app-import/src/main/java/eu/etaxonomy/cdm/app/wp6/palmae/PalmaeActivator.java

   1 /**
   2 * Copyright (C) 2007 EDIT
   3 * European Distributed Institute of Taxonomy
   4 * http://www.e-taxonomy.eu
   5 *
   6 * The contents of this file are subject to the Mozilla Public License Version 1.1
   7 * See LICENSE.TXT at the top of this package for the full license terms.
   8 */
   9
  10 package eu.etaxonomy.cdm.app.wp6.palmae;
  11
  12 import java.io.File;
  13 import java.util.UUID;
  14
  15 import org.apache.log4j.Logger;
  16
  17 import eu.etaxonomy.cdm.api.application.CdmApplicationController;
  18 import eu.etaxonomy.cdm.app.common.CdmDestinations;
  19 import eu.etaxonomy.cdm.app.images.ImageImportConfigurator;
  20 import eu.etaxonomy.cdm.app.tcs.TcsSources;
  21 import eu.etaxonomy.cdm.app.wp6.palmae.config.PalmaeProtologueImportConfigurator;
  22 import eu.etaxonomy.cdm.database.DbSchemaValidation;
  23 import eu.etaxonomy.cdm.database.ICdmDataSource;
  24 import eu.etaxonomy.cdm.io.PalmaeImageImport;
  25 import eu.etaxonomy.cdm.io.PalmaeProtologueImport;
  26 import eu.etaxonomy.cdm.io.common.CdmDefaultImport;
  27 import eu.etaxonomy.cdm.io.common.IImportConfigurator;
  28 import eu.etaxonomy.cdm.io.common.IImportConfigurator.CHECK;
  29 import eu.etaxonomy.cdm.io.common.IImportConfigurator.DO_REFERENCES;
  30 import eu.etaxonomy.cdm.io.tcsrdf.TcsRdfImportConfigurator;
  31 import eu.etaxonomy.cdm.model.description.Feature;
  32 import eu.etaxonomy.cdm.model.description.FeatureNode;
  33 import eu.etaxonomy.cdm.model.description.FeatureTree;
  34
  35 /**
  36  * @author a.mueller
  37  * @created 20.06.2008
  38  * @version 1.0
  39  */
  40 public class PalmaeActivator {
  41         private static final Logger logger = Logger.getLogger(PalmaeActivator.class);
  42
  43         //database validation status (create, update, validate ...)
  44         static DbSchemaValidation hbm2dll = DbSchemaValidation.CREATE;
  45         static final String tcsSource = TcsSources.arecaceae_local();
  46         static final ICdmDataSource cdmDestination = CdmDestinations.localH2Palmae();
  47
  48         public static final UUID featureTreeUuid = UUID.fromString("72ccce05-7cc8-4dab-8e47-bf3f5fd848a0");
  49
  50         static final UUID treeUuid = UUID.fromString("1adb71d4-cce6-45e1-b578-e668778d9ec6");
  51         static final UUID secUuid = UUID.fromString("5f32b8af-0c97-48ac-8d33-6099ed68c625");
  52         static final String sourceSecId = "palm_pub_ed_999999";
  53         static final boolean pubishReferencesInBibliography = false;
  54
  55         //should the other imports run as well?
