app-import/src/main/java/eu/etaxonomy/cdm/app/wp6/cichorieae/CichorieaeActivator.java

   1 /**
   2 * Copyright (C) 2007 EDIT
   3 * European Distributed Institute of Taxonomy
   4 * http://www.e-taxonomy.eu
   5 *
   6 * The contents of this file are subject to the Mozilla Public License Version 1.1
   7 * See LICENSE.TXT at the top of this package for the full license terms.
   8 */
   9
  10 package eu.etaxonomy.cdm.app.wp6.cichorieae;
  11
  12 import java.io.File;
  13 import java.util.UUID;
  14
  15 import org.apache.log4j.Logger;
  16
  17 import eu.etaxonomy.cdm.api.application.CdmApplicationController;
  18 import eu.etaxonomy.cdm.app.berlinModelImport.BerlinModelSources;
  19 import eu.etaxonomy.cdm.app.berlinModelImport.TreeCreator;
  20 import eu.etaxonomy.cdm.app.common.CdmDestinations;
  21 import eu.etaxonomy.cdm.database.DbSchemaValidation;
  22 import eu.etaxonomy.cdm.database.ICdmDataSource;
  23 import eu.etaxonomy.cdm.io.berlinModel.BerlinModelImportConfigurator;
  24 import eu.etaxonomy.cdm.io.common.CdmDefaultImport;
  25 import eu.etaxonomy.cdm.io.common.Source;
  26 import eu.etaxonomy.cdm.io.common.IImportConfigurator.CHECK;
  27 import eu.etaxonomy.cdm.io.common.IImportConfigurator.DO_REFERENCES;
  28 import eu.etaxonomy.cdm.model.common.ISourceable;
  29 import eu.etaxonomy.cdm.model.description.Feature;
  30 import eu.etaxonomy.cdm.model.description.FeatureNode;
  31 import eu.etaxonomy.cdm.model.description.FeatureTree;
  32 import eu.etaxonomy.cdm.model.name.NomenclaturalCode;
  33 import eu.etaxonomy.cdm.model.name.ZoologicalName;
  34
  35
  36 /**
  37  * TODO add the following to a wiki page:
  38  * HINT: If you are about to import into a mysql data base running under windows and if you wish to dump and restore the resulting data bas under another operation systen
  39  * you must set the mysql system variable lower_case_table_names = 0 in order to create data base with table compatible names.
  40  *
  41  *
  42  * @author a.mueller
  43  *
  44  */
  45 public class CichorieaeActivator {
  46         private static final Logger logger = Logger.getLogger(CichorieaeActivator.class);
  47
  48         //database validation status (create, update, validate ...)
  49         static DbSchemaValidation hbm2dll = DbSchemaValidation.CREATE;
  50         static final Source berlinModelSource = BerlinModelSources.EDIT_CICHORIEAE();
  51         static final ICdmDataSource cdmDestination = CdmDestinations.cdm_test_andreasK2();
  52
  53         static final UUID secUuid = UUID.fromString("6924c75d-e0d0-4a6d-afb7-3dd8c71195ca");
  54         static final int sourceSecId = 7800000;
  55
  56         static final UUID featureTreeUuid = UUID.fromString("ae9615b8-bc60-4ed0-ad96-897f9226d568");
  57         static final Object[] featureKeyList = new Integer[]{1, 31, 4, 98};
  58
  59         static final String mediaUrlString = "http://wp5.e-taxonomy.eu/dataportal/cichorieae/media/protolog/";
  60         //Mac
  61         //static final File mediaPath = new File("/Volumes/protolog/protolog/");
  62         //Windows
  63         static final File mediaPath = new File("\\\\Bgbm11\\Edit-WP6\\protolog");
  64         // set to zero for unlimited nameFacts
  65         static final int maximumNumberOfNameFacts = 0;
  66
  67
  68         //check - import
  69         static final CHECK check = CHECK.CHECK_AND_IMPORT;
  70
  71         //NomeclaturalCode
  72         static final NomenclaturalCode nomenclaturalCode = NomenclaturalCode.ICBN;
  73
  74         //ignore null
  75         static final boolean ignoreNull = true;
  76
  77
  78 // **************** ALL *********************
  79         //authors
  80         static final boolean doAuthors = true;
  81         //references
  82         static final DO_REFERENCES doReferences =  DO_REFERENCES.ALL;
  83         //names
  84         static final boolean doTaxonNames = true;
  85         static final boolean doRelNames = true;
  86         static final boolean doNameStatus = true;
  87         static final boolean doTypes = true;
  88         static final boolean doNameFacts = true;
  89
  90         //taxa
  91         static final boolean doTaxa = true;
  92         static final boolean doRelTaxa = true;
  93         static final boolean doFacts = true;
  94         static final boolean doOccurences = true;
  95
  96
  97 // **************** SELECTED *********************
  98
  99 //      //authors
 100 //      static final boolean doAuthors = false;
