cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/erms/ErmsTransformer.java

   1 // $Id$
   2 /**
   3 * Copyright (C) 2007 EDIT
   4 * European Distributed Institute of Taxonomy
   5 * http://www.e-taxonomy.eu
   6 *
   7 * The contents of this file are subject to the Mozilla Public License Version 1.1
   8 * See LICENSE.TXT at the top of this package for the full license terms.
   9 */
  10
  11 package eu.etaxonomy.cdm.io.erms;
  12
  13 import java.util.HashSet;
  14 import java.util.Set;
  15 import java.util.UUID;
  16
  17 import org.apache.log4j.Logger;
  18
  19 import eu.etaxonomy.cdm.common.CdmUtils;
  20 import eu.etaxonomy.cdm.io.common.mapping.InputTransformerBase;
  21 import eu.etaxonomy.cdm.io.common.mapping.UndefinedTransformerMethodException;
  22 import eu.etaxonomy.cdm.model.common.ExtensionType;
  23 import eu.etaxonomy.cdm.io.common.mapping.InputTransformerBase;
  24 import eu.etaxonomy.cdm.io.common.mapping.UndefinedTransformerMethodException;
  25 import eu.etaxonomy.cdm.model.common.Language;
  26 import eu.etaxonomy.cdm.model.description.Feature;
  27 import eu.etaxonomy.cdm.model.name.NameTypeDesignationStatus;
  28 import eu.etaxonomy.cdm.model.name.NomenclaturalCode;
  29
  30 /**
  31  * @author a.mueller
  32  * @created 01.03.2010
  33  * @version 1.0
  34  */
  35 public final class ErmsTransformer extends InputTransformerBase {
  36         private static final Logger logger = Logger.getLogger(ErmsTransformer.class);
  37
  38         public static final int SOURCE_USE_ORIGINAL_DESCRIPTION = 1;
  39         public static final int SOURCE_USE_BASIS_OF_RECORD = 2;
  40         public static final int SOURCE_USE_ADDITIONAL_SOURCE = 3;
  41         public static final int SOURCE_USE_SOURCE_OF_SYNONYMY = 4;
  42         public static final int SOURCE_USE_REDESCRIPTION = 5;
  43         public static final int SOURCE_USE_NEW_COMBINATION_REFERENCE = 6;
  44         public static final int SOURCE_USE_STATUS_SOURCE = 7;
  45         public static final int SOURCE_USE_EMENDATION = 8;
  46
  47         //language uuids
  48         public static final UUID uuidEuropeanMarineWaters = UUID.fromString("47389e42-3b3c-4873-bded-ac030db86462");
  49         public static final UUID uuidMediterraneanSea = UUID.fromString("bde8a624-23c4-4ac3-b381-11287f5d656a");
  50         public static final UUID uuidWhiteSea = UUID.fromString("bf14bfb6-8925-4696-911c-56d3e90d4491");
  51         public static final UUID uuidNorthSea = UUID.fromString("d5ea2d46-ed97-4996-8702-0619231626b6");
  52         public static final UUID uuidBalticSea = UUID.fromString("0031cda2-4b27-49de-afa3-fdec75ee5060");
  53         public static final UUID uuidBlackSea = UUID.fromString("1f110909-7462-4ee8-a7ff-9f976701dd1d");
  54         public static final UUID uuidBarentsSea = UUID.fromString("b6fd9a4d-0ad0-4481-a0b4-5dd71c8fda8b");
  55         public static final UUID uuidCaspianSea = UUID.fromString("0d3c3850-0cec-48d0-ac0d-9cbcc2c60552");
  56         public static final UUID uuidPortugueseExclusiveEconomicZone = UUID.fromString("642336f3-41cb-4546-9a1c-ffeccbad2ef5");
  57         public static final UUID uuidBelgianExclusiveEconomicZone = UUID.fromString("02138b0f-cee1-4c56-ae12-72a5b36839af");
  58         public static final UUID uuidFrenchExclusiveEconomicZone = UUID.fromString("9f6a61c0-c329-4a61-a47a-f5f383737c36");
  59         public static final UUID uuidEnglishChannel = UUID.fromString("3ed96112-bb4a-47df-b489-2c198d6f0fd2");
  60         public static final UUID uuidAdriaticSea = UUID.fromString("da376165-f970-4f0c-99db-773686d66591");
  61         public static final UUID uuidBiscayBay = UUID.fromString("1461cf85-e0b4-4ac3-bdf5-efe6053af174");
  62         public static final UUID uuidDutchExclusiveEconomicZone = UUID.fromString("a1bd019e-e2af-41c8-a5e4-c7245b575759");
  63         public static final UUID uuidUnitedKingdomExclusiveEconomicZone = UUID.fromString("18ab29c0-3104-4102-ada8-6711fcdbdbb8");
  64         public static final UUID uuidSpanishExclusiveEconomicZone = UUID.fromString("68c2823a-2173-4c31-89e8-bc1439abf448");
  65         public static final UUID uuidEgyptianExclusiveEconomicZone = UUID.fromString("e542bcfd-0ff1-49ac-a6ae-c0b3db39e560");
  66         public static final UUID uuidGrecianExclusiveEconomicZone = UUID.fromString("1d14857c-30be-4d3a-bae9-8e79da0d9d1d");
  67         public static final UUID uuidTirrenoSea = UUID.fromString("6e4f8a9d-ca6e-4b23-9211-446fac35a052");
  68         public static final UUID uuidIcelandicExclusiveEconomicZone = UUID.fromString("a121a8fb-6287-4661-9228-0816affdf3f5");
  69         public static final UUID uuidIrishExclusiveeconomicZone = UUID.fromString("c8fe2626-53d2-4eaa-962b-99662470b96e");
  70         public static final UUID uuidIrishSea = UUID.fromString("9e972ad5-b153-419e-ab7e-935b93ff881b");
  71         public static final UUID uuidItalianExclusiveEconomicZone = UUID.fromString("10557c6f-a33f-443a-ad8b-cd31c105bddd");
  72         public static final UUID uuidNorwegianSea = UUID.fromString("c6c44372-a963-41b2-8c12-a0b46425c523");
  73         public static final UUID uuidMoroccanExclusiveEconomicZone = UUID.fromString("e62e5cc2-922f-4807-abd6-1b4bffbced49");
