unknown [Fri, 24 Mar 2017 19:56:32 +0000 (20:56 +0100)]
cleanup
Katja Luther [Fri, 24 Mar 2017 21:38:22 +0000 (22:38 +0100)]
add an activator for outputmodel export
unknown [Sun, 19 Mar 2017 21:29:13 +0000 (22:29 +0100)]
cleanup
unknown [Sun, 19 Mar 2017 21:28:29 +0000 (22:28 +0100)]
ref #6286 FloraHellenica import continued
Andreas Müller [Thu, 16 Mar 2017 19:56:22 +0000 (20:56 +0100)]
ref #6519 adapt app-import to ExportResult
Andreas Müller [Wed, 15 Mar 2017 21:27:17 +0000 (22:27 +0100)]
ref #6510 adapte rank label activator
Andreas Müller [Wed, 15 Mar 2017 18:30:15 +0000 (19:30 +0100)]
ref #6517: make edaphobase taxon IDs stable for example data
Andreas Müller [Wed, 15 Mar 2017 15:43:43 +0000 (16:43 +0100)]
ref #6515 move tropicos identifier link from mexico import to cdmlib
Andreas Müller [Wed, 15 Mar 2017 10:51:02 +0000 (11:51 +0100)]
ref #6365 adapt BotanicalNames in pesi test to new structure
Andreas Müller [Wed, 15 Mar 2017 10:49:03 +0000 (11:49 +0100)]
ref #6419 rename CdmApplicationDefaultConfiguration in pesi
Andreas Müller [Wed, 15 Mar 2017 10:39:00 +0000 (11:39 +0100)]
ref #6510 add Rank translation import activator
Andreas Müller [Wed, 15 Mar 2017 10:38:13 +0000 (11:38 +0100)]
ref #6410 Nepenthacea IPNI import activator
Andreas Müller [Wed, 15 Mar 2017 10:19:55 +0000 (11:19 +0100)]
minor
Katja Luther [Wed, 15 Mar 2017 10:29:15 +0000 (11:29 +0100)]
gerge branch 'master' of ssh://dev.e-taxonomy.eu/var/git/cdmlib-apps
Katja Luther [Wed, 15 Mar 2017 10:28:52 +0000 (11:28 +0100)]
changes in pesi im and exports
Andreas Müller [Wed, 15 Mar 2017 10:19:27 +0000 (11:19 +0100)]
ref #6410 configure extension for taxon title
Andreas Müller [Wed, 15 Mar 2017 10:14:13 +0000 (11:14 +0100)]
Update cdm-app poms to v4.7
Andreas Müller [Fri, 17 Feb 2017 09:51:49 +0000 (10:51 +0100)]
ref #6410 adapt NepenthaceaeActivator
Andreas Müller [Fri, 17 Feb 2017 09:50:41 +0000 (10:50 +0100)]
ref #6419 adapt to CdmRepository in cdmlib-app
Andreas Müller [Sat, 4 Feb 2017 09:47:48 +0000 (10:47 +0100)]
ref #6410 add NepenthaceaeActivator
Andreas Müller [Sat, 4 Feb 2017 09:46:28 +0000 (10:46 +0100)]
ref #6362, ref #6365 remove occurrences of NonViralName, BotanicalName and ZoologicalName in cdmlib-app
Andreas Müller [Mon, 30 Jan 2017 12:28:03 +0000 (13:28 +0100)]
ref #6365 use TaxonNameFactory for factory methods in cdmlib-app
Andreas Müller [Thu, 26 Jan 2017 16:02:01 +0000 (17:02 +0100)]
ref #6369 adapt existing occurrences of interface to removed generics in cdmlib-app
Andreas Müller [Thu, 26 Jan 2017 16:00:24 +0000 (17:00 +0100)]
adapt pom version in cdmlib-app
Andreas Müller [Wed, 18 Jan 2017 22:20:19 +0000 (23:20 +0100)]
ref #5974 remove synonymRelationships from BfN Import init strategy
Andreas Müller [Tue, 17 Jan 2017 21:56:05 +0000 (22:56 +0100)]
Add some Spanish representations to Salvador terms
Patrick Plitzner [Mon, 16 Jan 2017 11:45:21 +0000 (12:45 +0100)]
