app-import/src/main/java/eu/etaxonomy/cdm/io/redlist/bfnXml/out/BfnXmlTaxonNameExport.java

   1 /**
   2 * Copyright (C) 2007 EDIT
   3 * European Distributed Institute of Taxonomy
   4 * http://www.e-taxonomy.eu
   5 *
   6 * The contents of this file are subject to the Mozilla Public License Version 1.1
   7 * See LICENSE.TXT at the top of this package for the full license terms.
   8 */
   9 package eu.etaxonomy.cdm.io.redlist.bfnXml.out;
  10
  11 import java.io.FileWriter;
  12 import java.io.IOException;
  13 import java.util.List;
  14 import java.util.Set;
  15
  16 import org.apache.log4j.Logger;
  17 import org.jdom2.Attribute;
  18 import org.jdom2.Document;
  19 import org.jdom2.Element;
  20 import org.jdom2.output.Format;
  21 import org.jdom2.output.XMLOutputter;
  22 import org.springframework.stereotype.Component;
  23
  24 import eu.etaxonomy.cdm.hibernate.HibernateProxyHelper;
  25 import eu.etaxonomy.cdm.io.redlist.bfnXml.BfnXmlConstants;
  26 import eu.etaxonomy.cdm.io.redlist.bfnXml.in.BfnXmlTransformer;
  27 import eu.etaxonomy.cdm.model.common.IdentifiableSource;
  28 import eu.etaxonomy.cdm.model.common.OriginalSourceType;
  29 import eu.etaxonomy.cdm.model.name.NonViralName;
  30 import eu.etaxonomy.cdm.model.name.Rank;
  31 import eu.etaxonomy.cdm.model.name.TaxonNameBase;
  32 import eu.etaxonomy.cdm.model.taxon.Classification;
  33 import eu.etaxonomy.cdm.model.taxon.Taxon;
  34 import eu.etaxonomy.cdm.model.taxon.TaxonNode;
  35
  36
  37
  38 /**
  39  *
  40  * @author pplitzner
  41  * @date May 3, 2016
  42  *
  43  */
  44 @Component
  45 public class BfnXmlTaxonNameExport extends BfnXmlExportBase<TaxonNameBase> {
  46
  47     private static final long serialVersionUID = -931703660108981011L;
  48
  49     private static final Logger logger = Logger.getLogger(BfnXmlTaxonNameExport.class);
  50
  51         public BfnXmlTaxonNameExport(){
  52                 super();
  53         }
  54
  55         @Override
  56     protected void doInvoke(BfnXmlExportState state){
  57             Document document = state.getConfig().getDocument();
  58
  59             startTransaction(true);
  60
  61             //get all classifications
  62             List<Classification> classifications = getClassificationService().list(Classification.class, null, null, null, null);
  63             for (Classification classification : classifications) {
  64             Element roteListeDaten = new Element(BfnXmlConstants.EL_ROTELISTEDATEN);
  65             roteListeDaten.setAttribute(new Attribute(BfnXmlConstants.ATT_INHALT, classification.getTitleCache()));
  66             document.getRootElement().addContent(roteListeDaten);
  67
  68             //export taxonomy
  69             Element taxonyme = new Element(BfnXmlConstants.EL_TAXONYME);
  70             roteListeDaten.addContent(taxonyme);
  71             List<TaxonNode> childNodes = classification.getChildNodes();
  72             for (TaxonNode taxonNode : childNodes) {
  73                 exportTaxon(taxonNode, taxonyme);
  74             }
  75         }
  76
  77             XMLOutputter outputter = new XMLOutputter();
  78             outputter.setFormat(Format.getPrettyFormat());
  79             try {
  80             outputter.output(document, new FileWriter(state.getConfig().getDestination()));
  81         } catch (IOException e) {
  82             logger.error("Error writing file", e);
  83         }
  84
  85         }
  86
  87     private void exportTaxon(TaxonNode taxonNode, Element parent) {
  88         Element taxonym = new Element(BfnXmlConstants.EL_TAXONYM);
  89         parent.addContent(taxonym);
  90
  91         Taxon taxon = taxonNode.getTaxon();
  92         NonViralName name = HibernateProxyHelper.deproxy(taxon.getName(), NonViralName.class);
  93         Rank rank = name.getRank();
  94         //wissName
  95         addNanteil(taxonym, BfnXmlConstants.BEREICH_WISSNAME, taxon.getTitleCache());
  96         //epitithon 1,2,3
  97         addNanteil(taxonym, BfnXmlConstants.BEREICH_EPITHETON1, name.getGenusOrUninomial());
  98         if(rank.isLower(Rank.GENUS())){
  99             String epitheton2 = name.getInfraGenericEpithet();
 100             if(epitheton2==null){
 101                 epitheton2 = name.getSpecificEpithet();
 102             }
 103             addNanteil(taxonym, BfnXmlConstants.BEREICH_EPITHETON2, epitheton2);
 104         }
 105         if(rank.isLower(Rank.SPECIES())){
 106             String epitheton3 = name.getInfraSpecificEpithet();
 107             if(epitheton3==null){
 108                 epitheton3 = name.getSpecificEpithet();
 109             }
 110             addNanteil(taxonym, BfnXmlConstants.BEREICH_EPITHETON3, epitheton3);
 111         }
 112         Set<IdentifiableSource> sources = taxon.getSources();
 113         for (IdentifiableSource identifiableSource : sources) {
 114             if(identifiableSource.getType().equals(OriginalSourceType.Import)
 115                     && identifiableSource.getIdNamespace().equals(BfnXmlConstants.EL_TAXONYM+":"
 116             +BfnXmlConstants.EL_WISSNAME+":"+BfnXmlConstants.EL_NANTEIL+":"+BfnXmlConstants.BEREICH_EINDEUTIGER_CODE)){
 117                 addNanteil(taxonym, BfnXmlConstants.BEREICH_EINDEUTIGER_CODE, identifiableSource.getIdInSource());
 118             }
 119         }
 120         //rank
 121         addNanteil(taxonym, BfnXmlConstants.BEREICH_RANG, BfnXmlTransformer.getRankmap().get(rank));
 122
 123     }
 124
 125     private void addNanteil(Element element, String bereich, String textContent) {
 126         Element nanteil = new Element(BfnXmlConstants.EL_NANTEIL);
 127         nanteil.setAttribute(new Attribute(BfnXmlConstants.ATT_BEREICH, bereich));
 128         nanteil.addContent(textContent);
 129         element.addContent(nanteil);
 130     }
 131
 132     @Override
 133     protected boolean doCheck(BfnXmlExportState state) {
 134         return false;
 135     }
 136
 137     @Override
 138     protected boolean isIgnore(BfnXmlExportState state) {
 139         return false;
 140     }
 141
 142 }