  74         public static final UUID uuidNorwegianExclusiveEconomicZone = UUID.fromString("bd317f3e-9719-4943-ae3e-19ff0c9761be");
  75         public static final UUID uuidSkagerrak = UUID.fromString("5f63ece2-d112-4b39-80a0-bffb6c78654c");
  76         public static final UUID uuidTunisianExclusiveEconomicZone = UUID.fromString("b5972b59-6a36-45ea-88f7-0c520c99b99d");
  77         public static final UUID uuidWaddenSea = UUID.fromString("ae0c4555-8e19-479d-8a4f-e1b62939c09b");
  78         public static final UUID uuidBeltSea = UUID.fromString("780f4144-f157-45e8-ae42-cacb3ec369ba");
  79         public static final UUID uuidMarmaraSea = UUID.fromString("3db5d470-3265-4187-ba5a-01ecfb94ce6e");
  80         public static final UUID uuidSeaofAzov = UUID.fromString("5b02cb7e-8a83-446c-af47-936a2ea31a8a");
  81         public static final UUID uuidAegeanSea = UUID.fromString("65d6c443-225f-4ac0-9c86-da51502b46df");
  82         public static final UUID uuidBulgarianExclusiveEconomicZone = UUID.fromString("13e5aa21-3971-4d06-bc34-ed75a31c2f66");
  83         public static final UUID uuidSouthBalticproper = UUID.fromString("1c2a672d-4948-455d-9877-42a8da1ff1d0");
  84         public static final UUID uuidBalticProper = UUID.fromString("12ddfcad-bf8f-43d8-a772-15ae69d37b20");
  85         public static final UUID uuidNorthBalticproper = UUID.fromString("183ec305-1e9e-4cb1-93cc-703bd64de28f");
  86         public static final UUID uuidArchipelagoSea = UUID.fromString("d9ea9d63-ec4d-4b01-967d-13f28b09a715");
  87         public static final UUID uuidBothnianSea = UUID.fromString("926f7fa3-b0a4-4763-85eb-4c3804a72333");
  88         public static final UUID uuidGermanExclusiveEconomicZone = UUID.fromString("a6dbea03-090f-4f5f-bf5e-27a00ab4cc1d");
  89         public static final UUID uuidSwedishExclusiveEconomicZone = UUID.fromString("94b0e605-d241-44e1-a301-d8911c34fdef");
  90         public static final UUID uuidUkrainianExclusiveEconomicZone = UUID.fromString("b7335968-e34f-412c-91a5-5dc0b73310e7");
  91         public static final UUID uuidMadeiranExclusiveEconomicZone = UUID.fromString("c00f442a-4c08-4452-b979-825fa3ff97b2");
  92         public static final UUID uuidLebaneseExclusiveEconomicZone = UUID.fromString("d9f7dc8b-9041-4206-bf5f-5226c42a5978");
  93         public static final UUID uuidSpanishExclusiveEconomicZoneMediterraneanpart = UUID.fromString("94ccf304-9687-41b6-a14b-019509adb723");
  94         public static final UUID uuidEstonianExclusiveEconomicZone = UUID.fromString("ed17f07b-357f-4b4a-9653-3a564fdd32e5");
  95         public static final UUID uuidCroatianExclusiveEconomicZone = UUID.fromString("028b045a-b1bd-4a72-a4c2-a3d0473b8257");
  96         public static final UUID uuidBalearSea = UUID.fromString("478f30f0-01b1-4772-9d01-3a0a571f41c3");
  97         public static final UUID uuidTurkishExclusiveEconomicZone = UUID.fromString("3d552e73-2bf5-4f36-8a91-94fbead970e5");
  98         public static final UUID uuidDanishExclusiveEconomicZone = UUID.fromString("53d5a8bd-804b-4cbb-b5ad-f47ff6433db0");
  99
 100
 101         //feature uuids
 102         public static final UUID uuidRemark = UUID.fromString("648eab77-8469-4139-bbf4-3fb26ec15864");
 103         public static final UUID uuidAdditionalinformation = UUID.fromString("ef00c304-ce33-45ef-9543-0b9336a2b6eb");
 104         public static final UUID uuidSpelling = UUID.fromString("536594a1-21a5-4d99-aa46-132bc7b31316");
 105         public static final UUID uuidPublicationdate = UUID.fromString("b996b34f-1313-4575-bf46-732676674290");
 106         public static final UUID uuidSystematics = UUID.fromString("caac0f7f-f43e-4b7c-b296-ec2d930c4d05");
 107         public static final UUID uuidClassification = UUID.fromString("aa9bffd3-1fa8-4bd7-9e25-e2d162177b3d");
 108         public static final UUID uuidEnvironment = UUID.fromString("4f8ea10d-2242-443f-9d7d-4ecccdee4953");
 109         public static final UUID uuidHabitat = UUID.fromString("b7387877-51e3-4192-b9e4-025a359f4b59");
 110         public static final UUID uuidAuthority = UUID.fromString("9c7f8908-2530-4900-8da9-d328f7ac9031");
 111         public static final UUID uuidMorphology = UUID.fromString("5be1f948-d85f-497f-a0d5-4e5f3b227274");
 112         public static final UUID uuidTaxonomicRemarks = UUID.fromString("cc863aee-8da9-448b-82cd-47e3af942998");
 113         public static final UUID uuidNote = UUID.fromString("2c66d35f-c76e-40e0-951b-f2c340e5973f");
 114         public static final UUID uuidTaxonomy = UUID.fromString("d5734631-c86b-4212-9b8d-cb62f813e0a0");
 115         public static final UUID uuidTaxonomicstatus = UUID.fromString("ffbadab5-a8bc-4fb6-a6b3-d1f2593187ff");
 116         public static final UUID uuidStatus = UUID.fromString("fcc50853-bcff-4d0f-bc9a-123d7f175490");
 117         public static final UUID uuidRank = UUID.fromString("cabada57-a098-47fc-929f-31c8c910f6cf");
 118         public static final UUID uuidHomonymy = UUID.fromString("2791a14f-49b2-417f-a248-84c3d022d75f");
 119         public static final UUID uuidNomenclature = UUID.fromString("15fe184f-4aab-4076-8bbb-3415d6f1f27f");
 120         public static final UUID uuidTypespecies = UUID.fromString("cf674b0d-76e2-4628-952c-2cd06e209c6e");
