cdmlib-services/src/test/java/eu/etaxonomy/cdm/datagenerator/TaxonGenerator.java

   1 /**
   2 * Copyright (C) 2009 EDIT
   3 * European Distributed Institute of Taxonomy
   4 * http://www.e-taxonomy.eu
   5 *
   6 * The contents of this file are subject to the Mozilla Public License Version 1.1
   7 * See LICENSE.TXT at the top of this package for the full license terms.
   8 */
   9
  10 package eu.etaxonomy.cdm.datagenerator;
  11
  12 import java.util.Random;
  13 import java.util.UUID;
  14
  15 import eu.etaxonomy.cdm.model.agent.Person;
  16 import eu.etaxonomy.cdm.model.common.Language;
  17 import eu.etaxonomy.cdm.model.common.LanguageString;
  18 import eu.etaxonomy.cdm.model.description.CommonTaxonName;
  19 import eu.etaxonomy.cdm.model.description.TaxonDescription;
  20 import eu.etaxonomy.cdm.model.description.TextData;
  21 import eu.etaxonomy.cdm.model.name.BotanicalName;
  22 import eu.etaxonomy.cdm.model.name.Rank;
  23 import eu.etaxonomy.cdm.model.reference.Reference;
  24 import eu.etaxonomy.cdm.model.reference.ReferenceFactory;
  25 import eu.etaxonomy.cdm.model.taxon.Classification;
  26 import eu.etaxonomy.cdm.model.taxon.Synonym;
  27 import eu.etaxonomy.cdm.model.taxon.SynonymType;
  28 import eu.etaxonomy.cdm.model.taxon.Taxon;
  29
  30 public class TaxonGenerator {
  31         private static String[] genera = {"Carex", "Abies", "Belladonna", "Dracula", "Maria", "Calendula", "Polygala", "Vincia"};
  32         private static String[] epitheta = {"vulgaris", "magdalena", "officinalis", "alba", "negra", "communa", "alpina", "rotundifolia", "greutheriana", "helventica", "allemania", "franca"};
  33         private static String[] ranks = {"subsp", "var", "f"};
  34
  35         public static UUID GENUS_NAME_UUID = UUID.fromString("8d761fc4-b509-42f4-9568-244161934336");
  36         public static UUID GENUS_UUID = UUID.fromString("bf4298a8-1735-4353-a210-244442e1bd62");
  37         public static UUID BASIONYM_UUID = UUID.fromString("7911c51d-ccb7-4708-8992-639eae58a0e3");
  38         public static UUID SPECIES1_UUID = UUID.fromString("f0eb77d9-76e0-47f4-813f-9b5605b78685");
  39         public static UUID SPECIES1_NAME_UUID = UUID.fromString("efd78713-126f-42e1-9070-a1ff83f12abf");
  40         public static UUID SYNONYM_NAME_UUID = UUID.fromString("b9cbaa74-dbe0-4930-8050-b7754ce85dc0");
  41         public static UUID SPECIES2_NAME_UUID = UUID.fromString("0267ab67-483e-4da5-b654-11013b242c22");
  42         public static UUID SPECIES2_UUID = UUID.fromString("e20eb549-ced6-4e79-9d74-44f0792a4929");
  43         public static UUID SYNONYM2_NAME_UUID = UUID.fromString("7c17c811-4201-454b-8108-7be7c91c0938");
  44         public static UUID SPECIES5_NAME_UUID = UUID.fromString("0c6ecaac-804d-49e5-a33f-1b7ee77439e3");
  45         //public static UUID DESCRIPTION1_UUID = UUID.fromString("f3e061f6-c5df-465c-a253-1e18ab4c7e50");
  46         //public static UUID DESCRIPTION2_UUID = UUID.fromString("1b009a40-ebff-4f7e-9f7f-75a850ba995d");
  47
  48
  49
  50         private final Random rnd = new Random();
  51
  52         public static Taxon getTestTaxon(){
  53                 int descrIndex = 6000;
  54                 Person deCandolle = Person.NewInstance();
  55                 deCandolle.setTitleCache("DC.", true);
  56
  57                 Reference sec = ReferenceFactory.newDatabase();
  58                 sec.setTitleCache("Flora lunaea", true);
  59                 Reference citationRef = ReferenceFactory.newBook();
  60                 citationRef.setTitleCache("Sp. lunarum", true);
  61
  62         //genus taxon with Name, combinationAuthor,
  63                 BotanicalName botName = BotanicalName.NewInstance(Rank.GENUS());
  64         botName.setTitleCache("Hieracium L.", true);
  65         botName.setGenusOrUninomial("Hieracium");
  66         botName.setCombinationAuthorship(Person.NewInstance());
  67         botName.getCombinationAuthorship().setNomenclaturalTitle("L.");
  68         botName.setUuid(GENUS_NAME_UUID);
  69         Taxon genusTaxon = Taxon.NewInstance(botName, sec);
  70         genusTaxon.setUuid(GENUS_UUID);
  71
  72         //a name that is the basionym of genusTaxon's name
  73         BotanicalName basionym = BotanicalName.NewInstance(Rank.GENUS());
  74         basionym.setTitleCache("Hieracilla DC.", true);
  75         basionym.setGenusOrUninomial("Hieracilla");
  76         basionym.setCombinationAuthorship(deCandolle);
  77         basionym.setUuid(BASIONYM_UUID);
  78         botName.addBasionym(basionym, null, null,"216");
  79
  80         //species taxon that is the child of genus taxon
  81         BotanicalName botSpecies = BotanicalName.NewInstance(Rank.SPECIES());
  82         botSpecies.setTitleCache("Hieracium asturianum Pau", true);
