app-import/src/main/java/eu/etaxonomy/cdm/app/wp6/cichorieae/CichorieaeActivator.java

   1 /**
   2 * Copyright (C) 2007 EDIT
   3 * European Distributed Institute of Taxonomy
   4 * http://www.e-taxonomy.eu
   5 *
   6 * The contents of this file are subject to the Mozilla Public License Version 1.1
   7 * See LICENSE.TXT at the top of this package for the full license terms.
   8 */
   9
  10 package eu.etaxonomy.cdm.app.wp6.cichorieae;
  11
  12 import java.io.File;
  13 import java.util.UUID;
  14
  15 import org.apache.log4j.Logger;
  16
  17 import eu.etaxonomy.cdm.api.application.CdmApplicationController;
  18 import eu.etaxonomy.cdm.app.berlinModelImport.BerlinModelSources;
  19 import eu.etaxonomy.cdm.app.berlinModelImport.TreeCreator;
  20 import eu.etaxonomy.cdm.app.common.CdmDestinations;
  21 import eu.etaxonomy.cdm.database.DbSchemaValidation;
  22 import eu.etaxonomy.cdm.database.ICdmDataSource;
  23 import eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelImportConfigurator;
  24 import eu.etaxonomy.cdm.io.common.CdmDefaultImport;
  25 import eu.etaxonomy.cdm.io.common.Source;
  26 import eu.etaxonomy.cdm.io.common.IImportConfigurator.CHECK;
  27 import eu.etaxonomy.cdm.io.common.IImportConfigurator.DO_REFERENCES;
  28 import eu.etaxonomy.cdm.io.common.IImportConfigurator.EDITOR;
  29 import eu.etaxonomy.cdm.model.common.ISourceable;
  30 import eu.etaxonomy.cdm.model.description.Feature;
  31 import eu.etaxonomy.cdm.model.description.FeatureNode;
  32 import eu.etaxonomy.cdm.model.description.FeatureTree;
  33 import eu.etaxonomy.cdm.model.name.NomenclaturalCode;
  34 import eu.etaxonomy.cdm.model.name.ZoologicalName;
  35
  36
  37 /**
  38  * TODO add the following to a wiki page:
  39  * HINT: If you are about to import into a mysql data base running under windows and if you wish to dump and restore the resulting data bas under another operation systen
  40  * you must set the mysql system variable lower_case_table_names = 0 in order to create data base with table compatible names.
  41  *
  42  *
  43  * @author a.mueller
  44  *
  45  */
  46 public class CichorieaeActivator {
  47         private static final Logger logger = Logger.getLogger(CichorieaeActivator.class);
  48
  49         //database validation status (create, update, validate ...)
  50         static DbSchemaValidation hbm2dll = DbSchemaValidation.CREATE;
  51         static final Source berlinModelSource = BerlinModelSources.EDIT_CICHORIEAE();
  52         static final ICdmDataSource cdmDestination = CdmDestinations.localH2Cichorieae();
  53
  54         static final UUID secUuid = UUID.fromString("6924c75d-e0d0-4a6d-afb7-3dd8c71195ca");
  55         static final int sourceSecId = 7800000;
  56
  57         static final UUID featureTreeUuid = UUID.fromString("ae9615b8-bc60-4ed0-ad96-897f9226d568");
  58         static final Object[] featureKeyList = new Integer[]{1, 31, 4, 98, 41};
  59
  60         static final String mediaUrlString = "http://wp5.e-taxonomy.eu/dataportal/cichorieae/media/protolog/";
  61         //Mac
  62         //static final File mediaPath = new File("/Volumes/protolog/protolog/");
  63         //Windows
  64         static final File mediaPath = new File("\\\\media\\editwp6\\protolog");
  65         // set to zero for unlimited nameFacts
  66         static final int maximumNumberOfNameFacts = 0;
  67
  68
  69         //check - import
  70         static final CHECK check = CHECK.CHECK_AND_IMPORT;
  71
  72         //editor - import
  73         static final EDITOR editor = EDITOR.EDITOR_AS_EDITOR;
  74
  75         //NomeclaturalCode
  76         static final NomenclaturalCode nomenclaturalCode = NomenclaturalCode.ICBN;
  77
  78         //ignore null
  79         static final boolean ignoreNull = true;
  80
  81
  82 // **************** ALL *********************
  83         //authors
  84         static final boolean doAuthors = true;
  85         //references
  86         static final DO_REFERENCES doReferences =  DO_REFERENCES.ALL;
  87         //names
  88         static final boolean doTaxonNames = true;
  89         static final boolean doRelNames = true;
  90         static final boolean doNameStatus = true;
  91         static final boolean doTypes = true;
  92         static final boolean doNameFacts = false;
  93
  94         //taxa
  95         static final boolean doTaxa = true;
  96         static final boolean doRelTaxa = true;
  97         static final boolean doFacts = true;
  98         static final boolean doOccurences = true;
  99
 100         //etc.