Merge branch 'master' into noChecklistClone
Patrick Plitzner [Mon, 16 Jan 2017 11:40:51 +0000 (12:40 +0100)]
ref #5448 Add new rank "forme"
- did some refactoring and advanced logging
Andreas Müller [Tue, 10 Jan 2017 13:45:33 +0000 (14:45 +0100)]
Adapt English quotation marks
Andreas Müller [Tue, 10 Jan 2017 10:24:15 +0000 (11:24 +0100)]
ref #6265 remove Description from Salvador taxa
Andreas Müller [Fri, 23 Dec 2016 16:18:24 +0000 (17:18 +0100)]
minor
Andreas Müller [Fri, 23 Dec 2016 16:18:08 +0000 (17:18 +0100)]
ref #6286 first incomplete version of Flora Hellenica import
Andreas Müller [Fri, 23 Dec 2016 15:18:18 +0000 (16:18 +0100)]
ref #3934 latest changes to Salvador import
Andreas Müller [Thu, 22 Dec 2016 13:07:56 +0000 (14:07 +0100)]
ref #3934 latest changes to Salvador import
Patrick Plitzner [Wed, 21 Dec 2016 08:14:30 +0000 (02:14 -0600)]
Merge branch 'master' into noChecklistClone
Andreas Kohlbecker [Tue, 20 Dec 2016 10:52:53 +0000 (11:52 +0100)]
ref #6190 removing svn property place holder in first line of code
Andreas Müller [Fri, 9 Dec 2016 10:22:42 +0000 (11:22 +0100)]
ref #6252 and ref #3934 Improve image import, fix distribution import and add area level / type
Andreas Müller [Thu, 8 Dec 2016 20:23:14 +0000 (21:23 +0100)]
ref #6252 improve salvador image import
Andreas Müller [Thu, 8 Dec 2016 20:21:49 +0000 (21:21 +0100)]
ref #3937 Remove marker from salvador import
Andreas Müller [Thu, 8 Dec 2016 15:22:18 +0000 (16:22 +0100)]
ref #6252 updates for salvador image import
Andreas Müller [Thu, 8 Dec 2016 15:17:05 +0000 (16:17 +0100)]
ref #2937 start GermanSL import
Andreas Müller [Thu, 8 Dec 2016 15:16:10 +0000 (16:16 +0100)]
ref #3934 Add feature tree to SalvadorActivator
Andreas Müller [Wed, 7 Dec 2016 14:03:40 +0000 (15:03 +0100)]
ref #6252 latest Salvador image import changes
Andreas Müller [Mon, 5 Dec 2016 10:13:50 +0000 (11:13 +0100)]
update cdmlib-apps pom version
Patrick Plitzner [Thu, 1 Dec 2016 08:29:37 +0000 (09:29 +0100)]
Merge branch 'master' into noChecklistClone
# Conflicts:
# app-import/src/main/java/eu/etaxonomy/cdm/io/redlist/gefaesspflanzen/RedListGefaesspflanzenImportFamily.java
# app-import/src/main/java/eu/etaxonomy/cdm/io/redlist/gefaesspflanzen/RedListGefaesspflanzenImportNames.java
Patrick Plitzner [Thu, 1 Dec 2016 08:09:58 +0000 (09:09 +0100)]
ref #5448 Correctly set sec reference on synonyms and avoid for
misapplied names
Patrick Plitzner [Thu, 20 Oct 2016 13:25:19 +0000 (15:25 +0200)]
ref #5448 Import additional information as extension instead of
annotations
Patrick Plitzner [Thu, 20 Oct 2016 13:24:52 +0000 (15:24 +0200)]
ref #5448 Fix saving of imported families
Patrick Plitzner [Tue, 29 Nov 2016 16:42:09 +0000 (17:42 +0100)]
Avoid cloning taxa for checklist classification
Andreas Müller [Thu, 24 Nov 2016 09:24:21 +0000 (10:24 +0100)]
ref #3934 update Salvador import for facts
