-/**
-* Copyright (C) 2007 EDIT
-* European Distributed Institute of Taxonomy
-* http://www.e-taxonomy.eu
-*
-* The contents of this file are subject to the Mozilla Public License Version 1.1
-* See LICENSE.TXT at the top of this package for the full license terms.
-*/
-
-package eu.etaxonomy.cdm.io.pesi.faunaEuropaea;
-
-import java.sql.ResultSet;
-import java.sql.SQLException;
-import java.util.HashMap;
-import java.util.UUID;
-
-import org.apache.log4j.Logger;
-
-import eu.etaxonomy.cdm.api.service.ITermService;
-import eu.etaxonomy.cdm.io.common.TdwgAreaProvider;
-import eu.etaxonomy.cdm.model.common.DefinedTerm;
-import eu.etaxonomy.cdm.model.common.Language;
-import eu.etaxonomy.cdm.model.common.Representation;
-import eu.etaxonomy.cdm.model.common.TermType;
-import eu.etaxonomy.cdm.model.description.PresenceAbsenceTerm;
-import eu.etaxonomy.cdm.model.location.NamedArea;
-import eu.etaxonomy.cdm.model.name.NomenclaturalStatusType;
-import eu.etaxonomy.cdm.model.name.Rank;
-import eu.etaxonomy.cdm.strategy.exceptions.UnknownCdmTypeException;
-
-/**
- * @author a.babadshanjan
- * @created 12.05.2009
- * @version 1.0
- */
-
-public final class FaunaEuropaeaTransformer {
- private static final Logger logger = Logger.getLogger(FaunaEuropaeaTransformer.class);
-
- // Query
- public static final int Q_NO_RESTRICTION = -1;
-
- // TaxonStatus
- public static final int T_STATUS_ACCEPTED = 1;
- public static final int T_STATUS_NOT_ACCEPTED = 0;
-
- // Author
- public static final int A_AUCT = 1;
- public static final String A_AUCTNAME = "auct.";
-
- // Parenthesis
- public static final int P_PARENTHESIS = 1;
-
- // User
-
- public static final int U_ACTIVE = 1;
-
- //new AbsencePresenceTermUUIDs
-
- public static UUID noData;
- //public static UUID doubtfull_present;
-
- // Rank
- public static final int R_KINGDOM = 1;
- public static final int R_SUBKINGDOM = 2;
- public static final int R_SUPERPHYLUM = 3;
- public static final int R_PHYLUM = 4;
- public static final int R_SUBPHYLUM = 5;
- public static final int R_INFRAPHYLUM = 6;
- public static final int R_CLASS = 7;
- public static final int R_SUBCLASS = 8;
- public static final int R_INFRACLASS = 9;
- public static final int R_SUPERORDER = 10;
- public static final int R_ORDER = 11;
- public static final int R_SUBORDER = 12;
- public static final int R_INFRAORDER = 13;
- public static final int R_SUPERFAMILY = 14;
- public static final int R_FAMILY = 15;
- public static final int R_SUBFAMILY = 16;
- public static final int R_TRIBE = 17;
- public static final int R_SUBTRIBE = 18;
- public static final int R_GENUS = 19;
- public static final int R_SUBGENUS = 20;
- public static final int R_SPECIES = 21;
- public static final int R_SUBSPECIES = 22;
-
- public static PresenceAbsenceTerm occStatus2PresenceAbsence(int occStatusId) throws UnknownCdmTypeException{
-
- if (Integer.valueOf(occStatusId) == null) {
- return PresenceAbsenceTerm.PRESENT();
- }
- switch (occStatusId){
- case 0: return PresenceAbsenceTerm.PRESENT();
- case 2: return PresenceAbsenceTerm.ABSENT();
- case 1: return PresenceAbsenceTerm.PRESENT_DOUBTFULLY();
-
- default: {
-
- return null;
-
-
- }
-
- }
- }
- public static void setUUIDs(UUID uuid){
- noData = uuid;
- //doubtfull_present = uuids.get("doubtfullPresent");
-
- }
-
- public static PresenceAbsenceTerm occStatus2PresenceAbsence_ (int occStatusId) throws UnknownCdmTypeException{
- switch (occStatusId){
- case 0: return null;
- //case 110: return AbsenceTerm.CULTIVATED_REPORTED_IN_ERROR();
- case 120: return PresenceAbsenceTerm.CULTIVATED();
- // case 210: return AbsenceTerm.INTRODUCED_REPORTED_IN_ERROR();
- case 220: return PresenceAbsenceTerm.INTRODUCED_PRESENCE_QUESTIONABLE();
- case 230: return PresenceAbsenceTerm.INTRODUCED_FORMERLY_INTRODUCED();
- case 240: return PresenceAbsenceTerm.INTRODUCED_DOUBTFULLY_INTRODUCED();
- case 250: return PresenceAbsenceTerm.INTRODUCED();
- case 260: return PresenceAbsenceTerm.INTRODUCED_UNCERTAIN_DEGREE_OF_NATURALISATION();
- case 270: return PresenceAbsenceTerm.INTRODUCED_ADVENTITIOUS();
- case 280: return PresenceAbsenceTerm.INTRODUCED_NATURALIZED();
- //case 310: return AbsenceTerm.NATIVE_REPORTED_IN_ERROR();
- case 320: return PresenceAbsenceTerm.NATIVE_PRESENCE_QUESTIONABLE();
- case 330: return PresenceAbsenceTerm.NATIVE_FORMERLY_NATIVE();
- case 340: return PresenceAbsenceTerm.NATIVE_DOUBTFULLY_NATIVE();
- case 350: return PresenceAbsenceTerm.NATIVE();
- case 999: {
- logger.warn("endemic for EM can not be transformed in legal status");
- //TODO preliminary
- return PresenceAbsenceTerm.PRESENT();
- }
- default: {
- throw new UnknownCdmTypeException("Unknown occurrence status (id=" + Integer.valueOf(occStatusId).toString() + ")");
- }
- }
- }
-
-
- public static Rank rankId2Rank (ResultSet rs, boolean useUnknown) throws UnknownCdmTypeException {
- Rank result;
- try {
- int rankId = rs.getInt("rnk_id");
- int parentRankId = rs.getInt("rnk_rnk_id");
- String rankName = rs.getString("rnk_name");
- String rankLatinName = rs.getString("rnk_latinname");
- int rankCategory = rs.getInt("rnk_category");
-
- if (logger.isDebugEnabled()) {
- logger.debug(rankId + ", " + parentRankId + ", " + rankName + ", " + rankCategory);
- }
-
- try {
- result = Rank.getRankByNameOrIdInVoc(rankName);
- } catch (UnknownCdmTypeException e1) {
-
- switch (rankId) {
- case 0: return null;
- case R_KINGDOM: return Rank.KINGDOM();
- case R_SUBKINGDOM: return Rank.SUBKINGDOM();
- case R_SUPERPHYLUM: return Rank.SUPERPHYLUM();
- case R_PHYLUM: return Rank.PHYLUM();
- case R_SUBPHYLUM: return Rank.SUBPHYLUM();
- case R_INFRAPHYLUM: return Rank.INFRAPHYLUM();
- case R_CLASS: return Rank.CLASS();
