cdm-eflora/src/main/java/eu/etaxonomy/cdm/app/eflora/FloraMalesianaActivator.java

   1 /**
   2 * Copyright (C) 2007 EDIT
   3 * European Distributed Institute of Taxonomy
   4 * http://www.e-taxonomy.eu
   5 *
   6 * The contents of this file are subject to the Mozilla Public License Version 1.1
   7 * See LICENSE.TXT at the top of this package for the full license terms.
   8 */
   9 package eu.etaxonomy.cdm.app.eflora;
  10
  11 import java.util.HashSet;
  12 import java.util.List;
  13 import java.util.Set;
  14 import java.util.UUID;
  15
  16 import org.apache.logging.log4j.LogManager;
  17 import org.apache.logging.log4j.Logger;
  18 import org.springframework.transaction.TransactionStatus;
  19
  20 import eu.etaxonomy.cdm.api.service.ITermService;
  21 import eu.etaxonomy.cdm.common.URI;
  22 import eu.etaxonomy.cdm.database.DbSchemaValidation;
  23 import eu.etaxonomy.cdm.database.ICdmDataSource;
  24 import eu.etaxonomy.cdm.io.common.CdmDefaultImport;
  25 import eu.etaxonomy.cdm.io.common.IImportConfigurator.CHECK;
  26 import eu.etaxonomy.cdm.io.common.events.IIoObserver;
  27 import eu.etaxonomy.cdm.io.common.events.LoggingIoObserver;
  28 import eu.etaxonomy.cdm.io.common.mapping.IInputTransformer;
  29 import eu.etaxonomy.cdm.io.common.mapping.UndefinedTransformerMethodException;
  30 import eu.etaxonomy.cdm.io.eflora.floraMalesiana.FloraMalesianaTransformer;
  31 import eu.etaxonomy.cdm.io.markup.MarkupImportConfigurator;
  32 import eu.etaxonomy.cdm.model.description.Feature;
  33 import eu.etaxonomy.cdm.model.description.PolytomousKey;
  34 import eu.etaxonomy.cdm.model.reference.Reference;
  35 import eu.etaxonomy.cdm.model.reference.ReferenceFactory;
  36 import eu.etaxonomy.cdm.model.term.TermNode;
  37 import eu.etaxonomy.cdm.model.term.TermTree;
  38
  39 /**
  40  * @author a.mueller
  41  * @since 20.06.2008
  42  */
  43 public class FloraMalesianaActivator extends EfloraActivatorBase {
  44
  45     private static Logger logger = LogManager.getLogger();
  46
  47         //database validation status (create, update, validate ...)
  48         static DbSchemaValidation hbm2dll = DbSchemaValidation.CREATE;
  49
  50 //      static final ICdmDataSource cdmDestination = CdmDestinations.cdm_flora_malesiana_preview();
  51 //      static final ICdmDataSource cdmDestination = CdmDestinations.cdm_flora_malesiana_production();
  52         static final ICdmDataSource cdmDestination = CdmDestinations.localH2();
  53 //      static final ICdmDataSource cdmDestination = CdmDestinations.cdm_test_local_mysql();
  54 //      static final ICdmDataSource cdmDestination = CdmDestinations.cdm_test_local_mysql_test();
  55
  56         private final boolean includeBase = false;
  57
  58         //5880 / 121834
  59         //2 footnote issues
  60         //habitat: 6 syso, + ???
  61         private final boolean includeVol04 = includeBase;
  62         //6258  / 110625
  63         //11 sysos, + ??
  64         private final boolean includeVol05 = includeBase;
  65         //8097   / 177845
  66         //2 sysos (<sub>
  67         //102 keys
  68     private final boolean includeVol06 = includeBase;
  69
  70         //2283 /49700
  71         //no syso, 120 lifecycle, few of them references! and figureRef?
  72         private final boolean includeVol07_1 = includeBase;
  73         //1640
  74         //keys: 1 nothofagus; 4 quercus
  75 //12 syso, no uncovered, >>100 lifecycle, >10 references, figureRefs?
