app-import/src/main/java/eu/etaxonomy/cdm/app/berlinModelImport/MTMooseActivator.java

   1 /**
   2 * Copyright (C) 2007 EDIT
   3 * European Distributed Institute of Taxonomy
   4 * http://www.e-taxonomy.eu
   5 *
   6 * The contents of this file are subject to the Mozilla Public License Version 1.1
   7 * See LICENSE.TXT at the top of this package for the full license terms.
   8 */
   9
  10 package eu.etaxonomy.cdm.app.berlinModelImport;
  11
  12 import java.util.UUID;
  13
  14 import org.apache.log4j.Logger;
  15
  16 import eu.etaxonomy.cdm.api.application.ICdmApplicationConfiguration;
  17 import eu.etaxonomy.cdm.app.common.CdmDestinations;
  18 import eu.etaxonomy.cdm.database.DbSchemaValidation;
  19 import eu.etaxonomy.cdm.database.ICdmDataSource;
  20 import eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelImportConfigurator;
  21 import eu.etaxonomy.cdm.io.common.CdmDefaultImport;
  22 import eu.etaxonomy.cdm.io.common.IImportConfigurator.CHECK;
  23 import eu.etaxonomy.cdm.io.common.IImportConfigurator.DO_REFERENCES;
  24 import eu.etaxonomy.cdm.io.common.Source;
  25 import eu.etaxonomy.cdm.model.description.Feature;
  26 import eu.etaxonomy.cdm.model.description.FeatureNode;
  27 import eu.etaxonomy.cdm.model.description.FeatureTree;
  28 import eu.etaxonomy.cdm.model.name.NomenclaturalCode;
  29
  30
  31 /**
  32  * TODO add the following to a wiki page:
  33  * HINT: If you are about to import into a mysql data base running under windows and if you wish to dump and restore the resulting data bas under another operation systen
  34  * you must set the mysql system variable lower_case_table_names = 0 in order to create data base with table compatible names.
  35  *
  36  *
  37  * @author a.mueller
  38  *
  39  */
  40 public class MTMooseActivator {
  41         private static final Logger logger = Logger.getLogger(AlgaTerraActivator.class);
  42
  43         //database validation status (create, update, validate ...)
  44         static DbSchemaValidation hbm2dll = DbSchemaValidation.CREATE;
  45         static final Source berlinModelSource = BerlinModelSources.MT_MOOSE();
  46         static final ICdmDataSource cdmDestination = CdmDestinations.localH2();
  47 //      static final ICdmDataSource cdmDestination = CdmDestinations.cdm_mt_moose();
  48 //      static final ICdmDataSource cdmDestination = CdmDestinations.cdm_test_local_mysql_moose();
  49
  50
  51         static final UUID classificationUuid = UUID.fromString("601d8a00-cffe-4509-af93-b15b543ccf8d");
  52         static final UUID sourceRefUuid = UUID.fromString("601d8a00-cffe-4509-af93-b15b543ccf8d");
  53
  54         static final UUID featureTreeUuid = UUID.fromString("4c5b5bbe-6fef-4607-96b2-1b0104eac19e");
  55         static final Object[] featureKeyList = new Integer[]{7,201,202,203,204,205,206,207};
  56
  57         //check - import
  58         static final CHECK check = CHECK.CHECK_AND_IMPORT;
  59
  60
  61         //NomeclaturalCode
  62         static final NomenclaturalCode nomenclaturalCode = NomenclaturalCode.ICNAFP;
  63
  64 // ****************** ALL *****************************************
  65
  66         //authors
  67         static final boolean doAuthors = true;
  68         //references
  69         static final DO_REFERENCES doReferences =  DO_REFERENCES.ALL;
  70         //names
  71         static final boolean doTaxonNames = true;
  72         static final boolean doRelNames = true;
  73         static final boolean doNameStatus = true;
  74         static final boolean doTypes = true;
  75         static final boolean doNameFacts = false;   //no name facts exist
  76
  77         //taxa
  78         static final boolean doTaxa = true;
  79         static final boolean doRelTaxa = true;
  80         static final boolean doFacts = false;    //no facts exist
  81         static final boolean doOccurences = false;   //no occurrences exist
  82         static final boolean doCommonNames = false;  //nocommon names exist
  83
  84 // ************************ NONE **************************************** //