- case R_SUBCLASS: return Rank.SUBCLASS();
- case R_INFRACLASS: return Rank.INFRACLASS();
- case R_SUPERORDER: return Rank.SUPERORDER();
- case R_ORDER: return Rank.ORDER();
- case R_SUBORDER: return Rank.SUBORDER();
- case R_INFRAORDER: return Rank.INFRAORDER();
- case R_SUPERFAMILY: return Rank.SUPERFAMILY();
- case R_FAMILY: return Rank.FAMILY();
- case R_SUBFAMILY: return Rank.SUBFAMILY();
- case R_TRIBE: return Rank.TRIBE();
- case R_SUBTRIBE: return Rank.SUBTRIBE();
- case R_GENUS: return Rank.GENUS();
- case R_SUBGENUS: return Rank.SUBGENUS();
- case R_SPECIES: return Rank.SPECIES();
- case R_SUBSPECIES: return Rank.SUBSPECIES();
-
- default: {
- if (useUnknown){
- logger.error("Rank unknown. Created UNKNOWN_RANK");
- return Rank.UNKNOWN_RANK();
- }
- throw new UnknownCdmTypeException("Unknown Rank id" + Integer.valueOf(rankId).toString());
- }
- }
- }
- return result;
- } catch (SQLException e) {
- e.printStackTrace();
- logger.warn("Exception occurred. Created UNKNOWN_RANK instead");
- return Rank.UNKNOWN_RANK();
- }
- }
-
-
- public static NamedArea areaId2TdwgArea (FaunaEuropaeaDistribution fauEuDistribution)
- throws UnknownCdmTypeException {
-
- NamedArea tdwgArea = null;
-
- try {
- int areaId = fauEuDistribution.getAreaId();
- String areaName = fauEuDistribution.getAreaName();
- String areaCode = fauEuDistribution.getAreaCode();
- int extraLimital = fauEuDistribution.getExtraLimital();
-
- //TODO: Verify mappings with comments. Those don't map to TDWG areas.
-
- if (areaCode.equals("AD")) {
- tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("SPA-AN");
- } else if (areaCode.equals("AL")) {
- tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("ALB-OO");
- } else if (areaCode.equals("AT")) {
- tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("AUT-AU");
- } else if (areaCode.equals("AUS")) {
- tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("AUS"); // Australian region - Australia
- } else if (areaCode.equals("BA")) {
- tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("YUG-BH");
- } else if (areaCode.equals("BE")) {
- tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("BGM-BE");
- } else if (areaCode.equals("BG")) {
- tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("BUL-OO");
- } else if (areaCode.equals("BY")) {
- tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("BLR-OO");
- } else if (areaCode.equals("CH")) {
- tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("SWI-OO");
- } else if (areaCode.equals("CY")) {
- tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("CYP-OO");
- } else if (areaCode.equals("CZ")) {
- tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("CZE-CZ");
- } else if (areaCode.equals("DE")) {
- tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("GER-OO");
- } else if (areaCode.equals("DK-DEN")) {
- tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("DEN-OO");
- } else if (areaCode.equals("DK-FOR")) {
- tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("FOR-OO");
- } else if (areaCode.equals("EE")) {
- tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("BLT-ES");
- } else if (areaCode.equals("ES-BAL")) {
- tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("BAL-OO");
- } else if (areaCode.equals("ES-CNY")) {
- tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("CNY-OO");
- } else if (areaCode.equals("ES-SPA")) {
- tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("SPA-SP");
- } else if (areaCode.equals("FI")) {
- tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("FIN-OO");
- } else if (areaCode.equals("FR-COR")) {
- tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("COR-OO");
- } else if (areaCode.equals("FR-FRA")) {
- tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("FRA-FR");
- } else if (areaCode.equals("GB-CI")) {
- tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("FRA-CI");
- } else if (areaCode.equals("GB-GI")) {
- tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("SPA-GI");
- } else if (areaCode.equals("GB-GRB")) {
- tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("GRB-OO");
- } else if (areaCode.equals("GB-NI")) {
- tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("IRE-NI");
- } else if (areaCode.equals("GR-GRC")) {
- tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("GRC-OO");
- } else if (areaCode.equals("HR")) {
- tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("YUG-CR");
- } else if (areaCode.equals("HU")) {
- tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("HUN-OO");
- } else if (areaCode.equals("IE")) {
- tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("IRE-IR");
- } else if (areaCode.equals("IS")) {
- tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("ICE-OO");
- } else if (areaCode.equals("IT-ITA")) {
- tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("ITA-IT");
- } else if (areaCode.equals("IT-SAR")) {
- tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("SAR-OO");
- } else if (areaCode.equals("IT-SI")) {
- tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("SIC-SI");
- } else if (areaCode.equals("LI")) {
- tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("AUT-LI");
- } else if (areaCode.equals("LT")) {
- tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("BLT-LI");
- } else if (areaCode.equals("LU")) {
- tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("BGM-LU");
- } else if (areaCode.equals("LV")) {
- tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("BLT-LA");
- } else if (areaCode.equals("MC")) {
- tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("FRA-MO");
- } else if (areaCode.equals("MD")) {
- tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("UKR-MO");
- } else if (areaCode.equals("MK")) {
- tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("YUG-MA");
- } else if (areaCode.equals("MT")) {
- tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("SIC-MA");
- } else if (areaCode.equals("NL")) {
- tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("NET-OO");
- } else if (areaCode.equals("NO-NOR")) {
- tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("NOR-OO");
- } else if (areaCode.equals("NO-SVA")) {
- tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("SVA-OO");
- } else if (areaCode.equals("PL")) {
- tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("POL-OO");
- } else if (areaCode.equals("PT-AZO")) {
- tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("AZO-OO");
- } else if (areaCode.equals("PT-MDR")) {
- tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("MDR-OO");
- } else if (areaCode.equals("PT-POR")) {
- tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("POR-OO");
- } else if (areaCode.equals("PT-SEL")) {
- tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("SEL-OO");
- } else if (areaCode.equals("RO")) {
- tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("ROM-OO");
- } else if (areaCode.equals("RU-KGD")) {
- tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("BLT-KA");
- } else if (areaCode.equals("RU-RUC")) {
- tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("RUC-OO");
- } else if (areaCode.equals("RU-RUE")) {
- tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("RUE-OO");
- } else if (areaCode.equals("RU-RUN")) {
- tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("RUN-OO");
- } else if (areaCode.equals("RU-RUS")) {
- tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("RUS-OO");
- } else if (areaCode.equals("RU-RUW")) {
- tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("RUW-OO");
- } else if (areaCode.equals("SE")) {
- tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("SWE-OO");
- } else if (areaCode.equals("SI")) {
- tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("YUG-SL");
- } else if (areaCode.equals("SK")) {
- tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("CZE-SK");
- } else if (areaCode.equals("SM")) {
- tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("ITA-SM");
- } else if (areaCode.equals("TR-TUE")) {
- tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("TUE-OO");
- //else if (areaCode.equals("UA")) tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("UKR-UK"); //UKraine including Crimea
- } else if (areaCode.equals("VA")) {
- tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("ITA-VC");
- } else if (areaCode.equals("YU")) {
- tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("YUG");
- } else {
- throw new UnknownCdmTypeException("Unknown Area " + areaCode);
- }
-
- if (logger.isDebugEnabled()) {
- logger.debug(areaId + ", " + areaName + ", " + areaCode + ", " + extraLimital);
- }
-
- } catch (Exception e) {
- //e.printStackTrace();
- logger.debug("Exception occurred. Area could not be mapped." + fauEuDistribution.getAreaName());
- return null;
- }
-
- return tdwgArea;
- }
-
- public static UUID uuidAreaAUS = UUID.fromString("cf979ca8-8cb6-42df-b2ce-1f432ec7c26b");
- public static UUID uuidAreaAFR = UUID.fromString("07ac5e75-9fc9-4aa0-938c-1324c9618b97");
- public static UUID uuidAreaEPA = UUID.fromString("e83446d7-7379-4beb-be05-295f8da6f5ae");
- public static UUID uuidAreaGR_AEG = UUID.fromString("6bd422aa-9911-4b80-8595-0f6d1ecd5eee");
- public static UUID uuidAreaGR_CYC = UUID.fromString("8e7d7f1e-3e4d-4f7c-96ec-93ec91e528d6");
- public static UUID uuidAreaGR_DOD = UUID.fromString("6d6f6842-924e-440b-9e7e-3df1922bf4a6");
- public static UUID uuidAreaNAF = UUID.fromString("d2c54b1e-5f9f-455d-b308-6859cb153c7b");
- public static UUID uuidAreaNEA = UUID.fromString("aa87f6b8-110b-44b5-a329-91a08f1a4cc9");
- public static UUID uuidAreaNEO = UUID.fromString("0e6e0ce9-c6ab-46bc-80b9-aee4a0620e78");
- public static UUID uuidAreaNRE = UUID.fromString("d51876c2-eaf6-4c7f-963e-337dd3e0d729");
- public static UUID uuidAreaORR = UUID.fromString("04cab4f8-b316-4e21-9bcc-236a45e4e83d");
- public static UUID uuidAreaGR_CR = UUID.fromString("2ef9fa6c-7c3f-431a-96c9-5980c55fc440");
- public static UUID uuidAreaGR_GRC = UUID.fromString("b5d33c78-91e7-467a-9c2d-6c337b78d31a");
- public static UUID uuidAreaUA = UUID.fromString("859cf055-a208-4f30-8e6e-361f165c6fa9");
- public static UUID uuidAreaRU_FJL = UUID.fromString("84671068-2f18-40cb-933a-e7e1c0e37cc8");
- public static UUID uuidAreaRU_NOZ = UUID.fromString("64cce0aa-0222-4740-8fa2-dbf0330e9266");
-
-
- public final static HashMap<String, UUID> abbrToUUID = new HashMap<String,UUID>();
- static
- {
- abbrToUUID.put("AUS", uuidAreaAUS);
- abbrToUUID.put("AFR", uuidAreaAFR);
- abbrToUUID.put("EPA", uuidAreaEPA);
- abbrToUUID.put("GR-AEG", uuidAreaGR_AEG);
- abbrToUUID.put("GR-CYC", uuidAreaGR_CYC);
- abbrToUUID.put("GR-DOD", uuidAreaGR_DOD);
- abbrToUUID.put("NAF", uuidAreaNAF);
- abbrToUUID.put("NEA", uuidAreaNEA);
- abbrToUUID.put("NEO", uuidAreaNEO);
- abbrToUUID.put("NRE", uuidAreaNRE);
- abbrToUUID.put("ORR", uuidAreaORR);
- abbrToUUID.put("GR-KRI", uuidAreaGR_CR);
- abbrToUUID.put("GR-GRC", uuidAreaGR_GRC);
- abbrToUUID.put("UA", uuidAreaUA);
- abbrToUUID.put("RU-FJL", uuidAreaRU_FJL);
- abbrToUUID.put("RU-NOZ", uuidAreaRU_NOZ);
-
-
- }
-
- public final static HashMap<Integer, Language> languageFK2Language = new HashMap<Integer,Language>();
- static
- {
- languageFK2Language.put(10, Language.DANISH());
- languageFK2Language.put(19, Language.GREEK_MODERN());
- languageFK2Language.put(18, Language.GERMAN());