  76     private final boolean includeVol07_2 = includeBase;
  77     //4225
  78  //430 syso (10 subheadings),no uncovered, 43 figureRef, references and lifecycle
  79     private final boolean includeVol07_3_09_1 = includeBase;
  80     //561   /   12440
  81     //no syso, 14 lifecycle, 1 reference
  82     private final boolean includeVol07_4 = includeBase;
  83
  84     //223   /   5986
  85     //no syso, 5 lifecycle
  86     private final boolean includeVol08_1 = includeBase;
  87     //2830   /   53189
  88     //keys: 23 S. Moore -> Symplocos Moore (handle manually before import)
  89  //4syso, <= uncovered, <150 lifecycle, figureRef and references
  90     private final boolean includeVol08_2 = includeBase;
  91     //2912    /   54235
  92     //no syso
  93         private final boolean includeVol08_3 = includeBase;
  94         //4641    /   94566
  95  //184 syso!! (30 subheadings), <=3 uncovered, <50 lifecycle and figureRef
  96         private final boolean includeVol09 = includeBase;
  97         //845   / 19098
  98         //no syso, <= 5 uncovered, <=50 lifecycle
  99         private final boolean includeVol10_1 = includeBase;
 100         //1211  / 32334
 101 //6 syso, <=3 uncovered, <50 lifecycle
 102     private final boolean includeVol10_2 = includeBase;
 103     //1993   /  49034
 104 //2 syso habitats, 2 fast, many lifcycle
 105         private final boolean includeVol10_3 = includeBase;
 106         //533    /   13553
 107         //no syso, 1 uncovered, 1 figureRef, 10 lifecycle
 108         private final boolean includeVol10_4 = includeBase;
 109         //1529     /  36379
 110         //keys: 1 manually (a sect. botrycephalae)
 111         //no syso, <= 10 uncovered, < 100 lifecycle
 112         private final boolean includeVol11_1 = includeBase;
 113         //1271   /  24775
 114         //keys: 2 cultivar groups (a cultivar group aggregatum; b cultivar group common onion)
 115         //no syso, 1 uncovered, 1 lifecycle, 2 references
 116         private final boolean includeVol11_2 = includeBase;
 117         //4582    /  52747
 118         //1 empty "[]"
 119         //no syso habitat, <10 uncovered, > 100 lifecycles
 120         private final boolean includeVol11_3 = includeBase;
 121         //6135   /   116737
 122         //keys: 10 apostrophs
 123         //habitat: no syso, 200 - 400 uncovered, different types
 124         private final boolean includeVol12 = includeBase;
 125         //2865    /   43764
 126         //keys: 1 manual (Loranthaceae)
 127         //no syso, 1 uncovered habitat
 128         private final boolean includeVol13 = includeBase;
 129         //4843   /   55501
 130         //no syso habitat, 100-150 uncovered, most of them flowering and fruiting lifecycle
 131         private final boolean includeVol14 = includeBase;
 132         //1775   /   16415
 133         //no syso, 5 uncovered, 2 of them epiphytic
 134         private final boolean includeVol15 = includeBase;
 135         //1471   /   22049
 136         //no syso, <= 60 uncovered, very different types
 137         private final boolean includeVol16 = includeBase;
 138
 139         //4113    /   116956
 140         //no syso, medium # uncovered habitat (some or)
 141         private final boolean includeVol17 = includeBase;
 142         //6422    /   71151
 143         //no syso habitat, <20 uncovered
 144         private final boolean includeVol18 = includeBase;
 145         //2612    /   27663
 146     //no syso habitat, <= 50 uncovered, mostly untagged lifecycle, some errors
 147     private final boolean includeVol19 = includeBase;
 148     //563    /    5866
 149     //no syso, < 20 uncovered, mostly untagged lifecycle
 150         private final boolean includeVol20 = includeBase;
 151         //1735     /   19469
 152         //no syso, no covered, medium # lifecycle and very few references
 153         private final boolean includeVol21 = ! includeBase;
 154
 155 //Ser II
 156         //5798  / 123.627
 157         //2 manually, 9 non standard(?), 2 hybrids(?)