  56         static final boolean includeTaxonX = true;
  57         static final boolean includeImages = true;
  58         static final boolean includeExcelProtologue = true;
  59         static final boolean includeMediaProtologue = true;
  60         static final boolean updateFeatureTree = true;
  61
  62         //check - import
  63         static final CHECK check = CHECK.CHECK_AND_IMPORT;
  64
  65         static boolean useTaxonomicTree = true;
  66
  67         //authors
  68         static final boolean doAuthors = true;
  69         //references
  70         static final DO_REFERENCES doReferences =  DO_REFERENCES.ALL;
  71         //names
  72         static final boolean doTaxonNames = true;
  73         static final boolean doRelNames = true;
  74
  75         //taxa
  76         static final boolean doTaxa = true;
  77         static final boolean doRelTaxa = true;
  78         static final boolean doFacts = true;
  79
  80
  81         private boolean doImport(){
  82                 boolean success = true;
  83                 System.out.println("Start import from Tcs("+ tcsSource.toString() + ") ...");
  84
  85                 //make BerlinModel Source
  86                 String source = tcsSource;
  87                 ICdmDataSource destination = cdmDestination;
  88
  89                 TcsRdfImportConfigurator tcsImportConfigurator = TcsRdfImportConfigurator.NewInstance(source,  destination);
  90
  91                 tcsImportConfigurator.setTreeUuid(treeUuid);
  92                 tcsImportConfigurator.setSecUuid(secUuid);
  93                 tcsImportConfigurator.setSourceSecId(sourceSecId);
  94
  95                 tcsImportConfigurator.setDoAuthors(doAuthors);
  96                 tcsImportConfigurator.setDoReferences(doReferences);
  97                 tcsImportConfigurator.setDoTaxonNames(doTaxonNames);
  98                 tcsImportConfigurator.setDoRelNames(doRelNames);
  99
 100                 tcsImportConfigurator.setDoTaxa(doTaxa);
 101                 tcsImportConfigurator.setDoRelTaxa(doRelTaxa);
 102                 tcsImportConfigurator.setDoFacts(doFacts);
 103                 tcsImportConfigurator.setUseTaxonomicTree(useTaxonomicTree);
 104                 tcsImportConfigurator.setPublishReferences(pubishReferencesInBibliography);
 105
 106                 tcsImportConfigurator.setCheck(check);
 107                 tcsImportConfigurator.setDbSchemaValidation(hbm2dll);
 108
 109                 // invoke import
 110                 CdmDefaultImport<TcsRdfImportConfigurator> tcsImport = new CdmDefaultImport<TcsRdfImportConfigurator>();
 111                 //new Test().invoke(tcsImportConfigurator);
 112                 success &= tcsImport.invoke(tcsImportConfigurator);
 113
 114                 //make feature tree
 115                 logger.info("Make feature tree");
 116                 CdmApplicationController app = tcsImport.getCdmAppController();
 117
 118                 FeatureTree tree = getFeatureTree();
 119                 app.getDescriptionService().saveFeatureTree(tree);
 120                 System.out.println("End import from TCS ("+ source.toString() + ")...");
 121
 122                 return success;
 123         }
 124
 125
 126         private FeatureTree getFeatureTree(){
 127
 128                 FeatureTree result = FeatureTree.NewInstance(featureTreeUuid);
 129                 FeatureNode root = result.getRoot();
 130
 131                 FeatureNode newNode;
 132                 newNode = FeatureNode.NewInstance(Feature.INTRODUCTION());
 133                 root.addChild(newNode);
 134                 newNode = FeatureNode.NewInstance(Feature.DISTRIBUTION());
 135                 root.addChild(newNode);
 136                 newNode = FeatureNode.NewInstance(Feature.BIOLOGY_ECOLOGY());
 137                 root.addChild(newNode);
 138                 newNode = FeatureNode.NewInstance(Feature.CONSERVATION());
 139                 root.addChild(newNode);
 140                 newNode = FeatureNode.NewInstance(Feature.COMMON_NAME());
 141                 root.addChild(newNode);
 142                 newNode = FeatureNode.NewInstance(Feature.ETYMOLOGY());
 143                 root.addChild(newNode);
 144                 newNode = FeatureNode.NewInstance(Feature.USES());
 145                 root.addChild(newNode);
 146                 newNode = FeatureNode.NewInstance(Feature.CULTIVATION());
 147                 root.addChild(newNode);
 148                 // "anatomy", "fossil record" "relationships"
 149                 //for future
 150                 newNode = FeatureNode.NewInstance(Feature.DISCUSSION());
