app-import/src/main/java/eu/etaxonomy/cdm/app/berlinModelImport/MTStandardlisteActivator.java

   1 /**
   2         * Copyright (C) 2007 EDIT
   3         * European Distributed Institute of Taxonomy
   4         * http://www.e-taxonomy.eu
   5         *
   6         * The contents of this file are subject to the Mozilla Public License Version 1.1
   7         * See LICENSE.TXT at the top of this package for the full license terms.
   8         */
   9 package eu.etaxonomy.cdm.app.berlinModelImport;
  10
  11
  12 import java.util.UUID;
  13
  14 import org.apache.log4j.Logger;
  15
  16 import eu.etaxonomy.cdm.api.application.ICdmApplicationConfiguration;
  17 import eu.etaxonomy.cdm.app.common.CdmDestinations;
  18 import eu.etaxonomy.cdm.database.DbSchemaValidation;
  19 import eu.etaxonomy.cdm.database.ICdmDataSource;
  20 import eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelImportConfigurator;
  21 import eu.etaxonomy.cdm.io.common.CdmDefaultImport;
  22 import eu.etaxonomy.cdm.io.common.IImportConfigurator.CHECK;
  23 import eu.etaxonomy.cdm.io.common.IImportConfigurator.DO_REFERENCES;
  24 import eu.etaxonomy.cdm.io.common.Source;
  25 import eu.etaxonomy.cdm.model.description.Feature;
  26 import eu.etaxonomy.cdm.model.description.FeatureNode;
  27 import eu.etaxonomy.cdm.model.description.FeatureTree;
  28 import eu.etaxonomy.cdm.model.name.NomenclaturalCode;
  29
  30 public class MTStandardlisteActivator {
  31
  32
  33
  34         /**
  35          * TODO add the following to a wiki page:
  36          * HINT: If you are about to import into a mysql data base running under windows and if you wish to dump and restore the resulting data bas under another operation systen
  37          * you must set the mysql system variable lower_case_table_names = 0 in order to create data base with table compatible names.
  38          *
  39          *
  40          * @author a.mueller
  41          *
  42          */
  43
  44                 private static final Logger logger = Logger.getLogger(MTStandardlisteActivator.class);
  45
  46                 //database validation status (create, update, validate ...)
  47                 static DbSchemaValidation hbm2dll = DbSchemaValidation.CREATE;
  48                 static final Source berlinModelSource = BerlinModelSources.MT_Standardliste();
  49                 static final ICdmDataSource cdmDestination = CdmDestinations.cdm_test_local_mysql_standardliste2();
  50 //              static final ICdmDataSource cdmDestination = CdmDestinations.cdm_mt_standardliste();
  51
  52                 static final UUID treeUuid = UUID.fromString("70549f1a-3d30-42ae-8257-c8367e2703b0");
  53                 static final int sourceSecId = 7331;
  54                 static final UUID sourceRefUuid = UUID.fromString("33baaf62-f5c4-4260-aacb-090fe4d24206");
  55
  56                 static final UUID featureTreeUuid = UUID.fromString("2b592057-de3a-4782-a6f3-90a87e2a004d");
  57                 static final Object[] featureKeyList = new Integer[]{7,201,202,203,204,205,206,207};
  58
  59                 static final boolean includeFlatClassifications = true;
  60
  61
  62                 //check - import
  63                 static final CHECK check = CHECK.IMPORT_WITHOUT_CHECK;
  64
  65
  66
  67                 //NomeclaturalCode
  68                 static final NomenclaturalCode nomenclaturalCode = NomenclaturalCode.ICNAFP;
  69
  70         // ****************** ALL *****************************************
  71
  72                 //authors
  73                 static final boolean doAuthors = true;
  74                 //references
  75                 static final DO_REFERENCES doReferences =  DO_REFERENCES.ALL;
  76                 //names
  77                 static final boolean doTaxonNames = true;
  78                 static final boolean doRelNames = true;
  79                 static final boolean doNameStatus = false;
  80                 static final boolean doTypes = false;
  81                 static final boolean doNameFacts = false;
  82
  83                 //taxa
  84                 static final boolean doTaxa = true;
  85                 static final boolean doRelTaxa = true;
  86                 static final boolean doFacts = false;
  87                 static final boolean doOccurences = false;
  88                 static final boolean doCommonNames = false;
  89
  90                 private static final boolean includeAllNonMisappliedRelatedClassifications = true;
  91
  92
  93         // ************************ NONE **************************************** //
  94
  95 //              //authors