  83         botSpecies.setGenusOrUninomial("Hieracium");
  84         botSpecies.setSpecificEpithet("asturianum");
  85         botSpecies.setCombinationAuthorship(Person.NewInstance());
  86         botSpecies.getCombinationAuthorship().setNomenclaturalTitle("Pau");
  87         botSpecies.setUuid(SPECIES1_NAME_UUID);
  88         Taxon childTaxon = Taxon.NewInstance(botSpecies, sec);
  89         childTaxon.setUuid(SPECIES1_UUID);
  90         TaxonDescription taxDesc = getTestDescription(descrIndex++);
  91         //taxDesc.setUuid(DESCRIPTION1_UUID);
  92         childTaxon.addDescription(taxDesc);
  93
  94         Classification classification = getTestClassification("TestClassification");
  95         classification.addParentChild(genusTaxon, childTaxon, citationRef, "456");
  96
  97         //homotypic synonym of childTaxon1
  98         BotanicalName botSpecies4= BotanicalName.NewInstance(Rank.SPECIES());
  99         botSpecies4.setTitleCache("Hieracium gueri DC.", true);
 100         botSpecies4.setGenusOrUninomial("Hieracium");
 101         botSpecies4.setSpecificEpithet("gueri");
 102         botSpecies4.setCombinationAuthorship(deCandolle);
 103         botSpecies4.setUuid(SYNONYM_NAME_UUID);
 104         Synonym homoSynonym = Synonym.NewInstance(botSpecies4, sec);
 105         childTaxon.addSynonym(homoSynonym, SynonymType.HOMOTYPIC_SYNONYM_OF());
 106
 107
 108         //2nd child species taxon that is the child of genus taxon
 109         BotanicalName botSpecies2= BotanicalName.NewInstance(Rank.SPECIES());
 110         botSpecies2.setTitleCache("Hieracium wolffii Zahn", true);
 111         botSpecies2.setGenusOrUninomial("Hieracium");
 112         botSpecies2.setSpecificEpithet("wolffii");
 113         botSpecies2.setCombinationAuthorship(Person.NewInstance());
 114         botSpecies2.getCombinationAuthorship().setNomenclaturalTitle("Zahn");
 115         botSpecies2.setUuid(SPECIES2_NAME_UUID);
 116         Taxon childTaxon2 = Taxon.NewInstance(botSpecies2, sec);
 117         childTaxon2.setUuid(SPECIES2_UUID);
 118         classification.addParentChild(genusTaxon, childTaxon2, citationRef, "499");
 119
 120         //heterotypic synonym of childTaxon2
 121         BotanicalName botSpecies3= BotanicalName.NewInstance(Rank.SPECIES());
 122         botSpecies3.setTitleCache("Hieracium lupium DC.", true);
 123         botSpecies3.setGenusOrUninomial("Hieracium");
 124         botSpecies3.setSpecificEpithet("lupium");
 125         botSpecies3.setCombinationAuthorship(deCandolle);
 126         botSpecies3.setUuid(SYNONYM2_NAME_UUID);
 127         Synonym heteroSynonym = Synonym.NewInstance(botSpecies3, sec);
 128         childTaxon2.addSynonym(heteroSynonym, SynonymType.HETEROTYPIC_SYNONYM_OF());
 129
 130         //missaplied Name for childTaxon2
 131         BotanicalName missName= BotanicalName.NewInstance(Rank.SPECIES());
 132         missName.setTitleCache("Hieracium lupium DC.", true);
 133         missName.setGenusOrUninomial("Hieracium");
 134         missName.setSpecificEpithet("lupium");
 135         missName.setCombinationAuthorship(deCandolle);
 136         missName.setUuid(SPECIES5_NAME_UUID);
 137         Taxon misappliedName = Taxon.NewInstance(missName, sec);
 138         childTaxon2.addMisappliedName(misappliedName, citationRef, "125");
 139         taxDesc = getTestDescription(descrIndex++);
 140        // taxDesc.setUuid(DESCRIPTION2_UUID);
 141         genusTaxon.addDescription(taxDesc);
 142
 143
 144         return genusTaxon;
 145         }
 146
 147         public static TaxonDescription getTestDescription(int index){
 148                 TaxonDescription taxonDescription = TaxonDescription.NewInstance();
 149                 Language language = Language.DEFAULT();
 150                 //taxonDescription.setId(index);
 151
 152                 //textData
 153                 TextData textData = TextData.NewInstance();
 154                 String descriptionText = "this is a desciption for a taxon";
 155                 LanguageString languageString = LanguageString.NewInstance(descriptionText, language);
 156                 textData.putText(languageString);
 157                 taxonDescription.addElement(textData);
 158
 159                 //commonName
 160
 161                 String commonNameString = "Schönveilchen";
 162                 CommonTaxonName commonName = CommonTaxonName.NewInstance(commonNameString, language);
 163                 taxonDescription.addElement(commonName);
 164
 165                 return taxonDescription;
 166         }
 167
 168         public static Classification getTestClassification(String name){
 169                 return Classification.NewInstance(name);
 170         }
 171 }