cdm-pesi/src/main/java/eu/etaxonomy/cdm/io/pesi/erms/ErmsNotesImport.java

   1 /**
   2 * Copyright (C) 2007 EDIT
   3 * European Distributed Institute of Taxonomy
   4 * http://www.e-taxonomy.eu
   5 *
   6 * The contents of this file are subject to the Mozilla Public License Version 1.1
   7 * See LICENSE.TXT at the top of this package for the full license terms.
   8 */
   9
  10 package eu.etaxonomy.cdm.io.pesi.erms;
  11
  12 import java.sql.ResultSet;
  13 import java.sql.SQLException;
  14 import java.util.HashMap;
  15 import java.util.HashSet;
  16 import java.util.Map;
  17 import java.util.Set;
  18
  19 import org.apache.log4j.Logger;
  20 import org.springframework.stereotype.Component;
  21
  22 import eu.etaxonomy.cdm.io.common.IOValidator;
  23 import eu.etaxonomy.cdm.io.common.mapping.DbImportAnnotationMapper;
  24 import eu.etaxonomy.cdm.io.common.mapping.DbImportFeatureCreationMapper;
  25 import eu.etaxonomy.cdm.io.common.mapping.DbImportMapping;
  26 import eu.etaxonomy.cdm.io.common.mapping.DbImportMultiLanguageTextMapper;
  27 import eu.etaxonomy.cdm.io.common.mapping.DbImportTextDataCreationMapper;
  28 import eu.etaxonomy.cdm.io.common.mapping.out.DbLastActionMapper;
  29 import eu.etaxonomy.cdm.io.pesi.erms.validation.ErmsNoteImportValidator;
  30 import eu.etaxonomy.cdm.model.common.Annotation;
  31 import eu.etaxonomy.cdm.model.common.AnnotationType;
  32 import eu.etaxonomy.cdm.model.common.CdmBase;
  33 import eu.etaxonomy.cdm.model.common.Language;
  34 import eu.etaxonomy.cdm.model.common.MarkerType;
  35 import eu.etaxonomy.cdm.model.description.TextData;
  36 import eu.etaxonomy.cdm.model.taxon.TaxonBase;
  37
  38 /**
  39  * @author a.mueller
  40  * @since 20.02.2010
  41  */
  42 @Component
  43 public class ErmsNotesImport  extends ErmsImportBase<Annotation> {
  44
  45     private static final long serialVersionUID = 3597110192009910328L;
  46
  47     @SuppressWarnings("unused")
  48         private static final Logger logger = Logger.getLogger(ErmsNotesImport.class);
  49
  50         private DbImportMapping<ErmsImportState, ErmsImportConfigurator> mapping;
  51
  52         private static final String pluralString = "notes";
  53         private static final String dbTableName = "notes";
  54         private static final Class<?> cdmTargetClass = TextData.class;
  55
  56         public ErmsNotesImport(){
  57                 super(pluralString, dbTableName, cdmTargetClass);
  58         }
  59
  60         @Override
  61         protected String getRecordQuery(ErmsImportConfigurator config) {
  62                 String strRecordQuery =
  63                         " SELECT n.*, " +
  64                       " s.sessiondate lastActionDate, a.action_name lastAction, s.ExpertName " +
  65                         " FROM notes n " +
  66             "     LEFT OUTER JOIN notes_sessions MN ON MN.note_id = n.id " +
  67             "     LEFT OUTER JOIN [sessions] s ON s.id = MN.session_id " +
  68             "     LEFT OUTER JOIN actions a ON a.id = MN.action_id " +
  69                         " WHERE ( n.id IN (" + ID_LIST_TOKEN + ") )" +
  70                         " ORDER BY n.id, s.sessiondate DESC, a.id DESC ";
  71                 return strRecordQuery;
  72         }
  73
  74     Integer lastNoteId = null;
  75     @Override
  76     protected boolean ignoreRecord(ResultSet rs) throws SQLException {
  77         Integer id = rs.getInt("id");
  78         boolean result = id.equals(lastNoteId);
  79         lastNoteId = id;
  80         return result;
  81     }
  82
  83         @Override
  84     protected DbImportMapping<ErmsImportState, ErmsImportConfigurator> getMapping() {
  85                 if (mapping == null){
  86                         mapping = new DbImportMapping<>();
  87                         mapping.addMapper(DbImportTextDataCreationMapper.NewInstance("id", NOTES_NAMESPACE, "tu_id", TAXON_NAMESPACE));
  88                         mapping.addMapper(DbImportFeatureCreationMapper.NewInstance("type", FEATURE_NAMESPACE, "type", "type", "type"));