 158         //no syso habitat, only figureRef and references as habitat issues
 159     private final boolean includeVol2_1 = includeBase;
 160     //1054   / 25100
 161     //2 hybrid formulas
 162     //no syso, no habitat issue
 163     private final boolean includeVol2_2 = includeBase;
 164     //2382  / 52100
 165     //no syso, 10-15 uncovered, 2 unexpected attributes: extra
 166         private final boolean includeVol2_3 = includeBase;
 167         //1045  / 12240
 168         //no syso, 1 <br>
 169         private final boolean includeVol2_4 = includeBase;
 170
 171
 172         static final URI fmSource04 = EfloraSources.fm_04();
 173         static final URI fmSource05 = EfloraSources.fm_05();
 174         static final URI fmSource06 = EfloraSources.fm_06();
 175     static final URI fmSource07_1 = EfloraSources.fm_07_1();
 176     static final URI fmSource07_2 = EfloraSources.fm_07_2();
 177     static final URI fmSource07_3_09_1 = EfloraSources.fm_07_3_09_1();
 178     static final URI fmSource07_4 = EfloraSources.fm_07_4();
 179
 180     static final URI fmSource08_1 = EfloraSources.fm_08_1();
 181     static final URI fmSource08_2 = EfloraSources.fm_08_2();
 182     static final URI fmSource08_3 = EfloraSources.fm_08_3();
 183
 184     static final URI fmSource09 = EfloraSources.fm_09();
 185
 186     static final URI fmSource10_1 = EfloraSources.fm_10_1();
 187     static final URI fmSource10_2 = EfloraSources.fm_10_2();
 188     static final URI fmSource10_3 = EfloraSources.fm_10_3();
 189     static final URI fmSource10_4 = EfloraSources.fm_10_4();
 190
 191
 192     static final URI fmSource11_1 = EfloraSources.fm_11_1();
 193     static final URI fmSource11_2 = EfloraSources.fm_11_2();
 194     static final URI fmSource11_3 = EfloraSources.fm_11_3();
 195     static final URI fmSource12_1 = EfloraSources.fm_12();
 196     static final URI fmSource13 = EfloraSources.fm_13();
 197     static final URI fmSource14 = EfloraSources.fm_14();
 198     static final URI fmSource15 = EfloraSources.fm_15();
 199     static final URI fmSource16 = EfloraSources.fm_16();
 200     static final URI fmSource17 = EfloraSources.fm_17();
 201     static final URI fmSource17_1 = EfloraSources.fm_17_1();
 202     static final URI fmSource17_2 = EfloraSources.fm_17_2();
 203     static final URI fmSource18 = EfloraSources.fm_18();
 204     static final URI fmSource19 = EfloraSources.fm_19();
 205     static final URI fmSource20 = EfloraSources.fm_20();
 206     static final URI fmSource21 = EfloraSources.fm_21();
 207
 208     static final URI fmSource_Ser2_01 = EfloraSources.fm_ser2_1();
 209     static final URI fmSource_Ser2_02 = EfloraSources.fm_ser2_2();
 210     static final URI fmSource_Ser2_03 = EfloraSources.fm_ser2_3();
 211     static final URI fmSource_Ser2_04 = EfloraSources.fm_ser2_4();
 212
 213         private final boolean h2ForCheck = true;
 214
 215         static final boolean reuseState = true;  //when running multiple imports
 216
 217         //feature tree uuid
 218         public static final UUID featureTreeUuid = UUID.fromString("168df0c6-6429-484c-b26f-ded1f7e44bd9");
 219         private static final String featureTreeTitle = "Flora Malesiana Presentation Feature Tree";
 220
 221         //classification
 222         static final UUID classificationUuid = UUID.fromString("ca4e4bcb-a1d1-4124-a358-a3d3c41dd450");
 223         static final String classificationTitle = "Flora Malesiana";
 224
 225         //check - import
 226         static CHECK check = CHECK.IMPORT_WITHOUT_CHECK;
 227
 228         static boolean doPrintKeys = false;
 229
 230         //taxa
 231         static final boolean doTaxa = true;
 232
 233
 234         private final boolean replaceStandardKeyTitles = false;
 235
 236         private final IIoObserver observer = new LoggingIoObserver();
 237         private final Set<IIoObserver> observerList = new HashSet<IIoObserver>();
 238
 239
 240         private void doImport(ICdmDataSource cdmDestination){
 241                 observerList.add(observer);
 242                 if (h2ForCheck && cdmDestination.getDatabaseType().equals(CdmDestinations.localH2().getDatabaseType())){