Andreas Müller [Sat, 19 Nov 2016 06:59:21 +0000 (07:59 +0100)]
ref #3934 fix factCategory SQL
Andreas Müller [Fri, 18 Nov 2016 21:20:10 +0000 (22:20 +0100)]
ref #3934 update Salvador import for facts
Andreas Müller [Fri, 18 Nov 2016 15:45:01 +0000 (16:45 +0100)]
minor compile issues
Andreas Müller [Fri, 18 Nov 2016 15:34:53 +0000 (16:34 +0100)]
ref #3934 Latest changes in Salvador import
Andreas Müller [Fri, 18 Nov 2016 15:34:14 +0000 (16:34 +0100)]
Adapt BgbmInstancesUpdater to new databases
Andreas Müller [Fri, 18 Nov 2016 15:33:34 +0000 (16:33 +0100)]
Add nom. illeg. superfl. to allowed nom.states. without basionym in BM import
Andreas Müller [Fri, 18 Nov 2016 15:32:39 +0000 (16:32 +0100)]
Adapt BMTaxonRelationExport to new Synonym model
Andreas Müller [Fri, 18 Nov 2016 15:30:52 +0000 (16:30 +0100)]
cleanup
Andreas Müller [Fri, 18 Nov 2016 15:26:15 +0000 (16:26 +0100)]
Merge branch 'master' of ssh://dev.e-taxonomy.eu/var/git/cdmlib-apps
Andreas Müller [Fri, 18 Nov 2016 15:26:01 +0000 (16:26 +0100)]
minor
Andreas Müller [Thu, 10 Nov 2016 12:32:05 +0000 (13:32 +0100)]
Merge branch 'master' of ssh://dev.e-taxonomy.eu/var/git/cdmlib-apps
Conflicts:
app-import/src/main/java/eu/etaxonomy/cdm/app/common/CdmDestinations.java
app-import/src/main/java/eu/etaxonomy/cdm/app/sdd/SDDExportActivator.java
app-import/src/main/java/eu/etaxonomy/cdm/app/sdd/SDDImportActivator.java
Andreas Müller [Thu, 10 Nov 2016 11:54:37 +0000 (12:54 +0100)]
Cleanup and remove deprecated method
Andreas Müller [Thu, 10 Nov 2016 11:53:45 +0000 (12:53 +0100)]
Update Salvador import
Katja Luther [Tue, 8 Nov 2016 08:45:43 +0000 (09:45 +0100)]
adapt getDescription() see #5680
Andreas Kohlbecker [Mon, 7 Nov 2016 09:31:14 +0000 (10:31 +0100)]
fix #5862 by correctly managing dependencies
Katja Luther [Fri, 4 Nov 2016 15:19:33 +0000 (16:19 +0100)]
change the versions to 4.4
Andreas Müller [Fri, 21 Oct 2016 12:54:42 +0000 (14:54 +0200)]
fix localH2 username in eFlora
Andreas Müller [Fri, 21 Oct 2016 12:52:13 +0000 (14:52 +0200)]
ref #3925 fix excluded flag for Cuba
Andreas Müller [Fri, 21 Oct 2016 12:50:25 +0000 (14:50 +0200)]
Cleanup and gitignore in app-import
Andreas Müller [Fri, 21 Oct 2016 12:48:36 +0000 (14:48 +0200)]
Cleanup app-import test data
Andreas Müller [Thu, 13 Oct 2016 11:42:47 +0000 (13:42 +0200)]
ref #5499 latest changes to Edaphobase import
Andreas Müller [Thu, 13 Oct 2016 11:41:46 +0000 (13:41 +0200)]
ref #5974 Remove synonym relationships (not finished yet)
Andreas Müller [Thu, 13 Oct 2016 11:30:18 +0000 (13:30 +0200)]
ref #3658 remove nomenclaturalCode
Andreas Müller [Wed, 28 Sep 2016 12:52:16 +0000 (14:52 +0200)]
cleanup IAPTImportTest
Patrick Plitzner [Wed, 21 Sep 2016 10:00:44 +0000 (12:00 +0200)]
ref #5448 Remove unnecessary saving
Patrick Plitzner [Wed, 21 Sep 2016 10:00:27 +0000 (12:00 +0200)]
ref #5448 Enhance name checking
Andreas Kohlbecker [Tue, 20 Sep 2016 10:23:00 +0000 (12:23 +0200)]
