app-import/src/main/java/eu/etaxonomy/cdm/app/pesi/EuroMedActivator.java

   1 /**
   2 * Copyright (C) 2007 EDIT
   3 * European Distributed Institute of Taxonomy
   4 * http://www.e-taxonomy.eu
   5 *
   6 * The contents of this file are subject to the Mozilla Public License Version 1.1
   7 * See LICENSE.TXT at the top of this package for the full license terms.
   8 */
   9
  10 package eu.etaxonomy.cdm.app.pesi;
  11
  12 import java.util.UUID;
  13
  14 import org.apache.log4j.Logger;
  15
  16 import eu.etaxonomy.cdm.api.application.ICdmApplicationConfiguration;
  17 import eu.etaxonomy.cdm.app.berlinModelImport.BerlinModelSources;
  18 import eu.etaxonomy.cdm.app.berlinModelImport.TreeCreator;
  19 import eu.etaxonomy.cdm.app.common.CdmDestinations;
  20 import eu.etaxonomy.cdm.database.DbSchemaValidation;
  21 import eu.etaxonomy.cdm.database.ICdmDataSource;
  22 import eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelImportConfigurator;
  23 import eu.etaxonomy.cdm.io.common.CdmDefaultImport;
  24 import eu.etaxonomy.cdm.io.common.IImportConfigurator.CHECK;
  25 import eu.etaxonomy.cdm.io.common.IImportConfigurator.DO_REFERENCES;
  26 import eu.etaxonomy.cdm.io.common.IImportConfigurator.EDITOR;
  27 import eu.etaxonomy.cdm.io.common.Source;
  28 import eu.etaxonomy.cdm.model.description.Feature;
  29 import eu.etaxonomy.cdm.model.description.FeatureNode;
  30 import eu.etaxonomy.cdm.model.description.FeatureTree;
  31 import eu.etaxonomy.cdm.model.name.NomenclaturalCode;
  32
  33
  34 /**
  35  * TODO add the following to a wiki page:
  36  * HINT: If you are about to import into a mysql data base running under windows and if you wish to dump and restore the resulting data bas under another operation systen
  37  * you must set the mysql system variable lower_case_table_names = 0 in order to create data base with table compatible names.
  38  *
  39  *
  40  * @author a.mueller
  41  *
  42  */
  43 public class EuroMedActivator {
  44         @SuppressWarnings("unused")
  45         private static final Logger logger = Logger.getLogger(EuroMedActivator.class);
  46
  47         //database validation status (create, update, validate ...)
  48         static DbSchemaValidation hbm2dll = DbSchemaValidation.CREATE;
  49 //      static final Source berlinModelSource = BerlinModelSources.euroMed();
  50         static final Source berlinModelSource = BerlinModelSources.EDIT_CICHORIEAE();
  51 //      static final Source berlinModelSource = BerlinModelSources.EDIT_Diptera();
  52
  53         static final ICdmDataSource cdmDestination = CdmDestinations.cdm_test_andreasM();
  54         static final int sourceSecId = 7000000; //500000
  55
  56         static final UUID classificationUuid = UUID.fromString("314a68f9-8449-495a-91c2-92fde8bcf344");
  57
  58         static final UUID featureTreeUuid = UUID.fromString("6a5e1c2b-ec0d-46c8-9c7d-a2059267ffb7");
  59         static final Object[] featureKeyList = new Integer[]{1, 31, 4, 98, 41};
  60
  61         // set to zero for unlimited nameFacts
  62         static final int maximumNumberOfNameFacts = 0;
  63
  64         static final int partitionSize = 2000;
  65
  66         //check - import
  67         static final CHECK check = CHECK.CHECK_AND_IMPORT;
  68
  69         //editor - import
  70         static final EDITOR editor = EDITOR.EDITOR_AS_EDITOR;
  71
  72         //NomeclaturalCode
  73         static final NomenclaturalCode nomenclaturalCode = NomenclaturalCode.ICBN;
  74
  75         //ignore null
  76         static final boolean ignoreNull = true;
  77
  78         static boolean useClassification = true;
  79
  80
  81 // **************** ALL *********************
  82 //
  83         static final boolean doUser = true;
  84         //authors
  85         static final boolean doAuthors = true;
  86         //references
  87         static final DO_REFERENCES doReferences =  DO_REFERENCES.ALL;
  88         //names
  89         static final boolean doTaxonNames = true;
  90         static final boolean doRelNames = true;
  91         static final boolean doNameStatus = true;
  92         static final boolean doTypes = true;
  93         static final boolean doNameFacts = true;
  94
  95         //taxa
  96         static final boolean doTaxa = true;
  97         static final boolean doRelTaxa = true;
  98         static final boolean doFacts = true;
  99         static final boolean doOccurences = true;
 100         static final boolean doCommonNames = true;
 101
 102         //etc.