 243                         check = CHECK.CHECK_ONLY;
 244                 }
 245
 246                 //make Source
 247 //              URI source = fmSource13_small;
 248                 URI source = null;
 249
 250                 MarkupImportConfigurator markupConfig= MarkupImportConfigurator.NewInstance(source, cdmDestination);
 251                 markupConfig.setClassificationUuid(classificationUuid);
 252                 markupConfig.setClassificationName(classificationTitle);
 253                 markupConfig.setDoTaxa(doTaxa);
 254                 markupConfig.setCheck(check);
 255                 markupConfig.setDoPrintKeys(doPrintKeys);
 256                 markupConfig.setDbSchemaValidation(hbm2dll);
 257                 markupConfig.setObservers(observerList);
 258                 markupConfig.setReplaceStandardKeyTitles(replaceStandardKeyTitles);
 259                 markupConfig.setReuseExistingState(reuseState);
 260
 261                 markupConfig.setSourceReference(getSourceReference("Flora Malesiana - Vol. 13"));
 262
 263                 CdmDefaultImport<MarkupImportConfigurator> myImport = new CdmDefaultImport<MarkupImportConfigurator>();
 264
 265         //Vol04
 266         doSource(includeVol04, fmSource04, "Flora Malesiana - vol. 4", markupConfig, myImport);
 267         //Vol05
 268         doSource(includeVol05, fmSource05, "Flora Malesiana - vol. 5", markupConfig, myImport);
 269         //Vol06
 270         doSource(includeVol06, fmSource06, "Flora Malesiana - vol. 6", markupConfig, myImport);
 271         //Vol07_1
 272         doSource(includeVol07_1, fmSource07_1, "Flora Malesiana - vol. 7, pt.1", markupConfig, myImport);
 273         //Vol07_2
 274         doSource(includeVol07_2, fmSource07_2, "Flora Malesiana - vol. 7, pt.2", markupConfig, myImport);
 275         //Vol07_3
 276         doSource(includeVol07_3_09_1, fmSource07_3_09_1, "Flora Malesiana - vol. 7, pt.3 and vol. 9 pt.1", markupConfig, myImport);
 277         //Vol07_4
 278         doSource(includeVol07_4, fmSource07_4, "Flora Malesiana - vol. 7, pt.4", markupConfig, myImport);
 279
 280                 //Vol08_1
 281                 doSource(includeVol08_1, fmSource08_1, "Flora Malesiana - vol. 8, pt.1", markupConfig, myImport);
 282
 283                 //Vol08_2
 284                 doSource(includeVol08_2, fmSource08_2, "Flora Malesiana - vol. 8, pt.2", markupConfig, myImport);
 285
 286                 //Vol08_3
 287                 doSource(includeVol08_3, fmSource08_3, "Flora Malesiana - vol. 8, pt.3", markupConfig, myImport);
 288
 289                 //Vol09
 290         doSource(includeVol09, fmSource09, "Flora Malesiana - vol. 9", markupConfig, myImport);
 291
 292                 //Vol10_1
 293                 doSource(includeVol10_1, fmSource10_1, "Flora Malesiana - vol. 10, pt.1", markupConfig, myImport);
 294
 295                 //Vol10_2
 296                 doSource(includeVol10_2, fmSource10_2, "Flora Malesiana - vol. 10, pt.2", markupConfig, myImport);
 297
 298                 //Vol10_3
 299                 doSource(includeVol10_3, fmSource10_3, "Flora Malesiana - vol. 10, pt.3", markupConfig, myImport);
 300
 301                 //Vol10_4
 302                 doSource(includeVol10_4, fmSource10_4, "Flora Malesiana - vol. 10, pt.4", markupConfig, myImport);
 303
 304                 //Vol11_1
 305                 doSource(includeVol11_1, fmSource11_1, "Flora Malesiana - vol. 11, pt.1", markupConfig, myImport);
 306
 307                 //Vol11_2
 308                 doSource(includeVol11_2, fmSource11_2, "Flora Malesiana - vol. 11, pt.2", markupConfig, myImport);
 309
 310                 //Vol11_3
 311                 doSource(includeVol11_3, fmSource11_3, "Flora Malesiana - vol. 11, pt.3", markupConfig, myImport);
 312
 313                 //Vol12_1
 314                 doSource(includeVol12, fmSource12_1, "Flora Malesiana - vol. 12", markupConfig, myImport);
 315
 316                 //Vol13_large
 317                 doSource(includeVol13, fmSource13, "Flora Malesiana - vol. 13", markupConfig, myImport);
