReferences() == IImportConfigurator.DO_REFERENCES.NONE);
 135         }
 136
 137 }