 121         public static final UUID uuidTaxonomicRemark = UUID.fromString("044e7c4e-aab8-4f44-bfa5-0339e7576c74");
 122         public static final UUID uuidDateofPublication = UUID.fromString("2a416574-69db-4f80-b9a7-b912d5ed1816");
 123         public static final UUID uuidAcknowledgments = UUID.fromString("3b2fd495-3f9a-480e-986a-7643741177da");
 124         public static final UUID uuidOriginalpublication = UUID.fromString("ea9b7e53-0487-499f-a281-3d82d10e76dd");
 125         public static final UUID uuidTypelocality = UUID.fromString("7c1c5779-2b4b-467b-b2ca-5ca2e029e116");
 126         public static final UUID uuidValidity = UUID.fromString("bd066f25-935b-4b4e-a2eb-3fbfcd5e608f");
 127         public static final UUID uuidIdentification = UUID.fromString("dec3cd5b-0690-4035-825d-bda9aee96bc1");
 128         public static final UUID uuidSynonymy = UUID.fromString("f5c8be5f-8d33-47df-838e-55fc7999fc81");
 129
 130         //extension type uuids
 131         public static final UUID GAZETTEER_UUID = UUID.fromString("dcfa124a-1028-49cd-aea5-fdf9bd396c1a");
 132         public static final UUID IMIS_UUID = UUID.fromString("ee2ac2ca-b60c-4e6f-9cad-720fcdb0a6ae");
 133         public static final UUID uuidFossilStatus = UUID.fromString("ec3dffbe-a0c8-4d76-845f-5fc166a33d5b");
 134         public static final UUID uuidTsn = UUID.fromString("6b0df02b-7278-4ce0-8fc9-0e6523832eb5");
 135         public static final UUID uuidDisplayName = UUID.fromString("cd72225d-32c7-4b2d-a973-a95184392690");
 136         public static final UUID uuidFuzzyName = UUID.fromString("8870dc69-d3a4-425f-a5a8-093a79f527a8");
 137         public static final UUID uuidCredibility = UUID.fromString("909a3886-8744-49dc-b9cc-277378b81b42");
 138         public static final UUID uuidCompleteness = UUID.fromString("141f4816-78c0-4da1-8a79-5c9031e6b149");
 139         public static final UUID uuidUnacceptReason = UUID.fromString("3883fb79-374d-4120-964b-9666307e3567");
 140         public static final UUID uuidQualityStatus = UUID.fromString("4de84c6e-41bd-4a0e-894d-77e9ec3103d2");
 141
 142
 143         public static NomenclaturalCode kingdomId2NomCode(Integer kingdomId){
 144                 switch (kingdomId){
 145                         case 1: return null;
 146                         case 2: return NomenclaturalCode.ICZN;  //Animalia
 147                         case 3: return NomenclaturalCode.ICBN;  //Plantae
 148                         case 4: return NomenclaturalCode.ICBN;  //Fungi
 149                         case 5: return NomenclaturalCode.ICZN ;  //Protozoa
 150                         case 6: return NomenclaturalCode.ICNB ;  //Bacteria
 151                         case 7: return NomenclaturalCode.ICBN;  //Chromista
 152                         case 147415: return NomenclaturalCode.ICNB;  //Monera
 153                         default: return null;
 154
 155                 }
 156
 157         }
 158
 159
 160
 161
 162         /* (non-Javadoc)
 163          * @see eu.etaxonomy.cdm.io.common.mapping.InputTransformerBase#getNameTypeDesignationStatusByKey(java.lang.String)
 164          */
 165         @Override
 166         public NameTypeDesignationStatus getNameTypeDesignationStatusByKey(String key) throws UndefinedTransformerMethodException {
 167                 if (key == null){
 168                         return null;
 169                 }
 170                 Integer intDesignationId = Integer.valueOf(key);
 171                 switch (intDesignationId){
 172                         case 1: return NameTypeDesignationStatus.ORIGINAL_DESIGNATION();
 173                         case 2: return NameTypeDesignationStatus.SUBSEQUENT_DESIGNATION();
 174                         case 3: return NameTypeDesignationStatus.MONOTYPY();
 175                         default:
 176                                 String warning = "Unknown name type designation status id " + key;
 177                                 logger.warn(warning);
 178                                 return null;
 179                 }
 180         }
 181
 182
 183
 184
 185         /* (non-Javadoc)
 186          * @see eu.etaxonomy.cdm.io.common.mapping.InputTransformerBase#getNameTypeDesignationStatusUuid(java.lang.String)
 187          */
 188         @Override
 189         public UUID getNameTypeDesignationStatusUuid(String key) throws UndefinedTransformerMethodException {
 190                 //nott needed
 191                 return super.getNameTypeDesignationStatusUuid(key);
 192         }
 193
 194
 195         public Language getLanguageByKey(String ermsAbbrev) throws IllegalArgumentException {
 196                 Set<String> unhandledLanguages = new HashSet<String>();
 197                 if (CdmUtils.isEmpty(ermsAbbrev)){return null;
 198                 }else if (ermsAbbrev.equals("af")){return Language.AFRIKAANS();
 199                 }else if (ermsAbbrev.equals("al")){return Language.ALEUT();
 200                 }else if (ermsAbbrev.equals("ar")){return Language.ARABIC();
 201                 }else if (ermsAbbrev.equals("as")){return Language.ASSAMESE();
 202 //              }else if (ermsAbbrev.equals("au")){return Language.AUNS();  //??