 101 //      //references
 102 //      static final DO_REFERENCES doReferences =  DO_REFERENCES.NONE;
 103 //      //names
 104 //      static final boolean doTaxonNames = false;
 105 //      static final boolean doRelNames = false;
 106 //      static final boolean doNameStatus = false;
 107 //      static final boolean doTypes = false;
 108 //      static final boolean doNameFacts = false;
 109 //
 110 //      //taxa
 111 //      static final boolean doTaxa = false;
 112 //      static final boolean doRelTaxa = false;
 113 //      static final boolean doFacts = false;
 114 //      static final boolean doOccurences = false;
 115
 116         /**
 117          * @param args
 118          */
 119         public static void main(String[] args) {
 120                 System.out.println("Start import from BerlinModel("+ berlinModelSource.getDatabase() + ") to " + cdmDestination.getDatabase() + " ...");
 121
 122                 //make BerlinModel Source
 123                 Source source = berlinModelSource;
 124                 ICdmDataSource destination = cdmDestination;
 125
 126                 BerlinModelImportConfigurator bmImportConfigurator = BerlinModelImportConfigurator.NewInstance(source,  destination);
 127
 128                 bmImportConfigurator.setSecUuid(secUuid);
 129                 bmImportConfigurator.setSourceSecId(sourceSecId);
 130
 131                 bmImportConfigurator.setNomenclaturalCode(nomenclaturalCode);
 132
 133                 bmImportConfigurator.setIgnoreNull(ignoreNull);
 134                 bmImportConfigurator.setDoAuthors(doAuthors);
 135                 bmImportConfigurator.setDoReferences(doReferences);
 136                 bmImportConfigurator.setDoTaxonNames(doTaxonNames);
 137                 bmImportConfigurator.setDoRelNames(doRelNames);
 138                 bmImportConfigurator.setDoNameStatus(doNameStatus);
 139                 bmImportConfigurator.setDoTypes(doTypes);
 140                 bmImportConfigurator.setDoNameFacts(doNameFacts);
 141
 142                 bmImportConfigurator.setDoTaxa(doTaxa);
 143                 bmImportConfigurator.setDoRelTaxa(doRelTaxa);
 144                 bmImportConfigurator.setDoFacts(doFacts);
 145                 bmImportConfigurator.setDoOccurrence(doOccurences);
 146                 bmImportConfigurator.setDbSchemaValidation(hbm2dll);
 147
 148                 // mediaResourceLocations
 149                 if ( mediaPath.exists() && mediaPath.isDirectory()){
 150                         bmImportConfigurator.setMediaUrl(mediaUrlString);
 151                         bmImportConfigurator.setMediaPath(mediaPath);
 152                 }else{
 153                         logger.warn("Could not configure mediaResourceLocations");
 154                 }
 155
 156                 // maximum number of name facts to import
 157                 bmImportConfigurator.setMaximumNumberOfNameFacts(maximumNumberOfNameFacts);
 158
 159
 160                 bmImportConfigurator.setCheck(check);
 161
 162                 // invoke import
 163                 CdmDefaultImport<BerlinModelImportConfigurator> bmImport = new CdmDefaultImport<BerlinModelImportConfigurator>();
 164                 bmImport.invoke(bmImportConfigurator);
 165
 166                 if (doFacts && bmImportConfigurator.getCheck().equals(CHECK.CHECK_AND_IMPORT)  || bmImportConfigurator.getCheck().equals(CHECK.IMPORT_WITHOUT_CHECK)    ){
 167                         CdmApplicationController app = bmImport.getCdmApp();
 168                         ISourceable obj = app.getCommonService().getSourcedObjectByIdInSource(ZoologicalName.class, "1000027", null);
 169                         logger.info(obj);
 170
 171                         //make feature tree
 172                         FeatureTree tree = TreeCreator.flatTree(featureTreeUuid, bmImportConfigurator.getFeatureMap(), featureKeyList);
 173                         FeatureNode imageNode = FeatureNode.NewInstance(Feature.IMAGE());
 174                         tree.getRoot().addChild(imageNode);
 175                         FeatureNode distributionNode = FeatureNode.NewInstance(Feature.DISTRIBUTION());
 176                         tree.getRoot().addChild(distributionNode, 2);
 177                         app.getDescriptionService().saveFeatureTree(tree);
 178                 }
 179
 180                 System.out.println("End import from BerlinModel ("+ source.getDatabase() + ")...");
 181         }
 182
 183 }