app-import/src/main/java/eu/etaxonomy/cdm/app/pesi/FaunaEuropaeaActivator.java

   1 /**
   2 * Copyright (C) 2007 EDIT
   3 * European Distributed Institute of Taxonomy
   4 * http://www.e-taxonomy.eu
   5 *
   6 * The contents of this file are subject to the Mozilla Public License Version 1.1
   7 * See LICENSE.TXT at the top of this package for the full license terms.
   8 */
   9
  10 package eu.etaxonomy.cdm.app.pesi;
  11
  12 import java.util.UUID;
  13
  14 import org.apache.log4j.Logger;
  15
  16 import eu.etaxonomy.cdm.api.application.CdmApplicationController;
  17 import eu.etaxonomy.cdm.app.common.CdmDestinations;
  18 import eu.etaxonomy.cdm.database.DbSchemaValidation;
  19 import eu.etaxonomy.cdm.database.ICdmDataSource;
  20 import eu.etaxonomy.cdm.io.common.IImportConfigurator.CHECK;
  21 import eu.etaxonomy.cdm.io.common.IImportConfigurator.DO_REFERENCES;
  22 import eu.etaxonomy.cdm.io.common.CdmDefaultImport;
  23 import eu.etaxonomy.cdm.io.common.Source;
  24
  25 import eu.etaxonomy.cdm.io.pesi.faunaEuropaea.FaunaEuropaeaImportConfigurator;
  26 import eu.etaxonomy.cdm.model.description.Feature;
  27 import eu.etaxonomy.cdm.model.description.FeatureNode;
  28 import eu.etaxonomy.cdm.model.description.FeatureTree;
  29 import eu.etaxonomy.cdm.model.name.NomenclaturalCode;
  30
  31 /**
  32  * @author a.babadshanjan
  33  * @created 12.05.2009
  34  */
  35 public class FaunaEuropaeaActivator {
  36         private static final Logger logger = Logger.getLogger(FaunaEuropaeaActivator.class);
  37
  38         static final Source faunaEuropaeaSource = FaunaEuropaeaSources.faunaEu_1_3();
  39         static final ICdmDataSource cdmDestination = CdmDestinations.cdm_test_andreasM();
  40
  41         static final int limitSave = 2000;
  42
  43 //      static final CHECK check = CHECK.CHECK_AND_IMPORT;
  44         static final CHECK check = CHECK.IMPORT_WITHOUT_CHECK;
  45         static DbSchemaValidation dbSchemaValidation = DbSchemaValidation.CREATE;
  46 //      static DbSchemaValidation dbSchemaValidation = DbSchemaValidation.UPDATE;
  47 //      static DbSchemaValidation dbSchemaValidation = DbSchemaValidation.VALIDATE;
  48         static final NomenclaturalCode nomenclaturalCode  = NomenclaturalCode.ICZN;
  49
  50 // ****************** ALL *****************************************
  51
  52         // Fauna Europaea to CDM import
  53         static final boolean doAuthors = true;
  54         static final boolean doTaxa = true;
  55         static final boolean doBasionyms = true;
  56         static final boolean doTaxonomicallyIncluded = true;
  57         static final boolean doMisappliedNames = true;
  58         static final boolean doHeterotypicSynonyms = true;
  59         static final DO_REFERENCES doReferences =  DO_REFERENCES.ALL;
  60         static final boolean doDistributions = true;
  61         static final boolean makeFeatureTree = true;
  62     // CDM to CDM import
  63         static final boolean doHeterotypicSynonymsForBasionyms = true;
  64
  65 // ************************ NONE **************************************** //
  66
  67         // Fauna Europaea to CDM import
  68 //      static final boolean doAuthors = false;
  69 //      static final boolean doTaxa = false;
  70 //      static final boolean doBasionyms = false;
  71 //      static final boolean doTaxonomicallyIncluded = false;
  72 //      static final boolean doMisappliedNames = false;
  73 //      static final boolean doHeterotypicSynonyms = false;
  74 //      static final DO_REFERENCES doReferences =  DO_REFERENCES.NONE;
  75 //      static final boolean doDistributions = false;
  76 //      static final boolean makeFeatureTree = false;
  77 //    // CDM to CDM import
  78 //      static final boolean doHeterotypicSynonymsForBasionyms = false;
  79
  80
  81         /**
  82          * @param args
  83          */
  84         public static void main(String[] args) {
  85
  86                 ICdmDataSource destination = cdmDestination;
  87                 System.out.println("Starting import from Fauna Europaea (" + faunaEuropaeaSource.getDatabase() + ") to CDM (" + destination.getDatabase() + ")...");
  88
  89                                 // invoke Fauna Europaea to CDM import
  90
  91                 FaunaEuropaeaImportConfigurator fauEuImportConfigurator =