 203                 }else if (ermsAbbrev.equals("az")){return Language.AZERBAIJANI();
 204                 }else if (ermsAbbrev.equals("ba")){return Language.BASQUE();
 205                 }else if (ermsAbbrev.equals("be")){return Language.BELORUSSIAN();
 206                 }else if (ermsAbbrev.equals("bg")){return Language.BULGARIAN();
 207                 }else if (ermsAbbrev.equals("bn")){return Language.BENGALI();
 208                 }else if (ermsAbbrev.equals("br")){return Language.BRETON();
 209                 }else if (ermsAbbrev.equals("bu")){return Language.BURMESE();
 210                 }else if (ermsAbbrev.equals("ca")){return Language.CATALAN_VALENCIAN();  //??? (Catalan)
 211                 }else if (ermsAbbrev.equals("ce")){return Language.CEBUANO();
 212                 }else if (ermsAbbrev.equals("ch")){return Language.CHINESE();
 213 //              }else if (ermsAbbrev.equals("cl")){return Language.CHUKCHI(); // (LOURAVETLANY)(); //iso639-3: ckt //also known as Luoravetlan, Chukot and Chukcha is a Palaeosiberian language spoken by Chukchi people in the easternmost extremity of Siberia, mainly in Chukotka Autonomous Okrug.
 214                 }else if (ermsAbbrev.equals("cr")){return Language.CROATIAN();
 215                 }else if (ermsAbbrev.equals("cs")){return Language.CZECH();
 216                 }else if (ermsAbbrev.equals("da")){return Language.DANISH();
 217                 }else if (ermsAbbrev.equals("de")){return Language.GERMAN();
 218 //              }else if (ermsAbbrev.equals("ec")){return Language.ENGLISH-CANADIAN();  //no iso
 219                 }else if (ermsAbbrev.equals("ee")){return Language.ESTONIAN();
 220 //              }else if (ermsAbbrev.equals("ek")){return Language.EVEN-KAMCHATKA(); //iso639-3: eve    Lamut, Ewen, Eben, Orich, Ilqan; Russian: ???´????? ???´?, earlier also ????????? ???´?) is a Tungusic language spoken by the Evens in Siberia
 221                 }else if (ermsAbbrev.equals("en")){return Language.ENGLISH();
 222                 }else if (ermsAbbrev.equals("ep")){return Language.ESPERANTO();
 223                 }else if (ermsAbbrev.equals("es")){return Language.SPANISH_CATALAN();
 224 //              }else if (ermsAbbrev.equals("eu")){return Language.ENGLISH-UNITED STATES();  no iso //ENGLISH();
 225 //              }else if (ermsAbbrev.equals("ev")){return Language.EVENKI();   iso: evn  //languages of Tungusic family
 226                 }else if (ermsAbbrev.equals("fa")){return Language.PERSIAN();
 227 //              }else if (ermsAbbrev.equals("fc")){return Language.FRENCH-CANADIAN();   no iso  //FRENCH();
 228                 }else if (ermsAbbrev.equals("fi")){return Language.FINNISH();
 229                 }else if (ermsAbbrev.equals("fj")){return Language.FIJIAN();
 230                 }else if (ermsAbbrev.equals("fl")){return Language.DUTCH_FLEMISH();
 231                 }else if (ermsAbbrev.equals("fo")){return Language.FAROESE();
 232                 }else if (ermsAbbrev.equals("fr")){return Language.FRENCH();
 233                 }else if (ermsAbbrev.equals("ga")){return Language.GAELIC_SCOTTISH_GAELIC();  //??
 234                 }else if (ermsAbbrev.equals("ge")){return Language.KALAALLISUT_GREENLANDIC(); // GREENLANDIC
 235                 }else if (ermsAbbrev.equals("gl")){return Language.GALICIAN();
 236                 }else if (ermsAbbrev.equals("gr")){return Language.GREEK_MODERN(); //(Greek)
 237 //              }else if (ermsAbbrev.equals("gu")){return Language.GUARAYO();     //GUARANI() ??
 238 //              }else if (ermsAbbrev.equals("ha")){return Language.HASSANYA(); Hassaniyya Arabic  ios 639-3: mey
 239                 }else if (ermsAbbrev.equals("he")){return Language.HEBREW();
 240                 }else if (ermsAbbrev.equals("hi")){return Language.HINDI();
 241                 }else if (ermsAbbrev.equals("hu")){return Language.HUNGARIAN();
 242                 }else if (ermsAbbrev.equals("hw")){return Language.HAWAIIAN();
 243                 }else if (ermsAbbrev.equals("hy")){return Language.ARMENIAN();
 244                 }else if (ermsAbbrev.equals("in")){return Language.INDONESIAN();
 245                 }else if (ermsAbbrev.equals("iq")){return Language.INUPIAQ();
 246                 }else if (ermsAbbrev.equals("ir")){return Language.IRISH();
 247                 }else if (ermsAbbrev.equals("is")){return Language.ICELANDIC();
 248                 }else if (ermsAbbrev.equals("it")){return Language.ITALIAN();
 249                 }else if (ermsAbbrev.equals("ja")){return Language.JAPANESE();
 250 //              }else if (ermsAbbrev.equals("ji")){return Language.JIVARA();            //??
 251 //              }else if (ermsAbbrev.equals("ka")){return Language.KAMCHADAL();   iso 639-3:itl //Itelmen, formerly also known as Kamchadal, is a language belonging to the Chukotko-Kamchatkan family traditionally spoken in the Kamchatka Peninsula.
 252                 }else if (ermsAbbrev.equals("ko")){return Language.KOREAN();
 253 //              }else if (ermsAbbrev.equals("kr")){return Language.KORYAK();    //iso639-3: kpy
 254                 }else if (ermsAbbrev.equals("la")){return Language.LATIN();
 255                 }else if (ermsAbbrev.equals("li")){return Language.LITHUANIAN();
 256 //              }else if (ermsAbbrev.equals("lp")){return Language.LAPP();      //??
 257                 }else if (ermsAbbrev.equals("lv")){return Language.LATVIAN();
 258                 }else if (ermsAbbrev.equals("ma")){return Language.MACEDONIAN();
 259 //              }else if (ermsAbbrev.equals("mh")){return Language.MAHR();   //Marathi ; Mari ??
