app-import/src/main/java/eu/etaxonomy/cdm/app/wp6/palmae/PalmaeActivator.java

   1 /**
   2 * Copyright (C) 2007 EDIT
   3 * European Distributed Institute of Taxonomy
   4 * http://www.e-taxonomy.eu
   5 *
   6 * The contents of this file are subject to the Mozilla Public License Version 1.1
   7 * See LICENSE.TXT at the top of this package for the full license terms.
   8 */
   9
  10 package eu.etaxonomy.cdm.app.wp6.palmae;
  11
  12 import java.io.File;
  13 import java.net.URI;
  14 import java.net.URISyntaxException;
  15 import java.util.UUID;
  16
  17 import org.apache.log4j.Logger;
  18
  19 import eu.etaxonomy.cdm.api.application.ICdmRepository;
  20 import eu.etaxonomy.cdm.app.common.CdmDestinations;
  21 import eu.etaxonomy.cdm.app.images.ImageImportConfigurator;
  22 import eu.etaxonomy.cdm.app.tcs.TcsSources;
  23 import eu.etaxonomy.cdm.app.wp6.palmae.config.PalmaeProtologueImportConfigurator;
  24 import eu.etaxonomy.cdm.database.DbSchemaValidation;
  25 import eu.etaxonomy.cdm.database.ICdmDataSource;
  26 import eu.etaxonomy.cdm.io.PalmaeImageImport;
  27 import eu.etaxonomy.cdm.io.PalmaeProtologueImport;
  28 import eu.etaxonomy.cdm.io.common.CdmDefaultImport;
  29 import eu.etaxonomy.cdm.io.common.IImportConfigurator;
  30 import eu.etaxonomy.cdm.io.common.IImportConfigurator.CHECK;
  31 import eu.etaxonomy.cdm.io.common.IImportConfigurator.DO_REFERENCES;
  32 import eu.etaxonomy.cdm.io.common.ImportResult;
  33 import eu.etaxonomy.cdm.io.tcsrdf.TcsRdfImportConfigurator;
  34 import eu.etaxonomy.cdm.model.description.Feature;
  35 import eu.etaxonomy.cdm.model.term.TermNode;
  36 import eu.etaxonomy.cdm.model.term.TermTree;
  37
  38 /**
  39  * @author a.mueller
  40  * @since 20.06.2008
  41  */
  42 public class PalmaeActivator {
  43         private static final Logger logger = Logger.getLogger(PalmaeActivator.class);
  44
  45         //database validation status (create, update, validate ...)
  46         static DbSchemaValidation hbm2dll = DbSchemaValidation.CREATE;
  47         static final String tcsSource = TcsSources.arecaceae_local();
  48         static final ICdmDataSource cdmDestination = CdmDestinations.localH2Palmae();
  49
  50         // set the webserver path to the images
  51         private static final String imageUrlString = "http://wp5.e-taxonomy.eu/media/palmae/photos/";
  52         // set the webserver path to the protologues
  53         public static final String protologueUrlString = "http://wp5.e-taxonomy.eu/media/palmae/protologe/";
  54
  55         public static final UUID featureTreeUuid = UUID.fromString("72ccce05-7cc8-4dab-8e47-bf3f5fd848a0");
  56
  57         static final UUID treeUuid = UUID.fromString("1adb71d4-cce6-45e1-b578-e668778d9ec6");
  58         static final UUID secUuid = UUID.fromString("5f32b8af-0c97-48ac-8d33-6099ed68c625");
  59         static final String sourceSecId = "palm_pub_ed_999999";
  60         static final boolean pubishReferencesInBibliography = false;
  61
  62         //should the other imports run as well?