  92                         FaunaEuropaeaImportConfigurator.NewInstance(faunaEuropaeaSource,  destination);
  93
  94                 fauEuImportConfigurator.setDbSchemaValidation(dbSchemaValidation);
  95                 fauEuImportConfigurator.setNomenclaturalCode(nomenclaturalCode);
  96                 fauEuImportConfigurator.setCheck(check);
  97
  98                 fauEuImportConfigurator.setDoAuthors(doAuthors);
  99                 fauEuImportConfigurator.setDoTaxa(doTaxa);
 100                 fauEuImportConfigurator.setDoReferences(doReferences);
 101                 fauEuImportConfigurator.setDoOccurrence(doDistributions);
 102                 fauEuImportConfigurator.setDoTaxonomicallyIncluded(doTaxonomicallyIncluded);
 103                 fauEuImportConfigurator.setDoBasionyms(doBasionyms);
 104                 fauEuImportConfigurator.setDoMisappliedNames(doMisappliedNames);
 105                 fauEuImportConfigurator.setDoHeterotypicSynonyms(doHeterotypicSynonyms);
 106                 fauEuImportConfigurator.setDoHeterotypicSynonymsForBasionyms(doHeterotypicSynonymsForBasionyms);
 107
 108                 CdmDefaultImport<FaunaEuropaeaImportConfigurator> fauEuImport =
 109                         new CdmDefaultImport<FaunaEuropaeaImportConfigurator>();
 110                 try {
 111                         fauEuImport.invoke(fauEuImportConfigurator);
 112                 } catch (Exception e) {
 113                         System.out.println("ERROR in Fauna Europaea to CDM import");
 114                         e.printStackTrace();
 115                 }
 116
 117                 // invoke CDM to CDM import
 118
 119 //              System.out.println("Starting import from CDM to CDM (" + destination.getDatabase() + ")...");
 120 //
 121 //              CdmImportConfigurator cdmImportConfigurator =
 122 //                      CdmImportConfigurator.NewInstance(destination, destination);
 123 //
 124 //              cdmImportConfigurator.setDbSchemaValidation(DbSchemaValidation.VALIDATE);
 125 //              cdmImportConfigurator.setNomenclaturalCode(nomenclaturalCode);
 126 //              cdmImportConfigurator.setCheck(check);
 127 //
 128 //              cdmImportConfigurator.setDoHeterotypicSynonymsForBasionyms(doHeterotypicSynonymsForBasionyms);
 129 //              cdmImportConfigurator.setDoAuthors(false);
 130 //              cdmImportConfigurator.setDoTaxa(false);
 131 //              cdmImportConfigurator.setDoReferences(DO_REFERENCES.NONE);
 132 //              cdmImportConfigurator.setDoOccurrence(false);
 133 //              cdmImportConfigurator.setLimitSave(limitSave);
 134 //
 135 //              CdmDefaultImport<CdmImportConfigurator> cdmImport =
 136 //                      new CdmDefaultImport<CdmImportConfigurator>();
 137 //              try {
 138 //                      cdmImport.invoke(cdmImportConfigurator);
 139 //              } catch (Exception e) {
 140 //                      System.out.println("ERROR in CDM to CDM import");
 141 //                      e.printStackTrace();
 142 //              }
 143
 144                 //make feature tree
 145
 146                 if (makeFeatureTree == true) {
 147                         FeatureTree featureTree = FeatureTree.NewInstance(UUID.fromString("ff59b9ad-1fb8-4aa4-a8ba-79d62123d0fb"));
 148                         FeatureNode root = featureTree.getRoot();
 149
 150                         CdmApplicationController app = fauEuImport.getCdmAppController();
 151                         Feature citationFeature = (Feature)app.getTermService().find(UUID.fromString("99b2842f-9aa7-42fa-bd5f-7285311e0101"));
 152                         FeatureNode citationNode = FeatureNode.NewInstance(citationFeature);
 153                         root.addChild(citationNode);
 154                         Feature distributionFeature = (Feature)app.getTermService().find(UUID.fromString("9fc9d10c-ba50-49ee-b174-ce83fc3f80c6"));
 155                         FeatureNode distributionNode = FeatureNode.NewInstance(distributionFeature);
 156                         root.addChild(distributionNode);
 157
 158                         app.getFeatureTreeService().saveOrUpdate(featureTree);
 159                 }
 160
 161                 System.out.println("End importing Fauna Europaea data");
 162         }
 163
 164 }