- languageFK2Language.put(59, Language.UKRAINIAN());
- languageFK2Language.put(83, Language.ENGLISH());
- languageFK2Language.put(58, Language.TURKISH());
- languageFK2Language.put(26, Language.LITHUANIAN());
- languageFK2Language.put(34, Language.RUSSIAN());
- languageFK2Language.put(55, Language.SLOVENIAN());
- languageFK2Language.put(57, Language.SWEDISH());
- languageFK2Language.put(11, Language.DUTCH_MIDDLE());
- languageFK2Language.put(100, Language.NORWEGIAN_BOKMOL());
- languageFK2Language.put(101, Language.NORWEGIAN_NYNORSK());
-
-
-
- }
- public static UUID getUUIDByAreaAbbr(String abbr){
- return abbrToUUID.get(abbr);
- }
-
- public static UUID uuidNomStatusTempNamed = UUID.fromString("aa6ada5a-ca21-4fef-b76f-9ae237e9c4ae");
-
- static NomenclaturalStatusType nomStatusTempNamed;
-
- private static DefinedTerm taxonomicSpecialistType;
-
- private static UUID uuidTaxonomicSpecialistType = UUID.fromString("006879e4-cf99-405a-a720-2e81d9cbc34c");
-
- private static DefinedTerm groupCoordinatorType;
-
- private static UUID uuidGroupCoordinatorType = UUID.fromString("3a827ebe-4410-40e5-a241-941b17028e11");
-
- private static DefinedTerm associateSpecialistType;
-
- private static UUID uuidAssociateSpecialistType = UUID.fromString("8258f73c-e0ad-4f87-a88c-53c58c08bba9");
-
- public static NomenclaturalStatusType getNomStatusTempNamed(ITermService termService){
- if (nomStatusTempNamed == null){
- nomStatusTempNamed = (NomenclaturalStatusType)termService.find(uuidNomStatusTempNamed);
- if (nomStatusTempNamed == null){
- nomStatusTempNamed = NomenclaturalStatusType.NewInstance("temporary named", "temporary named", "temp. named", Language.ENGLISH());
- Representation repLatin = Representation.NewInstance("", "", "", Language.LATIN());
- nomStatusTempNamed.addRepresentation(repLatin);
- nomStatusTempNamed.setUuid(uuidNomStatusTempNamed);
- NomenclaturalStatusType.ALTERNATIVE().getVocabulary().addTerm(nomStatusTempNamed);
- termService.save(nomStatusTempNamed);
- }
- }
- return nomStatusTempNamed;
- }
- /**
- * @return
- */
- public static DefinedTerm getTaxonomicSpecialistType(ITermService termService) {
- if (taxonomicSpecialistType == null){
- taxonomicSpecialistType = (DefinedTerm)termService.find(uuidTaxonomicSpecialistType);
- if (taxonomicSpecialistType == null){
- taxonomicSpecialistType = DefinedTerm.NewInstance(TermType.TaxonNodeAgentRelationType, "taxonomic specialist", "taxonomic specialist", "TS");
-
- taxonomicSpecialistType.setUuid(uuidTaxonomicSpecialistType);
-
- termService.save(taxonomicSpecialistType);
- }
- }
- return taxonomicSpecialistType;
- }
- /**
- * @return
- */
- public static DefinedTerm getGroupCoordinatorType(ITermService termService) {
- if (groupCoordinatorType == null){
- groupCoordinatorType = (DefinedTerm)termService.find(uuidGroupCoordinatorType);
- if (groupCoordinatorType == null){
- groupCoordinatorType = DefinedTerm.NewInstance(TermType.TaxonNodeAgentRelationType, "group coordinator", "group coordinator", "GC");
-
- groupCoordinatorType.setUuid(uuidGroupCoordinatorType);
-
- termService.save(groupCoordinatorType);
- }
- }
- return groupCoordinatorType;
- }
-
- /**
- * @return
- */
- public static DefinedTerm getAssociateSpecialistType(ITermService termService) {
- if (associateSpecialistType == null){
- associateSpecialistType = (DefinedTerm)termService.find(uuidAssociateSpecialistType);
- if (associateSpecialistType == null){
- associateSpecialistType = DefinedTerm.NewInstance(TermType.TaxonNodeAgentRelationType, "associate specialist", "associate specialist", "AS");
-
- associateSpecialistType.setUuid(uuidAssociateSpecialistType);
-
- termService.save(associateSpecialistType);
- }
- }
- return associateSpecialistType;
- }
- public static Language langFK2Language(
- int languageFk) {
-
- return null;
- }
-
-
-}
+/**\r
+* Copyright (C) 2007 EDIT\r
+* European Distributed Institute of Taxonomy\r
+* http://www.e-taxonomy.eu\r
+*\r
+* The contents of this file are subject to the Mozilla Public License Version 1.1\r
+* See LICENSE.TXT at the top of this package for the full license terms.\r
+*/\r
+\r
+package eu.etaxonomy.cdm.io.pesi.faunaEuropaea;\r
+\r
+import java.sql.ResultSet;\r
+import java.sql.SQLException;\r
+import java.util.HashMap;\r
+import java.util.UUID;\r
+\r
+import org.apache.log4j.Logger;\r
+\r
+import eu.etaxonomy.cdm.api.application.CdmApplicationUtils;\r
+import eu.etaxonomy.cdm.api.service.ITermService;\r
+import eu.etaxonomy.cdm.io.common.TdwgAreaProvider;\r
+import eu.etaxonomy.cdm.model.common.DefinedTerm;\r
+import eu.etaxonomy.cdm.model.common.LSID;\r
+import eu.etaxonomy.cdm.model.common.Language;\r
+import eu.etaxonomy.cdm.model.common.Representation;\r
+import eu.etaxonomy.cdm.model.common.TermType;\r
+import eu.etaxonomy.cdm.model.description.PresenceAbsenceTerm;\r
+import eu.etaxonomy.cdm.model.location.NamedArea;\r
+import eu.etaxonomy.cdm.model.name.NomenclaturalStatusType;\r
+import eu.etaxonomy.cdm.model.name.Rank;\r
+import eu.etaxonomy.cdm.strategy.exceptions.UnknownCdmTypeException;\r
+\r
+/**\r
+ * @author a.babadshanjan\r
+ * @created 12.05.2009\r
+ * @version 1.0\r
+ */\r
+\r
+public final class FaunaEuropaeaTransformer {\r
+ private static final Logger logger = Logger.getLogger(FaunaEuropaeaTransformer.class);\r
+\r
+ // Query\r
+ public static final int Q_NO_RESTRICTION = -1;\r
+\r
+ // TaxonStatus\r
+ public static final int T_STATUS_ACCEPTED = 1;\r
+ public static final int T_STATUS_NOT_ACCEPTED = 0;\r
+\r
+ // Author\r
+ public static final int A_AUCT = 1;\r
+ public static final String A_AUCTNAME = "auct.";\r
+\r
+ // Parenthesis\r
+ public static final int P_PARENTHESIS = 1;\r