  89                         mapping.addMapper(DbImportMultiLanguageTextMapper.NewInstance("note", "lan_id", LANGUAGE_NAMESPACE, "Text", true));
  90                         Language notesNoteLanguage = null;
  91                         mapping.addMapper(DbImportAnnotationMapper.NewInstance("note", AnnotationType.EDITORIAL(), notesNoteLanguage));
  92             //last action
  93                         AnnotationType speciesExpertNameAnnType = getAnnotationType(ErmsTransformer.uuidAnnSpeciesExpertName, "species expert name", "species expert name", "species expert name");
  94             mapping.addMapper(DbImportAnnotationMapper.NewInstance("ExpertName", speciesExpertNameAnnType)); //according to sql script ExpertName maps to SpeciesExpertName in ERMS
  95             AnnotationType lastActionDateType = getAnnotationType(DbLastActionMapper.uuidAnnotationTypeLastActionDate, "Last action date", "Last action date", null);
  96             mapping.addMapper(DbImportAnnotationMapper.NewInstance("lastActionDate", lastActionDateType));
  97             AnnotationType lastActionType = getAnnotationType(DbLastActionMapper.uuidAnnotationTypeLastAction, "Last action", "Last action", null);
  98             MarkerType hasNoLastActionMarkerType = getMarkerType(DbLastActionMapper.uuidMarkerTypeHasNoLastAction, "has no last action", "No last action information available", "no last action");
  99             mapping.addMapper(DbImportAnnotationMapper.NewInstance("lastAction", lastActionType, hasNoLastActionMarkerType));
 100                 }
 101                 return mapping;
 102         }
 103
 104         @Override
 105         public Map<Object, Map<String, ? extends CdmBase>> getRelatedObjectsForPartition(ResultSet rs, ErmsImportState state) {
 106
 107             String nameSpace;
 108                 Set<String> idSet;
 109                 Map<Object, Map<String, ? extends CdmBase>> result = new HashMap<>();
 110
 111                 try{
 112                         Set<String> taxonIdSet = new HashSet<>();
 113                         Set<String> languageIdSet = new HashSet<>();
 114                         while (rs.next()){
 115                                 handleForeignKey(rs, taxonIdSet, "tu_id");
 116                                 handleForeignKey(rs, languageIdSet, "lan_id");
 117                         }
 118
 119                         //taxon map
 120                         nameSpace = ErmsImportBase.TAXON_NAMESPACE;
 121                         idSet = taxonIdSet;
 122                         @SuppressWarnings("rawtypes")
 123             Map<String, TaxonBase> taxonMap = getCommonService().getSourcedObjectsByIdInSourceC(TaxonBase.class, idSet, nameSpace);
 124                         result.put(nameSpace, taxonMap);
 125
 126                         //language map
 127                         nameSpace = LANGUAGE_NAMESPACE;
 128                         Map<String, Language> languageMap = new HashMap<>();
 129                         ErmsTransformer transformer = new ErmsTransformer();
 130                         for (String lanAbbrev: languageIdSet){
 131                                 Language language = transformer.getLanguageByKey(lanAbbrev);
 132                                 languageMap.put(lanAbbrev, language);
 133                         }
 134                         result.put(nameSpace, languageMap);
 135
 136                 } catch (SQLException e) {
 137                         throw new RuntimeException(e);
 138                 }
 139                 return result;
 140         }
 141
 142         @Override
 143         protected boolean doCheck(ErmsImportState state){
 144                 IOValidator<ErmsImportState> validator = new ErmsNoteImportValidator();
 145                 return validator.validate(state);
 146         }
 147
 148         @Override
 149         protected boolean isIgnore(ErmsImportState state){
 150                 return ! state.getConfig().isDoNotes();
 151         }
 152 }