  63         static final boolean includeTaxonX = true;
  64         static final boolean includeImages = true;
  65         static final boolean includeExcelProtologue = true;
  66         static final boolean includeMediaProtologue = true;
  67         static final boolean updateFeatureTree = true;
  68         static final boolean updateNameUsage = true;
  69
  70         //check - import
  71         static final CHECK check = CHECK.CHECK_AND_IMPORT;
  72
  73         static boolean useClassification = true;
  74
  75         //authors
  76         static final boolean doAuthors = true;
  77         //references
  78         static final DO_REFERENCES doReferences =  DO_REFERENCES.ALL;
  79         //names
  80         static final boolean doTaxonNames = true;
  81         static final boolean doRelNames = true;
  82
  83         //taxa
  84         static final boolean doTaxa = true;
  85         static final boolean doRelTaxa = true;
  86         static final boolean doFacts = true;
  87
  88
  89         private ImportResult doImport(ICdmDataSource destination){
  90                 ImportResult success;
  91                 System.out.println("Start import from Tcs("+ tcsSource.toString() + ") ...");
  92
  93                 //make Source
  94                 URI source;
  95                 try {
  96                         source = new URI(tcsSource);
  97
  98                         TcsRdfImportConfigurator tcsImportConfigurator = TcsRdfImportConfigurator.NewInstance(source,  destination);
  99
 100                         tcsImportConfigurator.setClassificationUuid(treeUuid);
 101                         tcsImportConfigurator.setSecUuid(secUuid);
 102                         tcsImportConfigurator.setSourceSecId(sourceSecId);
 103
 104                         tcsImportConfigurator.setDoReferences(doReferences);
 105                         tcsImportConfigurator.setDoTaxonNames(doTaxonNames);
 106                         tcsImportConfigurator.setDoRelNames(doRelNames);
 107
 108                         tcsImportConfigurator.setDoTaxa(doTaxa);
 109                         tcsImportConfigurator.setDoRelTaxa(doRelTaxa);
 110                         tcsImportConfigurator.setDoFacts(doFacts);
 111                         tcsImportConfigurator.setUseClassification(useClassification);
 112                         tcsImportConfigurator.setPublishReferences(pubishReferencesInBibliography);
 113
 114                         tcsImportConfigurator.setCheck(check);
 115                         tcsImportConfigurator.setDbSchemaValidation(hbm2dll);
 116
 117                         // invoke import
 118                         CdmDefaultImport<TcsRdfImportConfigurator> tcsImport = new CdmDefaultImport<TcsRdfImportConfigurator>();
 119                         success = tcsImport.invoke(tcsImportConfigurator);
 120
 121                         //make feature tree
 122                         logger.info("Make feature tree");
 123                         ICdmRepository app = tcsImport.getCdmAppController();
 124
 125                         TermTree<Feature> tree = getFeatureTree();
 126                         app.getFeatureTreeService().saveOrUpdate(tree);
 127                         System.out.println("End import from TCS ("+ source.toString() + ")...");
 128
 129                         return success;
 130                 } catch (URISyntaxException e) {
 131                         e.printStackTrace();
 132                         success = new ImportResult();
 133                         success.addException(e);
 134                         return success;
 135                 }
 136         }
 137
 138
 139         private TermTree<Feature> getFeatureTree(){
 140
 141             TermTree<Feature> result = TermTree.NewFeatureInstance(featureTreeUuid);
 142                 TermNode<Feature> root = result.getRoot();
 143
 144                 root.addChild(Feature.INTRODUCTION());
 145                 root.addChild(Feature.DISTRIBUTION());
 146                 root.addChild(Feature.BIOLOGY_ECOLOGY());
 147                 root.addChild(Feature.CONSERVATION());
 148                 root.addChild(Feature.COMMON_NAME());
 149                 root.addChild(Feature.ETYMOLOGY());
 150                 root.addChild(Feature.USES());
 151                 root.addChild(Feature.CULTIVATION());
 152                 root.addChild(Feature.DISCUSSION());
 153                 root.addChild(Feature.DIAGNOSIS());
 154                 root.addChild(Feature.DESCRIPTION());
 155                 root.addChild(Feature.MATERIALS_EXAMINED());
 156                 root.addChild(Feature.ANATOMY());
 157
 158                 return result;
 159
 160
 161         }
 162
 163         /**
 164          * @param args
 165          */
 166         public static void main(String[] args) {
