app-import/src/main/java/eu/etaxonomy/cdm/app/iapt/IAPTActivator.java

   1 /**
   2 * Copyright (C) 2007 EDIT
   3 * European Distributed Institute of Taxonomy
   4 * http://www.e-taxonomy.eu
   5 *
   6 * The contents of this file are subject to the Mozilla Public License Version 1.1
   7 * See LICENSE.TXT at the top of this package for the full license terms.
   8 */
   9
  10 package eu.etaxonomy.cdm.app.iapt;
  11
  12 import java.io.File;
  13 import java.net.URI;
  14 import java.util.UUID;
  15
  16 import org.apache.log4j.Logger;
  17
  18 import eu.etaxonomy.cdm.app.common.CdmDestinations;
  19 import eu.etaxonomy.cdm.database.DbSchemaValidation;
  20 import eu.etaxonomy.cdm.database.ICdmDataSource;
  21 import eu.etaxonomy.cdm.io.common.CdmDefaultImport;
  22 import eu.etaxonomy.cdm.io.common.IImportConfigurator.CHECK;
  23 import eu.etaxonomy.cdm.io.iapt.IAPTImportConfigurator;
  24 import eu.etaxonomy.cdm.model.reference.Reference;
  25 import eu.etaxonomy.cdm.model.reference.ReferenceFactory;
  26
  27
  28 /**
  29  * @author a.kohlbecker
  30  * @date Jul 26, 2016
  31  *
  32  */
  33 public class IAPTActivator {
  34     private static final Logger logger = Logger.getLogger(IAPTActivator.class);
  35
  36     //database validation status (create, update, validate ...)
  37     static DbSchemaValidation hbm2dll = DbSchemaValidation.VALIDATE;
  38
  39     static final ICdmDataSource cdmDestination = CdmDestinations.localH2();
  40 //  static final ICdmDataSource cdmDestination = CdmDestinations.cdm_test_local_mysql_test();
  41 //    static final ICdmDataSource cdmDestination = CdmDestinations.cdm_cuba_production();
  42
  43     static boolean invers = true;
  44
  45     static boolean include = !invers;
  46
  47     //classification
  48     static final UUID classificationUuid = UUID.fromString("8c51efb4-3d67-4bea-8f87-4bc1cba1310d");
  49     private static final String classificationName = "IAPT";
  50     static final String sourceReferenceTitle = "IAPT Import";
  51
  52     //check - import
  53     static final CHECK check = CHECK.IMPORT_WITHOUT_CHECK;
  54
  55     static final boolean doTaxa = false;
  56
  57
  58     private void doImport(ICdmDataSource cdmDestination){
  59
  60         URI source = iapt();  //just any
  61
  62         Reference secRef = ReferenceFactory.newDatabase();
  63         secRef.setTitle("IAPT");
  64
  65         //make Source
  66         IAPTImportConfigurator config= IAPTImportConfigurator.NewInstance(source, cdmDestination);
  67         config.setClassificationUuid(classificationUuid);
  68         config.setClassificationName(classificationName);
  69         config.setCheck(check);
  70         config.setDbSchemaValidation(hbm2dll);
  71         config.setSourceReferenceTitle(sourceReferenceTitle);
  72         config.setSecReference(secRef);
  73
  74         CdmDefaultImport<IAPTImportConfigurator> myImport = new CdmDefaultImport<>();
  75
  76         doSingleSource(iapt(), config, myImport);
  77
  78         System.exit(0);
  79
  80     }
  81
  82     /**
  83      * @param source
  84      * @param config
  85      * @param myImport
  86      */
  87     private void doSingleSource(URI source, IAPTImportConfigurator config, CdmDefaultImport<IAPTImportConfigurator> myImport) {
  88         config.setSource(source);
  89         String fileName = source.toString();
  90         fileName = fileName.substring(fileName.lastIndexOf("/") + 1 );
  91
  92         String message = "Start import from ("+ fileName + ") ...";
  93         System.out.println(message);
  94         logger.warn(message);
  95         config.setSourceReference(getSourceReference(fileName));
  96         myImport.invoke(config);
  97
  98         System.out.println("End import from ("+ source.toString() + ")...");
  99     }
 100
 101     private final Reference inRef = ReferenceFactory.newGeneric();
 102     private Reference getSourceReference(String string) {
 103         Reference result = ReferenceFactory.newGeneric();
 104         result.setTitleCache(string, true);
 105         result.setInReference(inRef);
 106         inRef.setTitleCache(sourceReferenceTitle, true);
 107         return result;
 108     }
 109
 110
 111
 112     public static URI iapt() {
 113         File f = new File("~/data/Projekte/Algea Name Registry/registry/sources/IAPT/Registration_DB_from_BGBM17-cleaned.xls");
 114         return f.toURI();
 115     }
 116
 117     /**
 118      * @param args
 119      */
 120     public static void main(String[] args) {
 121         IAPTActivator me = new IAPTActivator();
 122         me.doImport(cdmDestination);
 123     }
 124
 125 }