 318
 319                 //Vol14
 320                 doSource(includeVol14, fmSource14, "Flora Malesiana - vol. 14", markupConfig, myImport);
 321
 322                 //Vol15
 323                 doSource(includeVol15, fmSource15, "Flora Malesiana - vol. 15", markupConfig, myImport);
 324
 325                 //Vol16
 326                 doSource(includeVol16, fmSource16, "Flora Malesiana - vol. 16", markupConfig, myImport);
 327
 328                 //Vol17, part1+2
 329         doSource(includeVol17, fmSource17, "Flora Malesiana - vol. 17, part I and II", markupConfig, myImport);
 330
 331 //              //Vol17, part1
 332 //              doSource(includeVol17_1, fmSource17_1, "Flora Malesiana - vol. 17, part I", markupConfig, myImport);
 333 //
 334 //              //Vol17, part2
 335 //              doSource(includeVol17_2, fmSource17_2, "Flora Malesiana - vol. 17, part II", markupConfig, myImport);
 336
 337                 //Vol18
 338                 doSource(includeVol18, fmSource18, "Flora Malesiana - vol. 18", markupConfig, myImport);
 339
 340                 //Vol19
 341                 doSource(includeVol19, fmSource19, "Flora Malesiana - vol. 19", markupConfig, myImport);
 342
 343                 //Vol20
 344                 doSource(includeVol20, fmSource20, "Flora Malesiana - vol. 20", markupConfig, myImport);
 345
 346                 //Vol21
 347                 doSource(includeVol21, fmSource21, "Flora Malesiana - vol. 21", markupConfig, myImport);
 348
 349         //Vol_2_1
 350         doSource(includeVol2_1, fmSource_Ser2_01, "Flora Malesiana - Ser.2, vol. 1", markupConfig, myImport);
 351
 352                 //Vol_2_2
 353                 doSource(includeVol2_2, fmSource_Ser2_02, "Flora Malesiana - Ser.2, vol. 2", markupConfig, myImport);
 354
 355                 //Vol_2_3
 356                 doSource(includeVol2_3, fmSource_Ser2_03, "Flora Malesiana - Ser.2, vol. 3", markupConfig, myImport);
 357
 358                 //Vol_2_3
 359                 doSource(includeVol2_4, fmSource_Ser2_04, "Flora Malesiana - Ser.2, vol. 4", markupConfig, myImport);
 360
 361
 362                 makeAutomatedFeatureTree(myImport.getCdmAppController(), markupConfig.getState(),
 363                                 featureTreeUuid, featureTreeTitle);
 364
 365 //              makeGeoService();
 366
 367                 TermTree<Feature> tree = makeFeatureNode(myImport.getCdmAppController().getTermService());
 368                 myImport.getCdmAppController().getTermTreeService().saveOrUpdate(tree);
 369
 370                 //check keys
 371                 if (doPrintKeys){
 372                         TransactionStatus tx = myImport.getCdmAppController().startTransaction();
 373                         List<PolytomousKey> keys = myImport.getCdmAppController().getPolytomousKeyService().list(PolytomousKey.class, null, null, null, null);
 374                         for(PolytomousKey key : keys){
 375                                 key.print(System.out);
 376                                 System.out.println();
 377                         }
 378                         myImport.getCdmAppController().commitTransaction(tx);
 379                 }
 380
 381         }
 382
 383         private void doSource(boolean doInclude, URI source, String sourceTitle, MarkupImportConfigurator markupConfig,
 384                         CdmDefaultImport<MarkupImportConfigurator> myImport) {
 385                 if (doInclude){
 386                         System.out.println("\nStart import from ("+ source.toString() + ") ...");
 387                         markupConfig.setSource(source);
 388                         markupConfig.setSourceReference(getSourceReference(sourceTitle));
 389                         myImport.invoke(markupConfig);
 390                         System.out.println("End import from ("+ source.toString() + ")...");
 391                 }
 392         }
 393
 394         private Reference getSourceReference(String string) {
 395                 Reference result = ReferenceFactory.newGeneric();