 103         static final boolean doMarker = true;
 104
 105
 106 // **************** SELECTED *********************
 107
 108 //      static final boolean doUser = true;
 109 //      //authors
 110 //      static final boolean doAuthors = false;
 111 //      //references
 112 //      static final DO_REFERENCES doReferences =  DO_REFERENCES.NONE;
 113 //      //names
 114 //      static final boolean doTaxonNames = false;
 115 //      static final boolean doRelNames = false;
 116 //      static final boolean doNameStatus = false;
 117 //      static final boolean doTypes = false;
 118 //      static final boolean doNameFacts = false;
 119 //
 120 //      //taxa
 121 //      static final boolean doTaxa = false;
 122 //      static final boolean doRelTaxa = false;
 123 //      static final boolean doFacts = false;
 124 //      static final boolean doOccurences = false;
 125 //
 126 //      //etc.
 127 //      static final boolean doMarker = false;
 128
 129
 130         /**
 131          * @param args
 132          */
 133         public static void main(String[] args) {
 134                 System.out.println("Start import from BerlinModel("+ berlinModelSource.getDatabase() + ") to " + cdmDestination.getDatabase() + " ...");
 135
 136                 //make BerlinModel Source
 137                 Source source = berlinModelSource;
 138                 ICdmDataSource destination = CdmDestinations.chooseDestination(args) != null ? CdmDestinations.chooseDestination(args) : cdmDestination;
 139
 140                 BerlinModelImportConfigurator bmImportConfigurator = BerlinModelImportConfigurator.NewInstance(source,  destination);
 141
 142                 bmImportConfigurator.setClassificationUuid(classificationUuid);
 143                 bmImportConfigurator.setSourceSecId(sourceSecId);
 144
 145                 bmImportConfigurator.setNomenclaturalCode(nomenclaturalCode);
 146
 147                 bmImportConfigurator.setIgnoreNull(ignoreNull);
 148                 bmImportConfigurator.setDoAuthors(doAuthors);
 149                 bmImportConfigurator.setDoReferences(doReferences);
 150                 bmImportConfigurator.setDoTaxonNames(doTaxonNames);
 151                 bmImportConfigurator.setDoRelNames(doRelNames);
 152                 bmImportConfigurator.setDoNameStatus(doNameStatus);
 153                 bmImportConfigurator.setDoTypes(doTypes);
 154                 bmImportConfigurator.setDoNameFacts(doNameFacts);
 155                 bmImportConfigurator.setUseClassification(useClassification);
 156
 157                 bmImportConfigurator.setDoTaxa(doTaxa);
 158                 bmImportConfigurator.setDoRelTaxa(doRelTaxa);
 159                 bmImportConfigurator.setDoFacts(doFacts);
 160                 bmImportConfigurator.setDoOccurrence(doOccurences);
 161                 bmImportConfigurator.setDoCommonNames(doCommonNames);
 162
 163                 bmImportConfigurator.setDoMarker(doMarker);
 164                 bmImportConfigurator.setDoUser(doUser);
 165                 bmImportConfigurator.setEditor(editor);
 166                 bmImportConfigurator.setDbSchemaValidation(hbm2dll);
 167
 168                 // maximum number of name facts to import
 169                 bmImportConfigurator.setMaximumNumberOfNameFacts(maximumNumberOfNameFacts);
 170
 171                 bmImportConfigurator.setCheck(check);
 172                 bmImportConfigurator.setEditor(editor);
 173                 bmImportConfigurator.setRecordsPerTransaction(partitionSize);
 174
 175                 // invoke import
 176                 CdmDefaultImport<BerlinModelImportConfigurator> bmImport = new CdmDefaultImport<BerlinModelImportConfigurator>();
 177                 bmImport.invoke(bmImportConfigurator);
 178
 179                 if (doFacts && bmImportConfigurator.getCheck().equals(CHECK.CHECK_AND_IMPORT)  || bmImportConfigurator.getCheck().equals(CHECK.IMPORT_WITHOUT_CHECK)    ){
 180                         ICdmApplicationConfiguration app = bmImport.getCdmAppController();
 181
 182                         //make feature tree
 183                         FeatureTree tree = TreeCreator.flatTree(featureTreeUuid, bmImportConfigurator.getFeatureMap(), featureKeyList);
 184                         FeatureNode imageNode = FeatureNode.NewInstance(Feature.IMAGE());
 185                         tree.getRoot().addChild(imageNode);
 186                         FeatureNode distributionNode = FeatureNode.NewInstance(Feature.DISTRIBUTION());
 187                         tree.getRoot().addChild(distributionNode, 2);
 188                         app.getFeatureTreeService().saveOrUpdate(tree);
 189                 }
 190
 191                 System.out.println("End import from BerlinModel ("+ source.getDatabase() + ")...");
 192
 193         }
 194
 195 }