 260 //              }else if (ermsAbbrev.equals("mk")){return Language.MAKAH (QWIQWIDICCIAT)();  //iso639-3: myh
 261                 }else if (ermsAbbrev.equals("ml")){return Language.MALAY();
 262 //              }else if (ermsAbbrev.equals("ne")){return Language.NENETS();   iso639-3 yrk; iso639-2: mis
 263                 }else if (ermsAbbrev.equals("nl")){return Language.DUTCH_FLEMISH();
 264                 }else if (ermsAbbrev.equals("no")){return Language.NORWEGIAN();
 265                 }else if (ermsAbbrev.equals("np")){return Language.NEPALI();
 266 //              }else if (ermsAbbrev.equals("os")){return Language.OSTYAK();   //Ostyak on its own or in combination, can refer, especially in older literature, to several Siberian peoples and languages:
 267                 //                                                                                                                              Khanty language (kca; 639-2: fiu); Ket language(ket); Selkup language(sel; 639-2: sel)
 268 //              }else if (ermsAbbrev.equals("pi")){return Language.PIRAYAGUARA();  //??
 269                 }else if (ermsAbbrev.equals("pl")){return Language.POLISH();
 270                 }else if (ermsAbbrev.equals("pt")){return Language.PORTUGUESE();
 271                 }else if (ermsAbbrev.equals("ro")){return Language.ROMANIAN();
 272                 }else if (ermsAbbrev.equals("ru")){return Language.RUSSIAN();
 273                 }else if (ermsAbbrev.equals("sc")){return Language.SCOTS();
 274                 }else if (ermsAbbrev.equals("sd")){return Language.SINDHI();
 275 //              }else if (ermsAbbrev.equals("sh")){return Language.SERBO_CROATIAN();  //hbs
 276                 }else if (ermsAbbrev.equals("si")){return Language.SINHALA_SINHALESE();
 277                 }else if (ermsAbbrev.equals("sk")){return Language.SLOVAK();
 278                 }else if (ermsAbbrev.equals("sn")){return Language.SLOVENIAN();
 279                 }else if (ermsAbbrev.equals("sr")){return Language.SERBIAN();
 280                 }else if (ermsAbbrev.equals("st")){return Language.SRANAN_TONGO();
 281                 }else if (ermsAbbrev.equals("sv")){return Language.SWEDISH();
 282                 }else if (ermsAbbrev.equals("sw")){return Language.SWAHILI();
 283                 }else if (ermsAbbrev.equals("ta")){return Language.TAMIL();
 284                 }else if (ermsAbbrev.equals("te")){return Language.TELUGU();
 285                 }else if (ermsAbbrev.equals("tg")){return Language.TAGALOG();
 286                 }else if (ermsAbbrev.equals("th")){return Language.THAI();
 287 //              }else if (ermsAbbrev.equals("tm")){return Language.TAMUL();                     //??
 288                 }else if (ermsAbbrev.equals("tr")){return Language.TURKISH();
 289                 }else if (ermsAbbrev.equals("tu")){return Language.TUPIS();
 290                 }else if (ermsAbbrev.equals("uk")){return Language.UKRAINIAN();
 291                 }else if (ermsAbbrev.equals("ur")){return Language.URDU();
 292                 }else if (ermsAbbrev.equals("vi")){return Language.VIETNAMESE();
 293                 }else if (ermsAbbrev.equals("we")){return Language.WELSH();
 294                 }else if (ermsAbbrev.equals("wo")){return Language.WOLOF();
 295                 }else if (ermsAbbrev.equals("ya")){return Language.YAKUT();
 296                 }else if (ermsAbbrev.equals("yp")){return Language.YUPIKS();
 297 //              }else if (ermsAbbrev.equals("yu")){return Language.YUKAGIR();  639-2: mis;  639-3 yux (Southern Yukaghir)- ykg(Tundra Yukaghir)
 298                 }else{
 299                         unhandledLanguages.add("au");
 300                         unhandledLanguages.add("cl");
 301                         unhandledLanguages.add("ec");
 302                         unhandledLanguages.add("ek");
 303                         unhandledLanguages.add("eu");
 304                         unhandledLanguages.add("ev");
 305                         unhandledLanguages.add("fc");
 306                         unhandledLanguages.add("gu");
 307                         unhandledLanguages.add("ha");
 308                         unhandledLanguages.add("ji");
 309                         unhandledLanguages.add("ka");
 310                         unhandledLanguages.add("kr");
 311                         unhandledLanguages.add("lp");
 312                         unhandledLanguages.add("mh");
 313                         unhandledLanguages.add("mk");
 314                         unhandledLanguages.add("ne");
 315                         unhandledLanguages.add("os");
 316                         unhandledLanguages.add("pi");
 317                         unhandledLanguages.add("sh");
 318                         unhandledLanguages.add("tm");
 319                         unhandledLanguages.add("sh");
 320                         unhandledLanguages.add("yu");
 321
 322                         if (unhandledLanguages.contains(ermsAbbrev)){
 323                                 logger.warn("Unhandled language '" + ermsAbbrev + "' replaced by 'UNDETERMINED'" );
 324                                 return Language.UNDETERMINED();
 325                         }
 326                         String warning = "New language abbreviation " + ermsAbbrev;
 327                         logger.warn(warning);
 328                         throw new IllegalArgumentException(warning);
 329                 }
 330
 331
 332
 333         }
 334
 335         /* (non-Javadoc)
 336          * @see eu.etaxonomy.cdm.io.common.mapping.InputTransformerBase#getLanguageUuid(java.lang.String)
 337          */
 338         @Override
 339         public UUID getLanguageUuid(String key)
 340                         throws UndefinedTransformerMethodException {
 341                 return super.getLanguageUuid(key);
 342         }
 343
 344
 345
 346
 347
 348
 349         /* (non-Javadoc)
 350          * @see eu.etaxonomy.cdm.io.common.mapping.InputTransformerBase#getExtensionTypeByKey(java.lang.String)
 351          */
 352         @Override
