app-import/src/main/java/eu/etaxonomy/cdm/io/plantglossary/PlantGlossaryCsvImportState.java

   1 /**
   2 * Copyright (C) 2017 EDIT
   3 * European Distributed Institute of Taxonomy
   4 * http://www.e-taxonomy.eu
   5 *
   6 * The contents of this file are subject to the Mozilla Public License Version 1.1
   7 * See LICENSE.TXT at the top of this package for the full license terms.
   8 */
   9 package eu.etaxonomy.cdm.io.plantglossary;
  10
  11 import java.net.URI;
  12 import java.net.URISyntaxException;
  13 import java.util.ArrayList;
  14 import java.util.HashSet;
  15 import java.util.List;
  16 import java.util.Set;
  17
  18 import eu.etaxonomy.cdm.api.service.ITermService;
  19 import eu.etaxonomy.cdm.api.service.IVocabularyService;
  20 import eu.etaxonomy.cdm.io.csv.in.CsvImportState;
  21 import eu.etaxonomy.cdm.model.agent.Institution;
  22 import eu.etaxonomy.cdm.model.agent.Person;
  23 import eu.etaxonomy.cdm.model.agent.Team;
  24 import eu.etaxonomy.cdm.model.common.TermVocabulary;
  25 import eu.etaxonomy.cdm.model.common.VerbatimTimePeriod;
  26 import eu.etaxonomy.cdm.model.description.State;
  27 import eu.etaxonomy.cdm.model.reference.Reference;
  28 import eu.etaxonomy.cdm.model.reference.ReferenceFactory;
  29
  30 /**
  31  *
  32  * @author pplitzner
  33  * @since Dec 7, 2018
  34  *
  35  */
  36 public class PlantGlossaryCsvImportState extends CsvImportState<PlantGlossaryCsvImportConfigurator> {
  37
  38     private List<TermVocabulary> existingVocabularies = new ArrayList<>();
  39     private List<State> existingTerms = new ArrayList<>();
  40     private Set<TermVocabulary> vocabularies = new HashSet<>();
  41     private final Reference citation;
  42
  43
  44     protected PlantGlossaryCsvImportState(PlantGlossaryCsvImportConfigurator config) {
  45         super(config);
  46         citation = ReferenceFactory.newGeneric();
  47         citation.setTitle("FloraTerms");
  48         Team team = Team.NewInstance();
  49         team.addTeamMember(Person.NewInstance(null, "Cui", null, "Hong"));
  50         team.addTeamMember(Person.NewInstance(null, "Cole", null, "Heather"));
  51         team.addTeamMember(Person.NewInstance(null, "Endara", null, "Lorena"));
  52         team.addTeamMember(Person.NewInstance(null, "Macklin", null, "James"));
  53         team.addTeamMember(Person.NewInstance(null, "Sachs", null, "Joel"));
  54         citation.setAuthorship(team);
  55         VerbatimTimePeriod datePublished = VerbatimTimePeriod.NewVerbatimInstance();
  56         datePublished.setStartYear(2014);
  57         datePublished.setStartMonth(6);
  58         datePublished.setStartDay(13);
  59         citation.setDatePublished(datePublished);
  60         Institution institution = Institution.NewNamedInstance("OTO System");
  61         institution.addUrl(URI.create("http://biosemantics.arizona.edu/OTO/"));
  62         citation.setInstitution(institution);
  63         URI uri;
  64         try {
  65             uri = new URI("https://terms.tdwg.org/wiki/FloraTerms");
  66             citation.setUri(uri);
  67         } catch (URISyntaxException e) {
  68         }
  69     }
  70
  71     @Override
  72     public void resetSession(){
  73         super.resetSession();
  74     }
  75
  76     void addVocabulary(TermVocabulary vocabulary) {
  77         vocabularies.add(vocabulary);
  78     }
  79
  80     TermVocabulary checkVocabularies(String vocName, IVocabularyService vocabularyService){
  81         if(existingVocabularies.isEmpty()){
  82             existingVocabularies = vocabularyService.list(TermVocabulary.class, null, null, null, null);
  83         }
  84         for (TermVocabulary termVocabulary : vocabularies) {
  85             if(termVocabulary.getLabel().equals(vocName)){
  86                 return termVocabulary;
  87             }
  88         }
  89         return null;
  90     }
  91
  92     public boolean isTermPresent(String termName, ITermService termService) {
  93         if(existingTerms.isEmpty()){
  94             existingTerms = termService.list(State.class, null, null, null, null);
  95         }
  96         return existingTerms.stream().map(term->term.getLabel()).anyMatch(label->label.equals(termName));
  97     }
  98
  99     Reference getCitation() {
 100         return citation;
 101     }
 102
 103 }