 396                 result.setTitleCache(string, true);
 397                 return result;
 398         }
 399
 400         private TermTree<Feature> makeFeatureNode(ITermService service){
 401                 FloraMalesianaTransformer transformer = new FloraMalesianaTransformer();
 402
 403                 TermTree<Feature> result = TermTree.NewFeatureInstance(UUID.randomUUID());
 404                 result.setTitleCache("Flora Malesiana Presentation Feature Tree - Old", true);
 405                 TermNode<Feature> root = result.getRoot();
 406
 407                 TermNode<Feature> newNode = root.addChild(Feature.DESCRIPTION());
 408
 409                 addFeatureNodesByStringList(descriptionFeatureList, newNode, transformer, service);
 410
 411                 addFeatureNodesByStringList(generellDescriptionsUpToAnatomyList, root, transformer, service);
 412                 newNode = root.addChild(Feature.ANATOMY());  //not sure if this is correct, but it looked like the node was orphaned before
 413                 addFeatureNodesByStringList(anatomySubfeatureList, newNode, transformer, service);
 414
 415                 newNode = addFeatureNodesByStringList(generellDescriptionsFromAnatomyToPhytoChemoList, root, transformer, service);
 416                 addFeatureNodesByStringList(phytoChemoSubFeaturesList, newNode, transformer, service);
 417
 418                 newNode = addFeatureNodesByStringList(generellDescriptionsFromPhytoChemoList, root, transformer, service);
 419
 420
 421                 newNode = root.addChild(Feature.DISTRIBUTION());
 422
 423                 newNode = root.addChild(Feature.ECOLOGY());
 424                 addFeatureNodesByStringList(habitatEcologyList, root, transformer, service);
 425
 426                 newNode = root.addChild(Feature.USES());
 427
 428                 addFeatureNodesByStringList(chomosomesList, root, transformer, service);
 429
 430                 newNode = root.addChild(Feature.CITATION());
 431
 432                 return result;
 433         }
 434
 435         private static String [] chomosomesList = new String[]{
 436                 "Chromosomes",
 437         };
 438
 439         private static String [] habitatEcologyList = new String[]{
 440                 "Habitat",
 441                 "Habitat & Ecology"
 442         };
 443
 444         private static String [] generellDescriptionsUpToAnatomyList = new String[]{
 445                 "Fossils",
 446                 "Morphology and anatomy",
 447                 "Morphology",
 448                 "Vegetative morphology and anatomy",
 449         };
 450
 451         private static String [] anatomySubfeatureList = new String[]{
 452                 "Leaf anatomy",
 453                 "Wood anatomy"
 454         };
 455
 456         private static String [] generellDescriptionsFromAnatomyToPhytoChemoList = new String[]{
 457                 "Flower morphology",
 458                 "Palynology",
 459                 "Pollination",
 460                 "Pollen morphology",
 461                 "embryology",
 462                 "cytology",
 463                 "Life cycle",
 464                 "Fruits and embryology",
 465                 "Dispersal",
 466                 "Chromosome numbers",
 467                 "Phytochemistry and Chemotaxonomy",
 468         };
 469
 470         private static String [] phytoChemoSubFeaturesList = new String[]{
 471                 "Alkaloids",
 472                 "Iridoid glucosides",
 473                 "Leaf phenolics",
 474                 "Storage products of seeds",
 475                 "Aluminium",
 476                 "Chemotaxonomy",
 477         };
 478
 479         private static String [] generellDescriptionsFromPhytoChemoList = new String[]{
 480                 "Phytochemistry",
 481                 "Taxonomy",
 482                 "history",
 483                 "cultivation",
 484                 "Notes"
 485         };
 486
 487         private static String [] descriptionFeatureList = new String[]{
 488                 "lifeform",
 489                 "Bark",
 490                 //new