+\r
+ // User\r
+\r
+ public static final int U_ACTIVE = 1;\r
+\r
+ //new AbsencePresenceTermUUIDs\r
+\r
+ public static UUID noData;\r
+ //public static UUID doubtfull_present;\r
+\r
+ // Rank\r
+ public static final int R_KINGDOM = 1;\r
+ public static final int R_SUBKINGDOM = 2;\r
+ public static final int R_SUPERPHYLUM = 3;\r
+ public static final int R_PHYLUM = 4;\r
+ public static final int R_SUBPHYLUM = 5;\r
+ public static final int R_INFRAPHYLUM = 6;\r
+ public static final int R_CLASS = 7;\r
+ public static final int R_SUBCLASS = 8;\r
+ public static final int R_INFRACLASS = 9;\r
+ public static final int R_SUPERORDER = 10;\r
+ public static final int R_ORDER = 11;\r
+ public static final int R_SUBORDER = 12;\r
+ public static final int R_INFRAORDER = 13;\r
+ public static final int R_SUPERFAMILY = 14;\r
+ public static final int R_FAMILY = 15;\r
+ public static final int R_SUBFAMILY = 16;\r
+ public static final int R_TRIBE = 17;\r
+ public static final int R_SUBTRIBE = 18;\r
+ public static final int R_GENUS = 19;\r
+ public static final int R_SUBGENUS = 20;\r
+ public static final int R_SPECIES = 21;\r
+ public static final int R_SUBSPECIES = 22;\r
+\r
+ public static PresenceAbsenceTerm occStatus2PresenceAbsence(int occStatusId) throws UnknownCdmTypeException{\r
+\r
+ if (Integer.valueOf(occStatusId) == null) {\r
+ return PresenceAbsenceTerm.PRESENT();\r
+ }\r
+ switch (occStatusId){\r
+ case 0: return PresenceAbsenceTerm.PRESENT();\r
+ case 2: return PresenceAbsenceTerm.ABSENT();\r
+ case 1: return PresenceAbsenceTerm.PRESENT_DOUBTFULLY();\r
+\r
+ default: {\r
+\r
+ return null;\r
+\r
+\r
+ }\r
+\r
+ }\r
+ }\r
+ public static void setUUIDs(UUID uuid){\r
+ noData = uuid;\r
+ //doubtfull_present = uuids.get("doubtfullPresent");\r
+\r
+ }\r
+\r
+ public static PresenceAbsenceTerm occStatus2PresenceAbsence_ (int occStatusId) throws UnknownCdmTypeException{\r
+ switch (occStatusId){\r
+ case 0: return null;\r
+ //case 110: return AbsenceTerm.CULTIVATED_REPORTED_IN_ERROR();\r
+ case 120: return PresenceAbsenceTerm.CULTIVATED();\r
+ // case 210: return AbsenceTerm.INTRODUCED_REPORTED_IN_ERROR();\r
+ case 220: return PresenceAbsenceTerm.INTRODUCED_PRESENCE_QUESTIONABLE();\r
+ case 230: return PresenceAbsenceTerm.INTRODUCED_FORMERLY_INTRODUCED();\r
+ case 240: return PresenceAbsenceTerm.INTRODUCED_DOUBTFULLY_INTRODUCED();\r
+ case 250: return PresenceAbsenceTerm.INTRODUCED();\r
+ case 260: return PresenceAbsenceTerm.INTRODUCED_UNCERTAIN_DEGREE_OF_NATURALISATION();\r
+ case 270: return PresenceAbsenceTerm.INTRODUCED_ADVENTITIOUS();\r
+ case 280: return PresenceAbsenceTerm.INTRODUCED_NATURALIZED();\r
+ //case 310: return AbsenceTerm.NATIVE_REPORTED_IN_ERROR();\r
+ case 320: return PresenceAbsenceTerm.NATIVE_PRESENCE_QUESTIONABLE();\r
+ case 330: return PresenceAbsenceTerm.NATIVE_FORMERLY_NATIVE();\r
+ case 340: return PresenceAbsenceTerm.NATIVE_DOUBTFULLY_NATIVE();\r
+ case 350: return PresenceAbsenceTerm.NATIVE();\r
+ case 999: {\r
+ logger.warn("endemic for EM can not be transformed in legal status");\r
+ //TODO preliminary\r
+ return PresenceAbsenceTerm.PRESENT();\r
+ }\r
+ default: {\r
+ throw new UnknownCdmTypeException("Unknown occurrence status (id=" + Integer.valueOf(occStatusId).toString() + ")");\r
+ }\r
+ }\r
+ }\r
+\r
+\r
+ public static Rank rankId2Rank (ResultSet rs, boolean useUnknown) throws UnknownCdmTypeException {\r
+ Rank result;\r
+ try {\r
+ int rankId = rs.getInt("rnk_id");\r
+ int parentRankId = rs.getInt("rnk_rnk_id");\r
+ String rankName = rs.getString("rnk_name");\r
+ String rankLatinName = rs.getString("rnk_latinname");\r
+ int rankCategory = rs.getInt("rnk_category");\r
+\r
+ if (logger.isDebugEnabled()) {\r
+ logger.debug(rankId + ", " + parentRankId + ", " + rankName + ", " + rankCategory);\r
+ }\r
+\r
+ try {\r
+ result = Rank.getRankByNameOrIdInVoc(rankName);\r
+ } catch (UnknownCdmTypeException e1) {\r
+\r
+ switch (rankId) {\r
+ case 0: return null;\r
+ case R_KINGDOM: return Rank.KINGDOM();\r
+ case R_SUBKINGDOM: return Rank.SUBKINGDOM();\r
+ case R_SUPERPHYLUM: return Rank.SUPERPHYLUM();\r
+ case R_PHYLUM: return Rank.PHYLUM();\r
+ case R_SUBPHYLUM: return Rank.SUBPHYLUM();\r
+ case R_INFRAPHYLUM: return Rank.INFRAPHYLUM();\r
+ case R_CLASS: return Rank.CLASS();\r
+ case R_SUBCLASS: return Rank.SUBCLASS();\r
+ case R_INFRACLASS: return Rank.INFRACLASS();\r
+ case R_SUPERORDER: return Rank.SUPERORDER();\r
+ case R_ORDER: return Rank.ORDER();\r
+ case R_SUBORDER: return Rank.SUBORDER();\r
+ case R_INFRAORDER: return Rank.INFRAORDER();\r
+ case R_SUPERFAMILY: return Rank.SUPERFAMILY();\r
+ case R_FAMILY: return Rank.FAMILY();\r
+ case R_SUBFAMILY: return Rank.SUBFAMILY();\r
+ case R_TRIBE: return Rank.TRIBE();\r
+ case R_SUBTRIBE: return Rank.SUBTRIBE();\r
+ case R_GENUS: return Rank.GENUS();\r
+ case R_SUBGENUS: return Rank.SUBGENUS();\r
+ case R_SPECIES: return Rank.SPECIES();\r
+ case R_SUBSPECIES: return Rank.SUBSPECIES();\r
+\r
+ default: {\r
+ if (useUnknown){\r
+ logger.error("Rank unknown. Created UNKNOWN_RANK");\r
+ return Rank.UNKNOWN_RANK();\r
+ }\r
+ throw new UnknownCdmTypeException("Unknown Rank id" + Integer.valueOf(rankId).toString());\r
+ }\r
+ }\r
+ }\r
+ return result;\r
+ } catch (SQLException e) {\r
+ e.printStackTrace();\r
+ logger.warn("Exception occurred. Created UNKNOWN_RANK instead");\r
+ return Rank.UNKNOWN_RANK();\r
+ }\r
+ }\r
+\r
+\r
+ public static NamedArea areaId2TdwgArea (FaunaEuropaeaDistribution fauEuDistribution)\r
+ throws UnknownCdmTypeException {\r
+\r
+ NamedArea tdwgArea = null;\r
+\r
+ try {\r
+ int areaId = fauEuDistribution.getAreaId();\r
+ String areaName = fauEuDistribution.getAreaName();\r
