cdmlib-io/src/test/java/eu/etaxonomy/cdm/io/excel/taxa/NormalExplicitImportTest.java

   1 // $Id$
   2 /**
   3 * Copyright (C) 2007 EDIT
   4 * European Distributed Institute of Taxonomy
   5 * http://www.e-taxonomy.eu
   6 *
   7 * The contents of this file are subject to the Mozilla Public License Version 1.1
   8 * See LICENSE.TXT at the top of this package for the full license terms.
   9 */
  10
  11 package eu.etaxonomy.cdm.io.excel.taxa;
  12
  13 import static org.junit.Assert.assertEquals;
  14 import static org.junit.Assert.assertNotNull;
  15 import static org.junit.Assert.assertTrue;
  16
  17 import java.net.URL;
  18 import java.util.ArrayList;
  19 import java.util.HashSet;
  20 import java.util.Iterator;
  21 import java.util.List;
  22 import java.util.Set;
  23
  24 import junit.framework.Assert;
  25
  26 import org.apache.log4j.Logger;
  27 import org.junit.Before;
  28 import org.junit.Ignore;
  29 import org.junit.Test;
  30 import org.unitils.dbunit.annotation.DataSet;
  31 import org.unitils.spring.annotation.SpringBeanByName;
  32 import org.unitils.spring.annotation.SpringBeanByType;
  33
  34 import eu.etaxonomy.cdm.api.service.INameService;
  35 import eu.etaxonomy.cdm.api.service.ITaxonService;
  36 import eu.etaxonomy.cdm.api.service.ITaxonTreeService;
  37 import eu.etaxonomy.cdm.io.common.CdmApplicationAwareDefaultImport;
  38 import eu.etaxonomy.cdm.io.common.IImportConfigurator;
  39 import eu.etaxonomy.cdm.model.description.CommonTaxonName;
  40 import eu.etaxonomy.cdm.model.description.DescriptionElementBase;
  41 import eu.etaxonomy.cdm.model.description.TaxonDescription;
  42 import eu.etaxonomy.cdm.model.name.NomenclaturalCode;
  43 import eu.etaxonomy.cdm.model.name.NonViralName;
  44 import eu.etaxonomy.cdm.model.taxon.Synonym;
  45 import eu.etaxonomy.cdm.model.taxon.Taxon;
  46 import eu.etaxonomy.cdm.model.taxon.TaxonNode;
  47 import eu.etaxonomy.cdm.model.taxon.TaxonomicTree;
  48 import eu.etaxonomy.cdm.test.integration.CdmTransactionalIntegrationTest;
  49
  50 /**
  51  * @author a.mueller
  52  * @created 26.08.2009
  53  * @version 1.0
  54  */
  55 public class NormalExplicitImportTest extends CdmTransactionalIntegrationTest{
  56         @SuppressWarnings("unused")
  57         private static final Logger logger = Logger.getLogger(NormalExplicitImportTest.class);
  58
  59         @SpringBeanByName
  60         CdmApplicationAwareDefaultImport defaultImport;
  61
  62         @SpringBeanByType
  63         INameService nameService;
  64
  65         @SpringBeanByType
  66         ITaxonService taxonService;
  67
  68         @SpringBeanByType
  69         ITaxonTreeService taxonTreeService;
  70
  71         private IImportConfigurator configurator;
  72
  73         @Before
  74         public void setUp() {
  75                 String inputFile = "/eu/etaxonomy/cdm/io/excel/taxa/NormalExplicitImportTest-input.xls";
  76                 URL url = this.getClass().getResource(inputFile);
  77                 assertNotNull("URL for the test file '" + inputFile + "' does not exist", url);
  78                 configurator = NormalExplicitImportConfigurator.NewInstance(url.toString(), null, NomenclaturalCode.ICBN);
  79                 assertNotNull("Configurator could not be created", configurator);
  80         }
  81
  82         @Test
  83         public void testInit() {
  84                 assertNotNull("normalExplicitImport should not be null", defaultImport);
  85                 assertNotNull("nameService should not be null", nameService);
  86         }
  87
  88         @Test
  89         @DataSet
  90         @Ignore //does run standalone, but not in suite (maven)
  91         public void testDoInvoke() {
  92                 //printDataSet(System.out);
  93                 boolean result = defaultImport.invoke(configurator);
  94                 assertTrue("Return value for import.invoke should be true", result);