 491                 "wood",
 492                 "Indumentum",
 493                 "endophytic body",
 494                 "flowering buds",
 495                 "Branchlets",
 496                 "Branches",
 497                 "Branch",
 498                 "Flowering branchlets",
 499                 "Trees",
 500                 "Twigs",
 501                 "stem",
 502                 "Stems",
 503                 "stem leaves",
 504                 "Leaves",
 505                 "flower-bearing stems",
 506                 "Petiole",
 507                 "Petiolules",
 508                 "Leaflets",
 509                 "Thyrsus",
 510                 "Thyrses",
 511                 "Inflorescences",
 512                 "Inflorescence",
 513                 "Young inflorescences",
 514                 "Male inflorescences",
 515                 "Female inflorescences",
 516                 "Bracts",
 517                 "Pedicels",
 518                 "flowering buds",
 519                 "scales",
 520                 "Buds",
 521                 "Flowers",
 522                 "Flower",
 523                 "Flowering",
 524                 "Stigma",
 525                 "perianth",
 526                 "Sepals",
 527                 "Sepal",
 528                 "Outer Sepals",
 529                 "Axillary",
 530                 "cymes",
 531                 "Calyx",
 532                 "Petal",
 533                 "Petals",
 534                 "perigone",
 535                 "perigone lobes",
 536                 "perigone tube",
 537                 "Disc",
 538                 "corolla",
 539                 "Stamens",
 540                 "Staminodes",
 541                 "Ovary",
 542                 "Anthers",
 543                 "anther",
 544                 "Pistil",
 545                 "Pistillode",
 546                 "Ovules",
 547                 "androecium",
 548                 "gynoecium",
 549                 "Filaments",
 550                 "Style",
 551                 "annulus",
 552                 "female flowers",
 553                 "Male flowers",
 554                 "Female",
 555                 "Infructescences",    //order not consistent (sometimes before "Flowers")
 556                 "Fruit",
 557                 "Fruits",
 558                 "fruiting axes",
 559                 "drupes",
 560                 "Arillode",
 561                 "seed",
 562                 "Seeds",
 563                 "Seedling",
 564                 "flower tube",
 565                 "nutlets",
 566                 "pollen",
 567                 "secondary xylem",
 568                 "chromosome number",
 569
 570                 "figure",
 571                 "fig",
 572                 "figs",
 573         };
 574
 575         public TermNode<Feature> addFeatureNodesByStringList(String[] featureStringList,
 576                 TermNode<Feature> root, IInputTransformer transformer, ITermService termService){
 577             TermNode<Feature> lastChild = null;
 578                 try {
 579                         for (String featureString : featureStringList){
 580                                 UUID featureUuid;
 581                                 featureUuid = transformer.getFeatureUuid(featureString);
 582                                 Feature feature = (Feature)termService.find(featureUuid);
 583                                 if (feature != null){
 584                                         root.addChild(feature);
 585                                 }
 586                         }
 587
 588                 } catch (UndefinedTransformerMethodException e) {
 589                         logger.error("getFeatureUuid is not implemented in transformer. Features could not be added");
 590                 }
 591                 return lastChild;
 592         }
 593
 594         public static void main(String[] args) {
 595                 FloraMalesianaActivator me = new FloraMalesianaActivator();
 596                 me.doImport(cdmDestination);
 597                 System.exit(0);
 598         }
 599 }