  96 //              static final boolean doAuthors = false;
  97 //              //references
  98 //              static final DO_REFERENCES doReferences =  DO_REFERENCES.NONE;
  99 //              //names
 100 //              static final boolean doTaxonNames = false;
 101 //              static final boolean doRelNames = false;
 102 //              static final boolean doNameStatus = false;
 103 //              static final boolean doTypes = false;
 104 //              static final boolean doNameFacts = false;
 105         //
 106 //              //taxa
 107 //              static final boolean doTaxa = false;
 108 //              static final boolean doRelTaxa = false;
 109 //              static final boolean doFacts = false;
 110 //              static final boolean doOccurences = false;
 111 //              static final boolean doCommonNames = false;
 112
 113
 114                 public void invoke(String[] args){
 115                         System.out.println("Start import from BerlinModel("+ berlinModelSource.getDatabase() + ") ...");
 116                         logger.debug("Start");
 117                         //make BerlinModel Source
 118                         Source source = berlinModelSource;
 119                         ICdmDataSource destination = CdmDestinations.chooseDestination(args) != null ? CdmDestinations.chooseDestination(args) : cdmDestination;
 120
 121                         BerlinModelImportConfigurator config = BerlinModelImportConfigurator.NewInstance(source,  destination);
 122
 123                         config.setClassificationUuid(treeUuid);
 124                         config.setSourceSecId(sourceSecId);
 125                         config.setNomenclaturalCode(nomenclaturalCode);
 126
 127                         config.setDoAuthors(doAuthors);
 128                         config.setDoReferences(doReferences);
 129                         config.setDoTaxonNames(doTaxonNames);
 130                         config.setDoRelNames(doRelNames);
 131                         config.setDoNameStatus(doNameStatus);
 132                         config.setDoTypes(doTypes);
 133                         config.setDoNameFacts(doNameFacts);
 134
 135                         config.setDoTaxa(doTaxa);
 136                         config.setDoRelTaxa(doRelTaxa);
 137                         config.setDoFacts(doFacts);
 138                         config.setDoOccurrence(doOccurences);
 139                         config.setDoCommonNames(doCommonNames);
 140                         config.setSourceRefUuid(sourceRefUuid);
 141
 142                         config.setDbSchemaValidation(hbm2dll);
 143                         config.setIncludeFlatClassifications(includeFlatClassifications);
 144                         config.setIncludeAllNonMisappliedRelatedClassifications(includeAllNonMisappliedRelatedClassifications);
 145
 146                         config.setCheck(check);
 147
 148                         // invoke import
 149                         CdmDefaultImport<BerlinModelImportConfigurator> bmImport = new CdmDefaultImport<BerlinModelImportConfigurator>();
 150                         bmImport.invoke(config);
 151
 152                         if (doFacts && (config.getCheck().equals(CHECK.CHECK_AND_IMPORT)  || config.getCheck().equals(CHECK.IMPORT_WITHOUT_CHECK) )   ){
 153                                 ICdmApplicationConfiguration app = bmImport.getCdmAppController();
 154
 155                                 //make feature tree
 156                                 FeatureTree tree = TreeCreator.flatTree(featureTreeUuid, config.getFeatureMap(), featureKeyList);
 157                                 FeatureNode imageNode = FeatureNode.NewInstance(Feature.IMAGE());
 158                                 tree.getRoot().addChild(imageNode);
 159                                 FeatureNode distributionNode = FeatureNode.NewInstance(Feature.DISTRIBUTION());
 160                                 tree.getRoot().addChild(distributionNode, 2);
 161                                 app.getFeatureTreeService().saveOrUpdate(tree);
 162                         }
 163
 164
 165                         System.out.println("End import from BerlinModel ("+ source.getDatabase() + ")...");
 166                 }
 167
 168
 169                 /**
 170                  * @param args
 171                  */
 172                 public static void main(String[] args) {
 173                         MTStandardlisteActivator activator = new MTStandardlisteActivator();
 174                         activator.invoke(args);
 175                 }
 176
 177         }
 178