fix #6035 one more broken character
Andreas Kohlbecker [Tue, 20 Sep 2016 09:45:25 +0000 (11:45 +0200)]
fix #6093 including more taxa into algea registry import
Andreas Kohlbecker [Mon, 19 Sep 2016 12:14:54 +0000 (14:14 +0200)]
ref #6097 filter to include algae only - better match pattern
Andreas Kohlbecker [Mon, 19 Sep 2016 11:33:21 +0000 (13:33 +0200)]
#6097 filter to include algae only
Andreas Kohlbecker [Mon, 19 Sep 2016 11:33:13 +0000 (13:33 +0200)]
moving TestDatabase back to main - a couple of classes had complie errors
Andreas Kohlbecker [Mon, 19 Sep 2016 07:29:54 +0000 (09:29 +0200)]
removing duplicate repository
Andreas Kohlbecker [Mon, 19 Sep 2016 06:19:08 +0000 (08:19 +0200)]
Merge branch 'IAPT'
Conflicts:
app-import/.gitignore
app-import/pom.xml
Andreas Müller [Thu, 15 Sep 2016 21:13:14 +0000 (23:13 +0200)]
move test classes in app-import
Andreas Kohlbecker [Fri, 16 Sep 2016 22:27:53 +0000 (00:27 +0200)]
fix #6095 log duplicate registrations during import
Andreas Kohlbecker [Fri, 16 Sep 2016 15:20:10 +0000 (17:20 +0200)]
fix #6094 importing 'registration' data into an Extension object
Andreas Kohlbecker [Fri, 16 Sep 2016 09:13:42 +0000 (11:13 +0200)]
ref #6026 SpecimenType = FOSSIL for fossil taxa/names
Andreas Kohlbecker [Fri, 16 Sep 2016 06:19:51 +0000 (08:19 +0200)]
ref #6026 more parser improvements and tests
Andreas Müller [Thu, 15 Sep 2016 21:13:14 +0000 (23:13 +0200)]
move test classes in app-import
Andreas Kohlbecker [Thu, 15 Sep 2016 20:22:29 +0000 (22:22 +0200)]
ref #6026 more parser improvements and tests
Andreas Kohlbecker [Thu, 15 Sep 2016 15:51:05 +0000 (17:51 +0200)]
ref #6026 improving specimenType parsers: better recognition of 'Coll. something' types
Andreas Kohlbecker [Thu, 15 Sep 2016 15:32:37 +0000 (17:32 +0200)]
ref #6026 solving problems in date and specimenType parsers, also implementing tests
Andreas Kohlbecker [Thu, 15 Sep 2016 12:04:17 +0000 (14:04 +0200)]
ref #6035 adding more character fixed and adding source referenence for all names
Andreas Kohlbecker [Mon, 12 Sep 2016 22:12:35 +0000 (00:12 +0200)]
ref #6026 'Coll. Lange-Bertalot..' as titleCache of Collection
Andreas Kohlbecker [Mon, 12 Sep 2016 22:07:51 +0000 (00:07 +0200)]
ref #6026 using genera as higher taxon for species
Andreas Kohlbecker [Mon, 12 Sep 2016 13:34:14 +0000 (15:34 +0200)]
fix #6068
Andreas Kohlbecker [Mon, 12 Sep 2016 13:03:18 +0000 (15:03 +0200)]
ref #6026 3 more character replacement rule
Andreas Kohlbecker [Mon, 12 Sep 2016 12:36:47 +0000 (14:36 +0200)]
ref #6026 fixing rank
Andreas Kohlbecker [Mon, 12 Sep 2016 10:36:27 +0000 (12:36 +0200)]
ref #6026 fixing bug in publication regex pattern
Andreas Kohlbecker [Mon, 12 Sep 2016 10:08:54 +0000 (12:08 +0200)]
ref #6026 speedup of import and fixing a minor bug
- speedup by special handling for hardly to parse reference
- minor bug during camparison of basionym names