+ String areaCode = fauEuDistribution.getAreaCode();\r
+ int extraLimital = fauEuDistribution.getExtraLimital();\r
+\r
+ //TODO: Verify mappings with comments. Those don't map to TDWG areas.\r
+\r
+ if (areaCode.equals("AD")) {\r
+ tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("SPA-AN");\r
+ } else if (areaCode.equals("AL")) {\r
+ tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("ALB-OO");\r
+ } else if (areaCode.equals("AT")) {\r
+ tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("AUT-AU");\r
+ } else if (areaCode.equals("AUS")) {\r
+ tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("AUS"); // Australian region - Australia\r
+ } else if (areaCode.equals("BA")) {\r
+ tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("YUG-BH");\r
+ } else if (areaCode.equals("BE")) {\r
+ tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("BGM-BE");\r
+ } else if (areaCode.equals("BG")) {\r
+ tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("BUL-OO");\r
+ } else if (areaCode.equals("BY")) {\r
+ tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("BLR-OO");\r
+ } else if (areaCode.equals("CH")) {\r
+ tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("SWI-OO");\r
+ } else if (areaCode.equals("CY")) {\r
+ tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("CYP-OO");\r
+ } else if (areaCode.equals("CZ")) {\r
+ tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("CZE-CZ");\r
+ } else if (areaCode.equals("DE")) {\r
+ tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("GER-OO");\r
+ } else if (areaCode.equals("DK-DEN")) {\r
+ tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("DEN-OO");\r
+ } else if (areaCode.equals("DK-FOR")) {\r
+ tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("FOR-OO");\r
+ } else if (areaCode.equals("EE")) {\r
+ tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("BLT-ES");\r
+ } else if (areaCode.equals("ES-BAL")) {\r
- tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("BLT-ES");\r
++ tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("BAL-OO");\r
+ } else if (areaCode.equals("ES-CNY")) {\r
+ tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("CNY-OO");\r
+ } else if (areaCode.equals("ES-SPA")) {\r
+ tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("SPA-SP");\r
+ } else if (areaCode.equals("FI")) {\r
+ tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("FIN-OO");\r
+ } else if (areaCode.equals("FR-COR")) {\r
+ tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("COR-OO");\r
+ } else if (areaCode.equals("FR-FRA")) {\r
+ tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("FRA-FR");\r
+ } else if (areaCode.equals("GB-CI")) {\r
+ tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("FRA-CI");\r
+ } else if (areaCode.equals("GB-GI")) {\r
+ tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("SPA-GI");\r
+ } else if (areaCode.equals("GB-GRB")) {\r
+ tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("GRB-OO");\r
+ } else if (areaCode.equals("GB-NI")) {\r
+ tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("IRE-NI");\r
+ } else if (areaCode.equals("GR-GRC")) {\r
+ tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("GRC-OO");\r
+ } else if (areaCode.equals("HR")) {\r
+ tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("YUG-CR");\r
+ } else if (areaCode.equals("HU")) {\r
+ tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("HUN-OO");\r
+ } else if (areaCode.equals("IE")) {\r
+ tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("IRE-IR");\r
+ } else if (areaCode.equals("IS")) {\r
+ tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("ICE-OO");\r
+ } else if (areaCode.equals("IT-ITA")) {\r
+ tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("ITA-IT");\r
+ } else if (areaCode.equals("IT-SAR")) {\r
+ tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("SAR-OO");\r
+ } else if (areaCode.equals("IT-SI")) {\r
+ tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("SIC-SI");\r
+ } else if (areaCode.equals("LI")) {\r
+ tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("AUT-LI");\r
+ } else if (areaCode.equals("LT")) {\r
+ tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("BLT-LI");\r
+ } else if (areaCode.equals("LU")) {\r
+ tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("BGM-LU");\r
+ } else if (areaCode.equals("LV")) {\r
+ tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("BLT-LA");\r
+ } else if (areaCode.equals("MC")) {\r
+ tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("FRA-MO");\r
+ } else if (areaCode.equals("MD")) {\r
+ tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("UKR-MO");\r
+ } else if (areaCode.equals("MK")) {\r
+ tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("YUG-MA");\r
+ } else if (areaCode.equals("MT")) {\r
+ tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("SIC-MA");\r
+ } else if (areaCode.equals("NL")) {\r
+ tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("NET-OO");\r
+ } else if (areaCode.equals("NO-NOR")) {\r
+ tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("NOR-OO");\r
+ } else if (areaCode.equals("NO-SVA")) {\r
+ tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("SVA-OO");\r
+ } else if (areaCode.equals("PL")) {\r
+ tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("POL-OO");\r
+ } else if (areaCode.equals("PT-AZO")) {\r
+ tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("AZO-OO");\r
+ } else if (areaCode.equals("PT-MDR")) {\r
+ tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("MDR-OO");\r
+ } else if (areaCode.equals("PT-POR")) {\r
+ tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("POR-OO");\r