  95                 assertEquals("Number of TaxonNames should be 9", 9, nameService.count());
  96                 List<TaxonomicTree> treeList = taxonTreeService.list(null, null).getRecords();
  97                 assertEquals("Number of taxonomic trees should be 1", 1, treeList.size());
  98                 TaxonomicTree tree = treeList.get(0);
  99                 Set<TaxonNode> rootNodes = tree.getRootNodes();
 100                 assertEquals("Number of root nodes should be 1", 1, rootNodes.size());
 101                 TaxonNode rootNode = rootNodes.iterator().next();
 102                 assertEquals("Root taxon name should be Animalia", "Animalia", rootNode.getTaxon().getName().getTitleCache());
 103                 TaxonNode arthropodaNode = rootNode.getChildNodes().iterator().next();
 104                 assertEquals("Arthropoda node taxon name should be Arthropoda", "Arthropoda", arthropodaNode.getTaxon().getName().getTitleCache());
 105                 TaxonNode insectaNode = arthropodaNode.getChildNodes().iterator().next();
 106                 TaxonNode lepidopteraNode = insectaNode.getChildNodes().iterator().next();
 107                 TaxonNode noctuidaeNode = lepidopteraNode.getChildNodes().iterator().next();
 108                 TaxonNode noctuaNode = noctuidaeNode.getChildNodes().iterator().next();
 109                 assertEquals("Number of child nodes of noctuca should be 2", 2, noctuaNode.getChildNodes().size());
 110
 111                 Iterator<TaxonNode> it = noctuaNode.getChildNodes().iterator();
 112                 TaxonNode childNode1 = it.next();
 113                 TaxonNode childNode2 = it.next();
 114
 115                 TaxonNode noctuaPronubaNode;
 116                 if (childNode1.getTaxon().getName().getTitleCache().startsWith("Noctua pronuba")){
 117                         noctuaPronubaNode = childNode1;
 118                 }else{
 119                         noctuaPronubaNode = childNode2;
 120                 }
 121
 122                 assertEquals("Noctua pronuba taxon name should be ", "Noctua pronuba", noctuaPronubaNode.getTaxon().getName().getTitleCache());
 123                 Taxon noctuaPronubaTaxon = noctuaPronubaNode.getTaxon();
 124                 Set<Synonym> synonyms = noctuaPronubaTaxon.getSynonyms();
 125                 assertEquals("Number of synonyms should be 1", 1, synonyms.size());
 126                 Synonym synonym = synonyms.iterator().next();
 127                 assertEquals("Synonym name should be ", "Noctua atlantica", ((NonViralName)synonym.getName()).getNameCache());
 128                 Set<TaxonDescription> descriptions = noctuaPronubaTaxon.getDescriptions();
 129                 Assert.assertEquals("Number of descriptions should be 1", 1, descriptions.size());
 130                 TaxonDescription taxonDescription = descriptions.iterator().next();
 131                 Set<DescriptionElementBase> elements = taxonDescription.getElements();
 132                 List<CommonTaxonName> commonNames = new ArrayList<CommonTaxonName>();
 133                 for (DescriptionElementBase element : elements){
 134                         if (element.isInstanceOf(CommonTaxonName.class)){
 135                                 commonNames.add((CommonTaxonName)element);
 136                         }
 137                 }
 138                 Assert.assertEquals("Number of common names should be 2", 2, commonNames.size());
 139                 Set<String> commonNameStrings = new HashSet<String>();
 140                 commonNameStrings.add(commonNames.get(0).getName());
 141                 commonNameStrings.add(commonNames.get(1).getName());
 142                 Assert.assertTrue("Common names must include Yellow Underwing", commonNameStrings.contains("Large Sunshine Underwing"));
 143                 Assert.assertTrue("Common names must include Yellow Underwing", commonNameStrings.contains("Yellow Underwing"));
 144         }
 145 }