 167                 ImportResult success;
 168
 169                 logger.debug("start");
 170                 ICdmDataSource destination = CdmDestinations.chooseDestination(args) != null ? CdmDestinations.chooseDestination(args) : cdmDestination;
 171
 172                 PalmaeActivator me = new PalmaeActivator();
 173                 me.doImport(destination);
 174
 175                 if (includeImages){
 176                         System.out.println("Start importing images ...");
 177                         CdmDefaultImport<IImportConfigurator> imageImporter = new CdmDefaultImport<IImportConfigurator>();
 178                         URI folderUri;
 179                         try {
 180                                 folderUri = new URI(PalmaeImageActivator.sourceFolderString);
 181                                 ImageImportConfigurator imageConfigurator = ImageImportConfigurator.NewInstance(
 182                                                 folderUri, destination, imageUrlString, PalmaeImageImport.class);
 183                                 imageConfigurator.setSecUuid(secUuid);
 184                                 success = imageImporter.invoke(imageConfigurator);
 185                                 System.out.println("End importing images ...");
 186                         } catch (URISyntaxException e) {
 187                                 e.printStackTrace();
 188                         }
 189                 }
 190
 191                 if (includeExcelProtologue){
 192                         System.out.println("Start importing protologues ...");
 193                         URI fileUri;
 194                         try {
 195                                 fileUri = new URI(PalmaeExcelProtologueActivator.sourceFileString);
 196                                 ImageImportConfigurator imageConfigurator = ImageImportConfigurator.NewInstance(
 197                                                 fileUri, destination, protologueUrlString, PalmaeProtologueImport.class);
 198                                 imageConfigurator.setSecUuid(secUuid);
 199
 200                                 CdmDefaultImport<IImportConfigurator> imageImporter = new CdmDefaultImport<IImportConfigurator>();
 201                                 imageImporter.invoke(imageConfigurator);
 202                                 System.out.println("End importing protologues ...");
 203                         } catch (URISyntaxException e) {
 204                                 e.printStackTrace();
 205                         }
 206
 207                 }
 208                 if (includeMediaProtologue){
 209                         System.out.println("Start importing protologues from \\\\media...");
 210                         String protologueSource = PalmaeProtologueImportActivator.protologueSource;
 211                         String urlString = protologueUrlString;
 212
 213                         File source = new File (protologueSource);
 214                         PalmaeProtologueImportConfigurator protologConfig = PalmaeProtologueImportConfigurator.NewInstance(source, destination, urlString);
 215                         CdmDefaultImport<IImportConfigurator> cdmImport = new CdmDefaultImport<IImportConfigurator>();
 216
 217                         //protologConfig.setDoFacts(doDescriptions);
 218                         protologConfig.setCheck(check);
 219                         protologConfig.setDbSchemaValidation(DbSchemaValidation.UPDATE);
 220
 221                         success = cdmImport.invoke(protologConfig);
 222
 223                         System.out.println("End importing protologues ...");
 224                 }
 225
 226                 if (includeTaxonX){
 227                         System.out.println("Start importing taxonX ...");
 228                         PalmaeTaxonXImportActivator taxonXimporter = new PalmaeTaxonXImportActivator();
 229                         PalmaeTaxonXImportActivator.cdmDestination = destination;
 230                         success = taxonXimporter.runImport();
 231                         System.out.println("End importing taxonX ...");
 232                 }
 233
 234                 PalmaePostImportUpdater updater = new PalmaePostImportUpdater();
 235                 if (updateFeatureTree){
 236                         updater.updateMissingFeatures(destination);
 237                 }
 238
 239                 if (updateNameUsage){
 240                         updater.updateNameUsage(destination);
 241                 }
 242
 243
 244                 String strSuccess = "";
 245                 if (success.isSuccess() == false){
 246                         strSuccess = "not ";
 247                 }
 248                 System.out.println("Import " + strSuccess + "successful");
 249
 250         }
 251
 252 }