+ } else if (areaCode.equals("PT-SEL")) {\r
+ tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("SEL-OO");\r
+ } else if (areaCode.equals("RO")) {\r
+ tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("ROM-OO");\r
+ } else if (areaCode.equals("RU-KGD")) {\r
+ tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("BLT-KA");\r
+ } else if (areaCode.equals("RU-RUC")) {\r
+ tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("RUC-OO");\r
+ } else if (areaCode.equals("RU-RUE")) {\r
+ tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("RUE-OO");\r
+ } else if (areaCode.equals("RU-RUN")) {\r
+ tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("RUN-OO");\r
+ } else if (areaCode.equals("RU-RUS")) {\r
+ tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("RUS-OO");\r
+ } else if (areaCode.equals("RU-RUW")) {\r
+ tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("RUW-OO");\r
+ } else if (areaCode.equals("SE")) {\r
+ tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("SWE-OO");\r
+ } else if (areaCode.equals("SI")) {\r
+ tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("YUG-SL");\r
+ } else if (areaCode.equals("SK")) {\r
+ tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("CZE-SK");\r
+ } else if (areaCode.equals("SM")) {\r
+ tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("ITA-SM");\r
+ } else if (areaCode.equals("TR-TUE")) {\r
+ tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("TUE-OO");\r
+ }else if (areaCode.equals("UA")) {\r
+ tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("UKR-UK"); //UKraine including Crimea\r
+ } else if (areaCode.equals("VA")) {\r
+ tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("ITA-VC");\r
+ } else if (areaCode.equals("YU")) {\r
+ tdwgArea = TdwgAreaProvider.getAreaByTdwgAbbreviation("YUG");\r
+ } else {\r
+ throw new UnknownCdmTypeException("Unknown Area " + areaCode);\r
+ }\r
+\r
+ if (logger.isDebugEnabled()) {\r
+ logger.debug(areaId + ", " + areaName + ", " + areaCode + ", " + extraLimital);\r
+ }\r
+\r
+ } catch (Exception e) {\r
+ //e.printStackTrace();\r
+ logger.debug("Exception occurred. Area could not be mapped." + fauEuDistribution.getAreaName());\r
+ return null;\r
+ }\r
+\r
+ return tdwgArea;\r
+ }\r
+\r
+ public static UUID uuidAreaAUS = UUID.fromString("cf979ca8-8cb6-42df-b2ce-1f432ec7c26b");\r
+ public static UUID uuidAreaAFR = UUID.fromString("07ac5e75-9fc9-4aa0-938c-1324c9618b97");\r
+ public static UUID uuidAreaEPA = UUID.fromString("e83446d7-7379-4beb-be05-295f8da6f5ae");\r
+ public static UUID uuidAreaGR_AEG = UUID.fromString("6bd422aa-9911-4b80-8595-0f6d1ecd5eee");\r
+ public static UUID uuidAreaGR_CYC = UUID.fromString("8e7d7f1e-3e4d-4f7c-96ec-93ec91e528d6");\r
+ public static UUID uuidAreaGR_DOD = UUID.fromString("6d6f6842-924e-440b-9e7e-3df1922bf4a6");\r
+ public static UUID uuidAreaNAF = UUID.fromString("d2c54b1e-5f9f-455d-b308-6859cb153c7b");\r
+ public static UUID uuidAreaNEA = UUID.fromString("aa87f6b8-110b-44b5-a329-91a08f1a4cc9");\r
+ public static UUID uuidAreaNEO = UUID.fromString("0e6e0ce9-c6ab-46bc-80b9-aee4a0620e78");\r
+ public static UUID uuidAreaNRE = UUID.fromString("d51876c2-eaf6-4c7f-963e-337dd3e0d729");\r
+ public static UUID uuidAreaORR = UUID.fromString("04cab4f8-b316-4e21-9bcc-236a45e4e83d");\r
+ public static UUID uuidAreaGR_CR = UUID.fromString("2ef9fa6c-7c3f-431a-96c9-5980c55fc440");\r
+ public static UUID uuidAreaGR_GRC = UUID.fromString("b5d33c78-91e7-467a-9c2d-6c337b78d31a");\r
+ public static UUID uuidAreaUA = UUID.fromString("859cf055-a208-4f30-8e6e-361f165c6fa9");\r
+ public static UUID uuidAreaRU_FJL = UUID.fromString("84671068-2f18-40cb-933a-e7e1c0e37cc8");\r
+ public static UUID uuidAreaRU_NOZ = UUID.fromString("64cce0aa-0222-4740-8fa2-dbf0330e9266");\r
+\r
+\r
+ public final static HashMap<String, UUID> abbrToUUID = new HashMap<String,UUID>();\r
+ static\r
+ {\r
+ abbrToUUID.put("AUS", uuidAreaAUS);\r
+ abbrToUUID.put("AFR", uuidAreaAFR);\r
+ abbrToUUID.put("EPA", uuidAreaEPA);\r
+ abbrToUUID.put("GR-AEG", uuidAreaGR_AEG);\r
+ abbrToUUID.put("GR-CYC", uuidAreaGR_CYC);\r
+ abbrToUUID.put("GR-DOD", uuidAreaGR_DOD);\r
+ abbrToUUID.put("NAF", uuidAreaNAF);\r
+ abbrToUUID.put("NEA", uuidAreaNEA);\r
+ abbrToUUID.put("NEO", uuidAreaNEO);\r
+ abbrToUUID.put("NRE", uuidAreaNRE);\r
+ abbrToUUID.put("ORR", uuidAreaORR);\r
+ abbrToUUID.put("GR-KRI", uuidAreaGR_CR);\r
+ abbrToUUID.put("GR-GRC", uuidAreaGR_GRC);\r
+ abbrToUUID.put("UA", uuidAreaUA);\r
+ abbrToUUID.put("RU-FJL", uuidAreaRU_FJL);\r
+ abbrToUUID.put("RU-NOZ", uuidAreaRU_NOZ);\r
+\r
+\r
+ }\r
+ \r
+ public final static HashMap<Integer, Language> languageFK2Language = new HashMap<Integer,Language>();\r
+ static\r
+ {\r
+ languageFK2Language.put(1, Language.ALBANIAN());\r
+ languageFK2Language.put(4, Language.AZERBAIJANI());\r
+ languageFK2Language.put(6, Language.BULGARIAN());\r
+ languageFK2Language.put(10, Language.DANISH());\r
+ languageFK2Language.put(11, Language.DUTCH_MIDDLE());\r
+ languageFK2Language.put(12, Language.ENGLISH());\r
+ languageFK2Language.put(16, Language.FRENCH());\r
+ \r
+ languageFK2Language.put(18, Language.GERMAN());\r
+ languageFK2Language.put(19, Language.GREEK_MODERN());\r
+ languageFK2Language.put(23, Language.HEBREW());\r
+ languageFK2Language.put(24, Language.ITALIAN());\r
+ languageFK2Language.put(26, Language.LITHUANIAN());\r
+ languageFK2Language.put(30, Language.NORWEGIAN());\r
+ languageFK2Language.put(31, Language.POLISH());\r
+ languageFK2Language.put(34, Language.RUSSIAN());\r
+ languageFK2Language.put(54, Language.SLOVAK());\r
+ languageFK2Language.put(55, Language.SLOVENIAN());\r
+ languageFK2Language.put(57, Language.SWEDISH());\r