 353         public ExtensionType getExtensionTypeByKey(String key) throws UndefinedTransformerMethodException {
 354                 if (key == null){return null;
 355                 }
 356                 return null;
 357         }
 358
 359         /* (non-Javadoc)
 360          * @see eu.etaxonomy.cdm.io.common.mapping.InputTransformerBase#getExtensionTypeUuid(java.lang.String)
 361          */
 362         @Override
 363         public UUID getExtensionTypeUuid(String key)
 364                         throws UndefinedTransformerMethodException {
 365                 if (key == null){return null;
 366 //              }else if (key.equalsIgnoreCase("recent only")){return uuidRecentOnly;
 367 //              }else if (key.equalsIgnoreCase("recent + fossil")){return uuidRecentAndFossil;
 368 //              }else if (key.equalsIgnoreCase("fossil only")){return uuidFossilOnly;
 369                 }
 370                 return null;
 371         }
 372
 373         public static UUID uuidFromGuName(String guName){
 374                 if (CdmUtils.isEmpty(guName)){return null;
 375                 }else if (guName.equalsIgnoreCase("European Marine Waters")){ return uuidEuropeanMarineWaters;
 376                 }else if (guName.equalsIgnoreCase("Mediterranean Sea")){ return uuidMediterraneanSea;
 377                 }else if (guName.equalsIgnoreCase("White Sea")){ return uuidWhiteSea;
 378                 }else if (guName.equalsIgnoreCase("North Sea")){ return uuidNorthSea;
 379                 }else if (guName.equalsIgnoreCase("Baltic Sea")){ return uuidBalticSea;
 380                 }else if (guName.equalsIgnoreCase("Black Sea")){ return uuidBlackSea;
 381                 }else if (guName.equalsIgnoreCase("Barents Sea")){ return uuidBarentsSea;
 382                 }else if (guName.equalsIgnoreCase("Caspian Sea")){ return uuidCaspianSea;
 383                 }else if (guName.equalsIgnoreCase("Portuguese Exclusive Economic Zone")){ return uuidPortugueseExclusiveEconomicZone;
 384                 }else if (guName.equalsIgnoreCase("Belgian Exclusive Economic Zone")){ return uuidBelgianExclusiveEconomicZone;
 385                 }else if (guName.equalsIgnoreCase("French Exclusive Economic Zone")){ return uuidFrenchExclusiveEconomicZone;
 386                 }else if (guName.equalsIgnoreCase("English Channel")){ return uuidEnglishChannel;
 387                 }else if (guName.equalsIgnoreCase("Adriatic Sea")){ return uuidAdriaticSea;
 388                 }else if (guName.equalsIgnoreCase("Biscay Bay")){ return uuidBiscayBay;
 389                 }else if (guName.equalsIgnoreCase("Dutch Exclusive Economic Zone")){ return uuidDutchExclusiveEconomicZone;
 390                 }else if (guName.equalsIgnoreCase("United Kingdom Exclusive Economic Zone")){ return uuidUnitedKingdomExclusiveEconomicZone;
 391                 }else if (guName.equalsIgnoreCase("Spanish Exclusive Economic Zone")){ return uuidSpanishExclusiveEconomicZone;
 392                 }else if (guName.equalsIgnoreCase("Egyptian Exclusive Economic Zone")){ return uuidEgyptianExclusiveEconomicZone;
 393                 }else if (guName.equalsIgnoreCase("Grecian Exclusive Economic Zone")){ return uuidGrecianExclusiveEconomicZone;
 394                 }else if (guName.equalsIgnoreCase("Tirreno Sea")){ return uuidTirrenoSea;
 395                 }else if (guName.equalsIgnoreCase("Icelandic Exclusive Economic Zone")){ return uuidIcelandicExclusiveEconomicZone;
 396                 }else if (guName.equalsIgnoreCase("Irish Exclusive economic Zone")){ return uuidIrishExclusiveeconomicZone;
 397                 }else if (guName.equalsIgnoreCase("Irish Sea")){ return uuidIrishSea;
 398                 }else if (guName.equalsIgnoreCase("Italian Exclusive Economic Zone")){ return uuidItalianExclusiveEconomicZone;
 399                 }else if (guName.equalsIgnoreCase("Norwegian Sea")){ return uuidNorwegianSea;
 400                 }else if (guName.equalsIgnoreCase("Moroccan Exclusive Economic Zone")){ return uuidMoroccanExclusiveEconomicZone;
 401                 }else if (guName.equalsIgnoreCase("Norwegian Exclusive Economic Zone")){ return uuidNorwegianExclusiveEconomicZone;
 402                 }else if (guName.equalsIgnoreCase("Skagerrak")){ return uuidSkagerrak;
 403                 }else if (guName.equalsIgnoreCase("Tunisian Exclusive Economic Zone")){ return uuidTunisianExclusiveEconomicZone;
 404                 }else if (guName.equalsIgnoreCase("Wadden Sea")){ return uuidWaddenSea;
 405                 }else if (guName.equalsIgnoreCase("Belt Sea")){ return uuidBeltSea;
 406                 }else if (guName.equalsIgnoreCase("Marmara Sea")){ return uuidMarmaraSea;
 407                 }else if (guName.equalsIgnoreCase("Sea of Azov")){ return uuidSeaofAzov;
 408                 }else if (guName.equalsIgnoreCase("Aegean Sea")){ return uuidAegeanSea;
 409                 }else if (guName.equalsIgnoreCase("Bulgarian Exclusive Economic Zone")){ return uuidBulgarianExclusiveEconomicZone;
 410                 }else if (guName.equalsIgnoreCase("South Baltic proper")){ return uuidSouthBalticproper;
 411                 }else if (guName.equalsIgnoreCase("Baltic Proper")){ return uuidBalticProper;
 412                 }else if (guName.equalsIgnoreCase("North Baltic proper")){ return uuidNorthBalticproper;
 413                 }else if (guName.equalsIgnoreCase("Archipelago Sea")){ return uuidArchipelagoSea;
 414                 }else if (guName.equalsIgnoreCase("Bothnian Sea")){ return uuidBothnianSea;
 415                 }else if (guName.equalsIgnoreCase("German Exclusive Economic Zone")){ return uuidGermanExclusiveEconomicZone;
 416                 }else if (guName.equalsIgnoreCase("Swedish Exclusive Economic Zone")){ return uuidSwedishExclusiveEconomicZone;
 417                 }else if (guName.equalsIgnoreCase("Ukrainian Exclusive Economic Zone")){ return uuidUkrainianExclusiveEconomicZone;
 418                 }else if (guName.equalsIgnoreCase("Madeiran Exclusive Economic Zone")){ return uuidMadeiranExclusiveEconomicZone;
 419                 }else if (guName.equalsIgnoreCase("Lebanese Exclusive Economic Zone")){ return uuidLebaneseExclusiveEconomicZone;