  85
  86 //      //authors
  87 //      static final boolean doAuthors = false;
  88 //      //references
  89 //      static final DO_REFERENCES doReferences =  DO_REFERENCES.NONE;
  90 //      //names
  91 //      static final boolean doTaxonNames = false;
  92 //      static final boolean doRelNames = false;
  93 //      static final boolean doNameStatus = false;
  94 //      static final boolean doTypes = false;
  95 //      static final boolean doNameFacts = false;
  96 //
  97 //      //taxa
  98 //      static final boolean doTaxa = false;
  99 //      static final boolean doRelTaxa = false;
 100 //      static final boolean doFacts = false;
 101 //      static final boolean doOccurences = false;
 102 //      static final boolean doCommonNames = false;
 103
 104
 105         public void invoke(String[] args){
 106                 System.out.println("Start import from BerlinModel("+ berlinModelSource.getDatabase() + ") ...");
 107                 logger.debug("Start");
 108                 //make BerlinModel Source
 109                 Source source = berlinModelSource;
 110                 ICdmDataSource destination = CdmDestinations.chooseDestination(args) != null ? CdmDestinations.chooseDestination(args) : cdmDestination;
 111
 112                 BerlinModelImportConfigurator bmImportConfigurator = BerlinModelImportConfigurator.NewInstance(source,  destination);
 113
 114                 bmImportConfigurator.setClassificationUuid(classificationUuid);
 115 //              bmImportConfigurator.setSourceSecId(sourceSecId);
 116                 bmImportConfigurator.setNomenclaturalCode(nomenclaturalCode);
 117
 118                 bmImportConfigurator.setDoAuthors(doAuthors);
 119                 bmImportConfigurator.setDoReferences(doReferences);
 120                 bmImportConfigurator.setDoTaxonNames(doTaxonNames);
 121                 bmImportConfigurator.setDoRelNames(doRelNames);
 122                 bmImportConfigurator.setDoNameStatus(doNameStatus);
 123                 bmImportConfigurator.setDoTypes(doTypes);
 124                 bmImportConfigurator.setDoNameFacts(doNameFacts);
 125
 126                 bmImportConfigurator.setDoTaxa(doTaxa);
 127                 bmImportConfigurator.setDoRelTaxa(doRelTaxa);
 128                 bmImportConfigurator.setDoFacts(doFacts);
 129                 bmImportConfigurator.setDoOccurrence(doOccurences);
 130                 bmImportConfigurator.setDoCommonNames(doCommonNames);
 131                 bmImportConfigurator.setSourceRefUuid(sourceRefUuid);
 132
 133                 bmImportConfigurator.setDbSchemaValidation(hbm2dll);
 134
 135                 bmImportConfigurator.setCheck(check);
 136
 137                 // invoke import
 138                 CdmDefaultImport<BerlinModelImportConfigurator> bmImport = new CdmDefaultImport<BerlinModelImportConfigurator>();
 139                 bmImport.invoke(bmImportConfigurator);
 140
 141                 if (doFacts && (bmImportConfigurator.getCheck().equals(CHECK.CHECK_AND_IMPORT)  || bmImportConfigurator.getCheck().equals(CHECK.IMPORT_WITHOUT_CHECK) )   ){
 142                         ICdmApplicationConfiguration app = bmImport.getCdmAppController();
 143
 144                         //make feature tree
 145                         FeatureTree tree = TreeCreator.flatTree(featureTreeUuid, bmImportConfigurator.getFeatureMap(), featureKeyList);
 146                         FeatureNode distributionNode = FeatureNode.NewInstance(Feature.DISTRIBUTION());
 147                         tree.getRoot().addChild(distributionNode, 0);
 148                         app.getFeatureTreeService().saveOrUpdate(tree);
 149                 }
 150
 151
 152                 System.out.println("End import from BerlinModel ("+ source.getDatabase() + ")...");
 153         }
 154
 155
 156         /**
 157          * @param args
 158          */
 159         public static void main(String[] args) {
 160                 MTMooseActivator activator = new MTMooseActivator();
 161                 activator.invoke(args);
 162         }
 163
 164 }