+ languageFK2Language.put(58, Language.TURKISH());\r
+ \r
+ languageFK2Language.put(59, Language.UKRAINIAN());\r
+ languageFK2Language.put(60, Language.WELSH());\r
+ languageFK2Language.put(62, Language.GALICIAN());\r
+ //languageFK2Language.put(83, getEnglishUS());\r
+ languageFK2Language.put(97, Language.IRISH());\r
+ \r
+ \r
+ languageFK2Language.put(100, Language.NORWEGIAN_BOKMOL());\r
+ languageFK2Language.put(101, Language.NORWEGIAN_NYNORSK());\r
+ \r
+ languageFK2Language.put(102, Language.ARABIC());\r
+ languageFK2Language.put(103, Language.ARMENIAN());\r
+ \r
+ languageFK2Language.put(104, Language.CATALAN_VALENCIAN());\r
+ languageFK2Language.put(105, Language.CHINESE());\r
+ languageFK2Language.put(106, Language.ESTONIAN());\r
+ languageFK2Language.put(107, Language.FINNISH());\r
+ \r
+ languageFK2Language.put(108, Language.GAELIC_SCOTTISH_GAELIC());\r
+ languageFK2Language.put(109, Language.JAPANESE());\r
+ languageFK2Language.put(110, Language.KOREAN());\r
+ languageFK2Language.put(111, Language.LATIN());\r
+ languageFK2Language.put(112, Language.LATVIAN());\r
+ languageFK2Language.put(113, Language.PERSIAN());\r
+ languageFK2Language.put(114, Language.PORTUGUESE());\r
+ languageFK2Language.put(115, Language.ROMANIAN());\r
+ languageFK2Language.put(117, Language.SWAHILI());\r
+ languageFK2Language.put(118, Language.SPANISH_CASTILIAN());\r
+ \r
+ \r
+ \r
+\r
+\r
+ } \r
+ public static UUID getUUIDByAreaAbbr(String abbr){\r
+ return abbrToUUID.get(abbr);\r
+ }\r
+\r
+ public static UUID uuidNomStatusTempNamed = UUID.fromString("aa6ada5a-ca21-4fef-b76f-9ae237e9c4ae");\r
+\r
+ static NomenclaturalStatusType nomStatusTempNamed;\r
+\r
+ private static DefinedTerm taxonomicSpecialistType;\r
+\r
+ private static UUID uuidTaxonomicSpecialistType = UUID.fromString("006879e4-cf99-405a-a720-2e81d9cbc34c");\r
+\r
+ private static DefinedTerm groupCoordinatorType;\r
+\r
+ private static UUID uuidGroupCoordinatorType = UUID.fromString("3a827ebe-4410-40e5-a241-941b17028e11");\r
+\r
+ private static DefinedTerm associateSpecialistType;\r
+\r
+ private static UUID uuidAssociateSpecialistType = UUID.fromString("8258f73c-e0ad-4f87-a88c-53c58c08bba9");\r
+\r
+ private static Language langEnglishUS;\r
+\r
+ private static UUID uuidEnglishUS;\r
+\r
+\r
+\r
+ public static NomenclaturalStatusType getNomStatusTempNamed(ITermService termService){\r
+ if (nomStatusTempNamed == null){\r
+ nomStatusTempNamed = (NomenclaturalStatusType)termService.find(uuidNomStatusTempNamed);\r
+ if (nomStatusTempNamed == null){\r
+ nomStatusTempNamed = NomenclaturalStatusType.NewInstance("temporary named", "temporary named", "temp. named", Language.ENGLISH());\r
+ Representation repLatin = Representation.NewInstance("", "", "", Language.LATIN());\r
+ nomStatusTempNamed.addRepresentation(repLatin);\r
+ nomStatusTempNamed.setUuid(uuidNomStatusTempNamed);\r
+ NomenclaturalStatusType.ALTERNATIVE().getVocabulary().addTerm(nomStatusTempNamed);\r
+ termService.save(nomStatusTempNamed);\r
+ }\r
+ }\r
+ return nomStatusTempNamed;\r
+ }\r
+ \r
+ public static Language getEnglishUS(ITermService termService){\r
+ if (langEnglishUS == null){\r
+ langEnglishUS = (Language)termService.find(uuidEnglishUS);\r
+ if (langEnglishUS == null){\r
+ logger.info("create language english-us");\r
+ langEnglishUS = Language.NewInstance("english-United States", "english-US", "eng-US");\r
+ langEnglishUS.setUuid(uuidEnglishUS);\r
+\r
+ langEnglishUS = (Language)termService.save(langEnglishUS);\r
+ languageFK2Language.put(83, langEnglishUS);\r
+ }\r
+ }\r
+ return langEnglishUS;\r
+ }\r
+ /**\r
+ * @return\r
+ */\r
+ public static DefinedTerm getTaxonomicSpecialistType(ITermService termService) {\r
+ if (taxonomicSpecialistType == null){\r
+ taxonomicSpecialistType = (DefinedTerm)termService.find(uuidTaxonomicSpecialistType);\r
+ if (taxonomicSpecialistType == null){\r
+ logger.info("create associated specialist type");\r
+ taxonomicSpecialistType = DefinedTerm.NewInstance(TermType.TaxonNodeAgentRelationType, "taxonomic specialist", "taxonomic specialist", "TS");\r
+\r
+ taxonomicSpecialistType.setUuid(uuidTaxonomicSpecialistType);\r
+\r
+ termService.save(taxonomicSpecialistType);\r
+ }\r
+ }\r
+ return taxonomicSpecialistType;\r
+ }\r
- \r
- \r
- \r
- \r
+ /**\r
+ * @return\r
+ */\r
+ public static DefinedTerm getGroupCoordinatorType(ITermService termService) {\r
+ if (groupCoordinatorType == null){\r
+ groupCoordinatorType = (DefinedTerm)termService.find(uuidGroupCoordinatorType);\r
+ if (groupCoordinatorType == null){\r
+ groupCoordinatorType = DefinedTerm.NewInstance(TermType.TaxonNodeAgentRelationType, "group coordinator", "group coordinator", "GC");\r
+\r
+ groupCoordinatorType.setUuid(uuidGroupCoordinatorType);\r
+\r
+ termService.save(groupCoordinatorType);\r
+ }\r
+ }\r
+ return groupCoordinatorType;\r
+ }\r
+ \r
+ \r
+ \r
+ /**\r
+ * @return\r
+ */\r
+ public static DefinedTerm getAssociateSpecialistType(ITermService termService) {\r
+ if (associateSpecialistType == null){\r
+ associateSpecialistType = (DefinedTerm)termService.find(uuidAssociateSpecialistType);\r
+ if (associateSpecialistType == null){\r
+ associateSpecialistType = DefinedTerm.NewInstance(TermType.TaxonNodeAgentRelationType, "associate specialist", "associate specialist", "AS");\r
+\r
+ associateSpecialistType.setUuid(uuidAssociateSpecialistType);\r
+\r
+ termService.save(associateSpecialistType);\r
+ }\r
+ }\r
+ return associateSpecialistType;\r
+ }\r
+ public static Language langFK2Language(\r
+ Integer languageFk) {\r
+ \r
+ Language result = languageFK2Language.get(languageFk);\r
+ \r
+ return result;\r
+ }\r
+\r
+\r
+}\r
BGBM BDI Projects / cdmlib-apps.git / commitdiff