 420                 }else if (guName.equalsIgnoreCase("Spanish Exclusive Economic Zone [Mediterranean part]")){ return uuidSpanishExclusiveEconomicZoneMediterraneanpart;
 421                 }else if (guName.equalsIgnoreCase("Estonian Exclusive Economic Zone")){ return uuidEstonianExclusiveEconomicZone;
 422                 }else if (guName.equalsIgnoreCase("Croatian Exclusive Economic Zone")){ return uuidCroatianExclusiveEconomicZone;
 423                 }else if (guName.equalsIgnoreCase("Balear Sea")){ return uuidBalearSea;
 424                 }else if (guName.equalsIgnoreCase("Turkish Exclusive Economic Zone")){ return uuidTurkishExclusiveEconomicZone;
 425                 }else if (guName.equalsIgnoreCase("Danish Exclusive Economic Zone")){ return uuidDanishExclusiveEconomicZone;
 426                 }else{
 427                         throw new IllegalArgumentException("Unknown area " + guName);
 428                 }
 429
 430         }
 431
 432
 433         public static UUID uuidFromGuId(Integer guId){
 434                 if (guId == null){return null;
 435                 }else if (guId == 7788){ return uuidEuropeanMarineWaters;
 436                 }else if (guId == 7789){ return uuidMediterraneanSea;
 437                 }else if (guId == 7791){ return uuidWhiteSea;
 438                 }else if (guId == 7792){ return uuidNorthSea;
 439                 }else if (guId == 7793){ return uuidBalticSea;
 440                 }else if (guId == 7794){ return uuidBlackSea;
 441                 }else if (guId == 7795){ return uuidBarentsSea;
 442                 }else if (guId == 7796){ return uuidCaspianSea;
 443                 }else if (guId == 7799){ return uuidPortugueseExclusiveEconomicZone;
 444                 }else if (guId == 7802){ return uuidBelgianExclusiveEconomicZone;
 445                 }else if (guId == 7805){ return uuidFrenchExclusiveEconomicZone;
 446                 }else if (guId == 7818){ return uuidEnglishChannel;
 447                 }else if (guId == 7821){ return uuidAdriaticSea;
 448                 }else if (guId == 7831){ return uuidBiscayBay;
 449                 }else if (guId == 7839){ return uuidDutchExclusiveEconomicZone;
 450                 }else if (guId == 7862){ return uuidUnitedKingdomExclusiveEconomicZone;
 451                 }else if (guId == 7869){ return uuidSpanishExclusiveEconomicZone;
 452                 }else if (guId == 7902){ return uuidEgyptianExclusiveEconomicZone;
 453                 }else if (guId == 7939){ return uuidGrecianExclusiveEconomicZone;
 454                 }else if (guId == 7946){ return uuidTirrenoSea;
 455                 }else if (guId == 7964){ return uuidIcelandicExclusiveEconomicZone;
 456                 }else if (guId == 7974){ return uuidIrishExclusiveeconomicZone;
 457                 }else if (guId == 7975){ return uuidIrishSea;
 458                 }else if (guId == 7978){ return uuidItalianExclusiveEconomicZone;
 459                 }else if (guId == 7980){ return uuidNorwegianSea;
 460                 }else if (guId == 8027){ return uuidMoroccanExclusiveEconomicZone;
 461                 }else if (guId == 8050){ return uuidNorwegianExclusiveEconomicZone;
 462                 }else if (guId == 8072){ return uuidSkagerrak;
 463                 }else if (guId == 8143){ return uuidTunisianExclusiveEconomicZone;
 464                 }else if (guId == 8155){ return uuidWaddenSea;
 465                 }else if (guId == 8203){ return uuidBeltSea;
 466                 }else if (guId == 8205){ return uuidMarmaraSea;
 467                 }else if (guId == 8837){ return uuidSeaofAzov;
 468                 }else if (guId == 9146){ return uuidAegeanSea;
 469                 }else if (guId == 9178){ return uuidBulgarianExclusiveEconomicZone;
 470                 }else if (guId == 9903){ return uuidSouthBalticproper;
 471                 }else if (guId == 9904){ return uuidBalticProper;
 472                 }else if (guId == 9905){ return uuidNorthBalticproper;
 473                 }else if (guId == 9908){ return uuidArchipelagoSea;
 474                 }else if (guId == 9909){ return uuidBothnianSea;
 475                 }else if (guId == 10515){ return uuidGermanExclusiveEconomicZone;
 476                 }else if (guId == 10528){ return uuidSwedishExclusiveEconomicZone;
 477                 }else if (guId == 10529){ return uuidUkrainianExclusiveEconomicZone;
 478                 }else if (guId == 10564){ return uuidMadeiranExclusiveEconomicZone;
 479                 }else if (guId == 10574){ return uuidLebaneseExclusiveEconomicZone;
 480                 }else if (guId == 10659){ return uuidSpanishExclusiveEconomicZoneMediterraneanpart;
 481                 }else if (guId == 10708){ return uuidEstonianExclusiveEconomicZone;
 482                 }else if (guId == 10778){ return uuidCroatianExclusiveEconomicZone;
 483                 }else if (guId == 10779){ return uuidBalearSea;
 484                 }else if (guId == 10782){ return uuidTurkishExclusiveEconomicZone;
 485                 }else if (guId == 11039){ return uuidDanishExclusiveEconomicZone;
 486
 487                 }else{
 488                         throw new IllegalArgumentException("Unknown area id " + guId);
 489                 }
 490
 491         }
 492
 493         public static Feature noteType2Feature(String type){
 494                 if (CdmUtils.isEmpty(type)){return null;
 495                 }else if (type.equals("Remark")){return Feature.UNKNOWN();
 496                 }else if (type.equals("Additional information")){return Feature.UNKNOWN();
 497                 }else if (type.equals("Spelling")){return Feature.UNKNOWN();
 498                 }else if (type.equals("Publication date")){return Feature.UNKNOWN();
 499                 }else if (type.equals("Systematics")){return Feature.UNKNOWN();
 500                 }else if (type.equals("Classification")){return Feature.UNKNOWN();
 501                 }else if (type.equals("Environment")){return Feature.UNKNOWN();
 502                 }else if (type.equals("Habitat")){return Feature.UNKNOWN();
 503                 }else if (type.equals("Authority")){return Feature.UNKNOWN();
