app-import/src/main/java/eu/etaxonomy/cdm/app/caryophyllales/CaryoActivator.java

   1 /**
   2 * Copyright (C) 2007 EDIT
   3 * European Distributed Institute of Taxonomy
   4 * http://www.e-taxonomy.eu
   5 *
   6 * The contents of this file are subject to the Mozilla Public License Version 1.1
   7 * See LICENSE.TXT at the top of this package for the full license terms.
   8 */
   9
  10 package eu.etaxonomy.cdm.app.caryophyllales;
  11
  12 import java.util.UUID;
  13
  14 import org.apache.log4j.Logger;
  15
  16 import eu.etaxonomy.cdm.api.application.ICdmApplicationConfiguration;
  17 import eu.etaxonomy.cdm.app.berlinModelImport.SourceBase;
  18 import eu.etaxonomy.cdm.app.common.CdmDestinations;
  19 import eu.etaxonomy.cdm.database.DbSchemaValidation;
  20 import eu.etaxonomy.cdm.database.ICdmDataSource;
  21 import eu.etaxonomy.cdm.io.caryo.CaryoImportConfigurator;
  22 import eu.etaxonomy.cdm.io.common.CdmDefaultImport;
  23 import eu.etaxonomy.cdm.io.common.IImportConfigurator.CHECK;
  24 import eu.etaxonomy.cdm.io.common.Source;
  25 import eu.etaxonomy.cdm.model.agent.Person;
  26 import eu.etaxonomy.cdm.model.reference.Reference;
  27 import eu.etaxonomy.cdm.model.reference.ReferenceFactory;
  28
  29 /**
  30  * @author a.mueller
  31  * @created 16.10.2012
  32  * @version 1.0
  33  */
  34 public class CaryoActivator extends SourceBase{
  35         private static final Logger logger = Logger.getLogger(CaryoActivator.class);
  36
  37         //database validation status (create, update, validate ...)
  38         static final DbSchemaValidation hbm2dll = DbSchemaValidation.CREATE;
  39         static final Source source = caryo_len61();
  40
  41
  42         static final ICdmDataSource cdmDestination = CdmDestinations.localH2();
  43 //      static final ICdmDataSource cdmDestination = CdmDestinations.cdm_test_local_mysql();
  44 //      static final ICdmDataSource cdmDestination = CdmDestinations.cdm_local_postgres_CdmTest();
  45
  46         static final String classificationName = "Caryophyllales";
  47
  48         //classification
  49         static final UUID classificationUuid = UUID.fromString("9edc58b5-de3b-43aa-9f31-1ede7c009c2b");
  50
  51         //check - import
  52         static final CHECK check = CHECK.IMPORT_WITHOUT_CHECK;
  53
  54         //taxa
  55         static final boolean doTaxa = true;
  56         static final boolean doDeduplicate = true;
  57
  58
  59         private void doImport(ICdmDataSource cdmDestination){
  60
  61                 //make Source
  62                 CaryoImportConfigurator config= CaryoImportConfigurator.NewInstance(source, cdmDestination);
  63                 config.setClassificationUuid(classificationUuid);
  64                 config.setCheck(check);
  65                 config.setDoTaxa(doTaxa);
  66                 config.setDbSchemaValidation(hbm2dll);
  67                 config.setSourceReferenceTitle("NCU - Caryophyllales, v0.4");
  68                 config.setClassificationName(classificationName);
  69
  70                 CdmDefaultImport<CaryoImportConfigurator> myImport = new CdmDefaultImport<CaryoImportConfigurator>();
  71
  72
  73                 //...
  74                 if (true){
  75                         System.out.println("Start import from ("+ source.toString() + ") ...");
  76                         config.setSourceReference(getSourceReference(config.getSourceReferenceTitle()));
  77                         myImport.invoke(config);
  78                         System.out.println("End import from ("+ source.toString() + ")...");
  79                 }
  80
  81
  82
  83                 //deduplicate
  84                 if (doDeduplicate){
  85                         ICdmApplicationConfiguration app = myImport.getCdmAppController();
  86                         int count = app.getAgentService().deduplicate(Person.class, null, null);
  87                         logger.warn("Deduplicated " + count + " persons.");
  88 //                      count = app.getAgentService().deduplicate(Team.class, null, null);
  89 //                      logger.warn("Deduplicated " + count + " teams.");
  90                         count = app.getReferenceService().deduplicate(Reference.class, null, null);
  91                         logger.warn("Deduplicated " + count + " references.");
  92                 }
  93
  94         }
  95
  96         private Reference<?> getSourceReference(String string) {
  97                 Reference<?> result = ReferenceFactory.newGeneric();
  98                 result.setTitleCache(string);
  99                 return result;
 100         }
 101
 102
 103         public static Source caryo_len61(){
 104                 //      Cyryophyllales source
 105                 String dbms = Source.SQL_SERVER_2008;
 106                 String strServer = "Lenovo-T61";
 107                 String strDB = "caryo";
 108                 int port = 1433;
 109                 String userName = "WebUser";
 110                 return  makeSource(dbms, strServer, strDB, port, userName, null);
 111         }
 112
 113
 114
 115         /**
 116          * @param args
 117          */
 118         public static void main(String[] args) {
 119                 CaryoActivator me = new CaryoActivator();
 120                 me.doImport(cdmDestination);
 121         }
 122
 123 }