 151                 root.addChild(newNode);
 152                 newNode = FeatureNode.NewInstance(Feature.DIAGNOSIS());
 153                 root.addChild(newNode);
 154                 newNode = FeatureNode.NewInstance(Feature.DESCRIPTION());
 155                 root.addChild(newNode);
 156                 newNode = FeatureNode.NewInstance(Feature.MATERIALS_EXAMINED());
 157                 root.addChild(newNode);
 158                 newNode = FeatureNode.NewInstance(Feature.ANATOMY());
 159                 root.addChild(newNode);
 160                 return result;
 161
 162
 163         }
 164
 165         /**
 166          * @param args
 167          */
 168         public static void main(String[] args) {
 169                 boolean success = true;
 170
 171                 logger.debug("start");
 172
 173                 PalmaeActivator me = new PalmaeActivator();
 174                 me.doImport();
 175
 176                 if (includeImages){
 177                         System.out.println("Start importing images ...");
 178                         CdmDefaultImport<IImportConfigurator> imageImporter = new CdmDefaultImport<IImportConfigurator>();
 179                         ImageImportConfigurator imageConfigurator = ImageImportConfigurator.NewInstance(
 180                                         PalmaeImageActivator.sourceFolder, cdmDestination, PalmaeImageImport.class);
 181                         imageConfigurator.setSecUuid(secUuid);
 182                         success &= imageImporter.invoke(imageConfigurator);
 183                         System.out.println("End importing images ...");
 184                 }
 185
 186                 if (includeExcelProtologue){
 187                         System.out.println("Start importing protologues ...");
 188                         ImageImportConfigurator imageConfigurator = ImageImportConfigurator.NewInstance(
 189                                         PalmaeExcelProtologueActivator.sourceFile, cdmDestination, PalmaeProtologueImport.class);
 190                         imageConfigurator.setSecUuid(secUuid);
 191
 192                         CdmDefaultImport<IImportConfigurator> imageImporter = new CdmDefaultImport<IImportConfigurator>();
 193                         imageImporter.invoke(imageConfigurator);
 194                         System.out.println("End importing protologues ...");
 195                 }
 196                 if (includeMediaProtologue){
 197                         System.out.println("Start importing protologues from \\\\media...");
 198                         String protologueSource = "\\\\media\\EditWP6\\palmae\\protologe";
 199                         String urlString = "http://wp5.e-taxonomy.eu/media/palmae/protologe/";
 200                         File source = new File (protologueSource);
 201
 202                         PalmaeProtologueImportConfigurator protologConfig = PalmaeProtologueImportConfigurator.NewInstance(protologueSource, cdmDestination, urlString);
 203                         CdmDefaultImport<IImportConfigurator> cdmImport = new CdmDefaultImport<IImportConfigurator>();
 204
 205                         //protologConfig.setDoFacts(doDescriptions);
 206                         protologConfig.setCheck(check);
 207                         protologConfig.setDbSchemaValidation(DbSchemaValidation.UPDATE);
 208
 209                         protologConfig.setSource(source);
 210                         success &= cdmImport.invoke(protologConfig);
 211
 212                         System.out.println("End importing protologues ...");
 213                 }
 214
 215                 if (includeTaxonX){
 216                         System.out.println("Start importing taxonX ...");
 217                         PalmaeTaxonXImportActivator taxonXimporter = new PalmaeTaxonXImportActivator();
 218                         PalmaeTaxonXImportActivator.cdmDestination = cdmDestination;
 219                         success &= taxonXimporter.runImport();
 220                         System.out.println("End importing taxonX ...");
 221                 }
 222
 223                 PalmaeFeatureTreeUpdater updater = new PalmaeFeatureTreeUpdater();
 224                 if (updateFeatureTree){
 225                         updater.updateMissingFeatures(cdmDestination);
 226                 }
 227
 228                 String strSuccess = "";
 229                 if (success == false){
 230                         strSuccess = "not ";
 231                 }
 232                 System.out.println("Import " + strSuccess + "successful");
 233
 234         }
 235
 236 }