 504                 }else if (type.equals("Ecology")){return Feature.UNKNOWN();
 505                 }else if (type.equals("Morphology")){return Feature.UNKNOWN();
 506                 }else if (type.equals("Taxonomic Remarks")){return Feature.UNKNOWN();
 507                 }else if (type.equals("NULL")){return Feature.UNKNOWN();
 508                 }else if (type.equals("Distribution")){return Feature.UNKNOWN();
 509                 }else if (type.equals("Note")){return Feature.UNKNOWN();
 510                 }else if (type.equals("Taxonomy")){return Feature.UNKNOWN();
 511                 }else if (type.equals("Taxonomic status")){return Feature.UNKNOWN();
 512                 }else if (type.equals("Status")){return Feature.UNKNOWN();
 513                 }else if (type.equals("Rank")){return Feature.UNKNOWN();
 514                 }else if (type.equals("Homonymy")){return Feature.UNKNOWN();
 515                 }else if (type.equals("Nomenclature")){return Feature.UNKNOWN();
 516                 }else if (type.equals("Type species")){return Feature.UNKNOWN();
 517                 }else if (type.equals("Taxonomic Remark")){return Feature.UNKNOWN();
 518                 }else if (type.equals("Diagnosis")){return Feature.UNKNOWN();
 519                 }else if (type.equals("Date of Publication")){return Feature.UNKNOWN();
 520                 }else if (type.equals("Acknowledgments")){return Feature.UNKNOWN();
 521                 }else if (type.equals("Biology")){return Feature.UNKNOWN();
 522                 }else if (type.equals("Original publication")){return Feature.UNKNOWN();
 523                 }else if (type.equals("Type locality")){return Feature.UNKNOWN();
 524                 }else if (type.equals("Host")){return Feature.UNKNOWN();
 525                 }else if (type.equals("Validity")){return Feature.UNKNOWN();
 526                 }else if (type.equals("Identification")){return Feature.UNKNOWN();
 527                 }else if (type.equals("Synonymy")){return Feature.UNKNOWN();
 528                 }else{
 529                         throw new IllegalArgumentException("Unknown note type " + type);
 530                 }
 531         }
 532
 533         /* (non-Javadoc)
 534          * @see eu.etaxonomy.cdm.io.common.mapping.InputTransformerBase#getFeatureByKey(java.lang.String)
 535          */
 536         @Override
 537         public Feature getFeatureByKey(String key) throws UndefinedTransformerMethodException {
 538                 if (CdmUtils.isEmpty(key)){return null;
 539                 }else if (key.equalsIgnoreCase("Distribution")){return Feature.DISTRIBUTION();
 540                 }else if (key.equalsIgnoreCase("Ecology")){return Feature.ECOLOGY();
 541                 }else if (key.equalsIgnoreCase("Diagnosis")){return Feature.DIAGNOSIS();
 542                 }else if (key.equalsIgnoreCase("Biology")){return Feature.BIOLOGY_ECOLOGY();
 543                 }else if (key.equalsIgnoreCase("Host")){return Feature.HOSTPLANT();
 544                 }else{
 545                         return null;
 546                 }
 547         }
 548
 549         /* (non-Javadoc)
 550          * @see eu.etaxonomy.cdm.io.common.mapping.InputTransformerBase#getFeatureUuid(java.lang.String)
 551          */
 552         @Override
 553         public UUID getFeatureUuid(String key)
 554                         throws UndefinedTransformerMethodException {
 555                 if (CdmUtils.isEmpty(key)){return null;
 556                 }else if (key.equalsIgnoreCase("Remark")){return uuidRemark;
 557                 }else if (key.equalsIgnoreCase("Additional information")){return uuidAdditionalinformation;
 558                 }else if (key.equalsIgnoreCase("Spelling")){return uuidSpelling;
 559                 }else if (key.equalsIgnoreCase("Publication date")){return uuidPublicationdate;
 560                 }else if (key.equalsIgnoreCase("Systematics")){return uuidSystematics;
 561                 }else if (key.equalsIgnoreCase("Classification")){return uuidClassification;
 562                 }else if (key.equalsIgnoreCase("Environment")){return uuidEnvironment;
 563                 }else if (key.equalsIgnoreCase("Habitat")){return uuidHabitat;
 564                 }else if (key.equalsIgnoreCase("Authority")){return uuidAuthority;
 565                 }else if (key.equalsIgnoreCase("Morphology")){return uuidMorphology;
 566                 }else if (key.equalsIgnoreCase("Taxonomic Remarks")){return uuidTaxonomicRemarks;
 567                 }else if (key.equalsIgnoreCase("Note")){return uuidNote;
 568                 }else if (key.equalsIgnoreCase("Taxonomy")){return uuidTaxonomy;
 569                 }else if (key.equalsIgnoreCase("Taxonomic status")){return uuidTaxonomicstatus;
 570                 }else if (key.equalsIgnoreCase("Status")){return uuidStatus;
 571                 }else if (key.equalsIgnoreCase("Rank")){return uuidRank;
 572                 }else if (key.equalsIgnoreCase("Homonymy")){return uuidHomonymy;
 573                 }else if (key.equalsIgnoreCase("Nomenclature")){return uuidNomenclature;
 574                 }else if (key.equalsIgnoreCase("Type species")){return uuidTypespecies;
 575                 }else if (key.equalsIgnoreCase("Taxonomic Remark")){return uuidTaxonomicRemark;
 576                 }else if (key.equalsIgnoreCase("Date of Publication")){return uuidDateofPublication;
 577                 }else if (key.equalsIgnoreCase("Acknowledgments")){return uuidAcknowledgments;
 578                 }else if (key.equalsIgnoreCase("Original publication")){return uuidOriginalpublication;
 579                 }else if (key.equalsIgnoreCase("Type locality")){return uuidTypelocality;
 580                 }else if (key.equalsIgnoreCase("Validity")){return uuidValidity;
 581                 }else if (key.equalsIgnoreCase("Identification")){return uuidIdentification;
 582                 }else if (key.equalsIgnoreCase("Synonymy")){return uuidSynonymy;
 583                 }else{
 584                         return null;
 585                 }
 586         }
 587
 588
 589
 590 }