 101         static final boolean doMarker = true;
 102         static final boolean doUser = true;
 103
 104
 105 // **************** SELECTED *********************
 106
 107 //      //authors
 108 //      static final boolean doAuthors = false;
 109 //      //references
 110 //      static final DO_REFERENCES doReferences =  DO_REFERENCES.NONE;
 111 //      //names
 112 //      static final boolean doTaxonNames = false;
 113 //      static final boolean doRelNames = false;
 114 //      static final boolean doNameStatus = false;
 115 //      static final boolean doTypes = false;
 116 //      static final boolean doNameFacts = false;
 117 //
 118 //      //taxa
 119 //      static final boolean doTaxa = true;
 120 //      static final boolean doRelTaxa = false;
 121 //      static final boolean doFacts = false;
 122 //      static final boolean doOccurences = false;
 123 //
 124 //      //etc.
 125 //      static final boolean doMarker = true;
 126 //      static final boolean doUser = true;
 127
 128
 129         /**
 130          * @param args
 131          */
 132         public static void main(String[] args) {
 133                 System.out.println("Start import from BerlinModel("+ berlinModelSource.getDatabase() + ") to " + cdmDestination.getDatabase() + " ...");
 134
 135                 //make BerlinModel Source
 136                 Source source = berlinModelSource;
 137                 ICdmDataSource destination = cdmDestination;
 138
 139                 BerlinModelImportConfigurator bmImportConfigurator = BerlinModelImportConfigurator.NewInstance(source,  destination);
 140
 141                 bmImportConfigurator.setSecUuid(secUuid);
 142                 bmImportConfigurator.setSourceSecId(sourceSecId);
 143
 144                 bmImportConfigurator.setNomenclaturalCode(nomenclaturalCode);
 145
 146                 bmImportConfigurator.setIgnoreNull(ignoreNull);
 147                 bmImportConfigurator.setDoAuthors(doAuthors);
 148                 bmImportConfigurator.setDoReferences(doReferences);
 149                 bmImportConfigurator.setDoTaxonNames(doTaxonNames);
 150                 bmImportConfigurator.setDoRelNames(doRelNames);
 151                 bmImportConfigurator.setDoNameStatus(doNameStatus);
 152                 bmImportConfigurator.setDoTypes(doTypes);
 153                 bmImportConfigurator.setDoNameFacts(doNameFacts);
 154
 155                 bmImportConfigurator.setDoTaxa(doTaxa);
 156                 bmImportConfigurator.setDoRelTaxa(doRelTaxa);
 157                 bmImportConfigurator.setDoFacts(doFacts);
 158                 bmImportConfigurator.setDoOccurrence(doOccurences);
 159
 160                 bmImportConfigurator.setDoMarker(doMarker);
 161                 bmImportConfigurator.setDoUser(doUser);
 162                 bmImportConfigurator.setDbSchemaValidation(hbm2dll);
 163
 164                 // mediaResourceLocations
 165                 if ( mediaPath.exists() && mediaPath.isDirectory()){
 166                         bmImportConfigurator.setMediaUrl(mediaUrlString);
 167                         bmImportConfigurator.setMediaPath(mediaPath);
 168                 }else{
 169                         logger.warn("Could not configure mediaResourceLocations");
 170                 }
 171
 172                 // maximum number of name facts to import
 173                 bmImportConfigurator.setMaximumNumberOfNameFacts(maximumNumberOfNameFacts);
 174
 175
 176                 bmImportConfigurator.setCheck(check);
 177                 bmImportConfigurator.setEditor(editor);
 178
 179                 // invoke import
 180                 CdmDefaultImport<BerlinModelImportConfigurator> bmImport = new CdmDefaultImport<BerlinModelImportConfigurator>();
 181                 bmImport.invoke(bmImportConfigurator);
 182
 183                 if (doFacts && bmImportConfigurator.getCheck().equals(CHECK.CHECK_AND_IMPORT)  || bmImportConfigurator.getCheck().equals(CHECK.IMPORT_WITHOUT_CHECK)    ){
 184                         CdmApplicationController app = bmImport.getCdmAppController();
 185                         ISourceable obj = app.getCommonService().getSourcedObjectByIdInSource(ZoologicalName.class, "1000027", null);
 186                         logger.info(obj);
 187
 188                         //make feature tree
 189                         FeatureTree tree = TreeCreator.flatTree(featureTreeUuid, bmImportConfigurator.getFeatureMap(), featureKeyList);
 190                         FeatureNode imageNode = FeatureNode.NewInstance(Feature.IMAGE());
 191                         tree.getRoot().addChild(imageNode);
 192                         FeatureNode distributionNode = FeatureNode.NewInstance(Feature.DISTRIBUTION());
 193                         tree.getRoot().addChild(distributionNode, 2);
 194                         app.getDescriptionService().saveFeatureTree(tree);
 195                 }
 196
 197                 System.out.println("End import from BerlinModel ("+ source.getDatabase() + ")...");
 198         }
 199
 200 }